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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066286 ID=TCONS_00066286|Name=TCONS_00066286|organism=Clytia hemisphaerica|type=transcript|length=1670bp
tgaagaagacatAAGGCCTGATGAAATGAGTTCATTTGTACCTTCTTCTT
TGAACACACAAAtgcataaaaacaaaatttctcattttatCAACAATATC
CCTGAACTGGATATTATTGGTATTGAACCAATCAATGAATTCAATACTCC
ATTTTTAGCTACTATGGCTTTTCCAACTCTATTTCCTGATGGCAAAGGTG
ATCCAACTAACCTTGCCTTGGAAAGAACTATAGCGTCTAATGAACTTGAA
AACTTTTCATTAAAGATTCGTCATTTACTCAAATTCTGTGATGTCAATGA
TGACAATTACTTCTATCGTTTTGCTGCACATCCTAGATTTGCCTACTGGG
CTTTCAACATATTGTATCGTAGAAGAATTTTGAGCAGGGGAAATTTGTAC
ATTAAAAGGAATCCAGGGGAAATGAATTTTACTTTGGATGAATTCAATGA
AATGTTAAACTCTAACTGTGCTAATGAATTGAtgaaaaaggtattttatt
aCACCAAAGATGTAAGTGGATCACGTTCTTTTTGGAACAAAGTACGAAAC
AATCTGACAGCAACAGTTAAACAAGTTGGggtatttacaatttttttcac
attttctaTGGCAGAGTTTCACTGGCCAGATCTTTTGAGTAAATTTAAAG
TAGATGTCAATGATGTGAATGGAATAAGAAAATTTATTACAGAGAATCCT
CATGTAGTAGACTATTACTTCACTGAGCGTACAAACAAATTTGTCAAGCA
TTGGCTTTATAATTTGCTAAAAGCTACATGGCACTGGTACAGGTTTGAAT
ATGCTTCTAGAGGTTCCATTCATTGTCATGGTGTTGCTAAACTAGAAGAC
GATCCAGGTTTGGTTGAATTAACAAATATTGCTCTGAAAGGTTACCTTGC
AtcgcaaaaattaaaatctgaGAATGTTGCTTTTCAGGAAAAAGAGTTGA
ATGAAATTATTGCTGAAGGTAGCCAGGCTGAGAAACAAGTGTGTGATTAT
GTTGATAAGCTTCTTTGTACTTGCAATCCTATGGAGGGAGAAAACTGGGT
CAAACCCCAGGTACATCCCTGTAAAGTGGATTATAGAAACTTAAATCCAG
AGGAAATGAGTACAGATTATGCCAATCTTGTTAACTCTGTCGAAAAACAT
CTTTGTAGTTCGGCATATTGTCTTCGGCAAAAAAATGATGACACAACATG
TCGATTTCACTTTCCTTTTGAAGTAAACGAGAAAACACATTTGGAATTTG
AAAAGGTGAAATCTAGAGATGGTGTTGAAAGGTTCAGAGCAAAAGTTGTA
ACTTCAAGAAATGACCCAAGAGTCAACAGGCACCAACGTGTTTTATTACA
AGGATGGAGAGCCAATGTTGATATCAGTGTAGTAGTTGATTACCACTCAT
GTGTTGAATATTTGACAAAGTATGCTTCTAAGCCAGAGAAGCTCAGTGAT
ATTACACAGGATGCGTTCACTCATGTGGCTTCAAAAGTAAACTCTGATAA
TTTTTCCCCAAGCTCTGCAATAAAGAAATTAATGATGAGATCGGTAGGTT
TACGTGATATGAGTGTTCAAGAGGTTTGCCATCAAATATTAGGATTGAAG
TATTACAGTAGTTCTTATGAAGTTTATTGCATGTCCTTAGATGGTTCTCG
ACAGGTTGAATTGGTTGATG Run BLAST on NCBI protein sequence of TCONS_00066286-protein >TCONS_00066286-protein ID=TCONS_00066286-protein|Name=TCONS_00066286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
EEDIRPDEMSSFVPSSLNTQMHKNKISHFINNIPELDIIGIEPINEFNTP
FLATMAFPTLFPDGKGDPTNLALERTIASNELENFSLKIRHLLKFCDVND
DNYFYRFAAHPRFAYWAFNILYRRRILSRGNLYIKRNPGEMNFTLDEFNE
MLNSNCANELMKKVFYYTKDVSGSRSFWNKVRNNLTATVKQVGVFTIFFT
FSMAEFHWPDLLSKFKVDVNDVNGIRKFITENPHVVDYYFTERTNKFVKH
WLYNLLKATWHWYRFEYASRGSIHCHGVAKLEDDPGLVELTNIALKGYLA
