TCONS_00066278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066278
Unique NameTCONS_00066278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066278 ID=TCONS_00066278|Name=TCONS_00066278|organism=Clytia hemisphaerica|type=transcript|length=625bp
ATGGATGGTGCGTTCATTTCTCGGAGGTATGGGTATAAGAAATTCATTGA
TTGCGAATATTCAAGTCCACTCACGAATGTAGTCAAGTAGAAAAATATCG
TTTCCGGTCGGGACAGAGTTCTGAACAAGGTTTTACGCAAGTTATTTCTA
GATTTGTTCAAGCTGATATNGGTCGGGACAGAGTTCTGATCAAGGTTTTA
CGCAAGTTATTTCTAGATTTGTTCAAGCTGATATCAttcttttcgtattt
ttggCTTCCTAACAGCCTTTTCTGGTCTGTTGTCTGCTCACGTTGATCTT
CACAATCAGTATCAAGGTCTGTAGGCTTGCTGTAAAAAGACAGTCCTTGG
AATAGAGATATAGTAGAGATACAATAACATACAGTGAACAGACCATAGAC
TACAAAGATACCAGTATAGCAAGTTATGTTCGATGCTGGGAAATAATCGA
TTGCCAGGTTGGTAATCAGGATTCCAAATGCTCCACCGAAGCTGGAAAAC
ATTCGTTGTCGGCCGTAAGCTACTGGGCGTGTTGTGGCTAACTGGCTACG
CCGCATTGTTCCAGAGTCTACAAAGCCCACTGCACTCCCTTCAGCAAATG
ATAAGATAAAGTTGATTGAAAACAT
Run BLAST on NCBI

protein sequence of TCONS_00066278-protein

>TCONS_00066278-protein ID=TCONS_00066278-protein|Name=TCONS_00066278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MFSINFILSFAEGSAVGFVDSGTMRRSQLATTRPVAYGRQRMFSSFGGAF
GILITNLAIDYFPASNITCYTGIFVVYGLFTVCYCISTISLFQGLSFYSK
PTDLDTDCEDQREQTTDQKRLLGSQKYEKNDISLNKSRNNLRKTLIRTLS
RXISA
Run BLAST on NCBI

transcript from alignment at scaffold_451:468576..469