SQKLKSENVAFQEKELNEIIAEGSQAEKQVCDYVDKLLCTCNPMEGENWV
KPQVHPCKVDYRNLNPEEMSTDYANLVNSVEKHLCSSAYCLRQKNDDTTC
RFHFPFEVNEKTHLEFEKVKSRDGVERFRAKVVTSRNDPRVNRHQRVLLQ
GWRANVDISVVVDYHSCVEYLTKYASKPEKLSDITQDAFTHVASKVNSDN
FSPSSAIKKLMMRSVGLRDMSVQEVCHQILGLKYYSSSYEVYCMSLDGSR
QVELVD Run BLAST on NCBI transcript from alignment at scaffold_451:729086..730755 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066286 ID=TCONS_00066286|Name=TCONS_00066286|organism=Clytia hemisphaerica|type=transcript|length=1670bp|location=Sequence derived from alignment at scaffold_451:729086..730755 (Clytia hemisphaerica)
CATCAACCAATTCAACCTGTCGAGAACCATCTAAGGACATGCAATAAACT
TCATAAGAACTACTGTAATACTTCAATCCTAATATTTGATGGCAAACCTC
TTGAACACTCATATCACGTAAACCTACCGATCTCATCATTAATTTCTTTA
TTGCAGAGCTTGGGGAAAAATTATCAGAGTTTACTTTTGAAGCCACATGA
GTGAACGCATCCTGTGTAATATCACTGAGCTTCTCTGGCTTAGAAGCATA
CTTTGTCAAATATTCAACACATGAGTGGTAATCAACTACTACACTGATAT
CAACATTGGCTCTCCATCCTTGTAATAAAACACGTTGGTGCCTGTTGACT
CTTGGGTCATTTCTTGAAGTTACAACTTTTGCTCTGAACCTTTCAACACC
ATCTCTAGATTTCACCTTTTCAAATTCCAAATGTGTTTTCTCGTTTACTT
CAAAAGGAAAGTGAAATCGACATGTTGTGTCATCATTTTTTTGCCGAAGA
CAATATGCCGAACTACAAAGATGTTTTTCGACAGAGTTAACAAGATTGGC
ATAATCTGTACTCATTTCCTCTGGATTTAAGTTTCTATAATCCACTTTAC
AGGGATGTACCTGGGGTTTGACCCAGTTTTCTCCCTCCATAGGATTGCAA
GTACAAAGAAGCTTATCAACATAATCACACACTTGTTTCTCAGCCTGGCT
ACCTTCAGCAATAATTTCATTCAACTCTTTTTCCTGAAAAGCAACATTCt
cagattttaatttttgcgaTGCAAGGTAACCTTTCAGAGCAATATTTGTT
AATTCAACCAAACCTGGATCGTCTTCTAGTTTAGCAACACCATGACAATG
AATGGAACCTCTAGAAGCATATTCAAACCTGTACCAGTGCCATGTAGCTT
TTAGCAAATTATAAAGCCAATGCTTGACAAATTTGTTTGTACGCTCAGTG
AAGTAATAGTCTACTACATGAGGATTCTCTGTAATAAATTTTCTTATTCC
ATTCACATCATTGACATCTACTTTAAATTTACTCAAAAGATCTGGCCAGT
GAAACTCTGCCAtagaaaatgtgaaaaaaattgtaaataccCCAACTTGT
TTAACTGTTGCTGTCAGATTGTTTCGTACTTTGTTCCAAAAAGAACGTGA
TCCACTTACATCTTTGGTGtaataaaatacctttttcaTCAATTCATTAG
CACAGTTAGAGTTTAACATTTCATTGAATTCATCCAAAGTAAAATTCATT
TCCCCTGGATTCCTTTTAATGTACAAATTTCCCCTGCTCAAAATTCTTCT
ACGATACAATATGTTGAAAGCCCAGTAGGCAAATCTAGGATGTGCAGCAA
AACGATAGAAGTAATTGTCATCATTGACATCACAGAATTTGAGTAAATGA
CGAATCTTTAATGAAAAGTTTTCAAGTTCATTAGACGCTATAGTTCTTTC
CAAGGCAAGGTTAGTTGGATCACCTTTGCCATCAGGAAATAGAGTTGGAA
AAGCCATAGTAGCTAAAAATGGAGTATTGAATTCATTGATTGGTTCAATA
CCAATAATATCCAGTTCAGGGATATTGTTGataaaatgagaaattttgtt
tttatgcaTTTGTGTGTTCAAAGAAGAAGGTACAAATGAACTCATTTCAT
CAGGCCTTatgtcttcttca Coding sequence (CDS) from alignment at scaffold_451:729086..730755 >TCONS_00066286 ID=TCONS_00066286|Name=TCONS_00066286|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_451:729086..730755 (Clytia hemisphaerica)
ATCAACCAATTCAACCTGTCGAGAACCATCTAAGGACATGCAATAAACTT
CATAAGAACTACTGTAATACTTCAATCCTAATATTTGATGGCAAACCTCT
TGAACACTCATATCACGTAAACCTACCGATCTCATCATTAATTTCTTTAT
TGCAGAGCTTGGGGAAAAATTATCAGAGTTTACTTTTGAAGCCACATGAG
TGAACGCATCCTGTGTAATATCACTGAGCTTCTCTGGCTTAGAAGCATAC
TTTGTCAAATATTCAACACATGAGTGGTAATCAACTACTACACTGATATC
AACATTGGCTCTCCATCCTTGTAATAAAACACGTTGGTGCCTGTTGACTC
TTGGGTCATTTCTTGAAGTTACAACTTTTGCTCTGAACCTTTCAACACCA
TCTCTAGATTTCACCTTTTCAAATTCCAAATGTGTTTTCTCGTTTACTTC
AAAAGGAAAGTGAAATCGACATGTTGTGTCATCATTTTTTTGCCGAAGAC
AATATGCCGAACTACAAAGATGTTTTTCGACAGAGTTAACAAGATTGGCA
TAATCTGTACTCATTTCCTCTGGATTTAAGTTTCTATAATCCACTTTACA
GGGATGTACCTGGGGTTTGACCCAGTTTTCTCCCTCCATAGGATTGCAAG
TACAAAGAAGCTTATCAACATAATCACACACTTGTTTCTCAGCCTGGCTA
CCTTCAGCAATAATTTCATTCAACTCTTTTTCCTGAAAAGCAACATTCtc
agattttaatttttgcgaTGCAAGGTAACCTTTCAGAGCAATATTTGTTA
ATTCAACCAAACCTGGATCGTCTTCTAGTTTAGCAACACCATGACAATGA
ATGGAACCTCTAGAAGCATATTCAAACCTGTACCAGTGCCATGTAGCTTT
TAGCAAATTATAAAGCCAATGCTTGACAAATTTGTTTGTACGCTCAGTGA
AGTAATAGTCTACTACATGAGGATTCTCTGTAATAAATTTTCTTATTCCA
TTCACATCATTGACATCTACTTTAAATTTACTCAAAAGATCTGGCCAGTG
AAACTCTGCCAtagaaaatgtgaaaaaaattgtaaataccCCAACTTGTT
TAACTGTTGCTGTCAGATTGTTTCGTACTTTGTTCCAAAAAGAACGTGAT
CCACTTACATCTTTGGTGtaataaaatacctttttcaTCAATTCATTAGC
ACAGTTAGAGTTTAACATTTCATTGAATTCATCCAAAGTAAAATTCATTT
CCCCTGGATTCCTTTTAATGTACAAATTTCCCCTGCTCAAAATTCTTCTA
CGATACAATATGTTGAAAGCCCAGTAGGCAAATCTAGGATGTGCAGCAAA
ACGATAGAAGTAATTGTCATCATTGACATCACAGAATTTGAGTAAATGAC
GAATCTTTAATGAAAAGTTTTCAAGTTCATTAGACGCTATAGTTCTTTCC
AAGGCAAGGTTAGTTGGATCACCTTTGCCATCAGGAAATAGAGTTGGAAA
AGCCATAGTAGCTAAAAATGGAGTATTGAATTCATTGATTGGTTCAATAC
CAATAATATCCAGTTCAGGGATATTGTTGataaaatgagaaattttgttt
ttatgcaTTTGTGTGTTCAAAGAAGAAGGTACAAATGAACTCATTTCATC
AGGCCTTatgtcttcttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066286-exon-scaffold_451-1491911889:729086..730755 | TCONS_00066286-exon-scaffold_451-1491911889:729086..730755 | Clytia hemisphaerica | exon |
| TCONS_00066286-exon-scaffold_451-1510915933:729086..730755 | TCONS_00066286-exon-scaffold_451-1510915933:729086..730755 | Clytia hemisphaerica | exon |
| TCONS_00066286-exon-scaffold_451-1575043694:729086..730755 | TCONS_00066286-exon-scaffold_451-1575043694:729086..730755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:729086..730755 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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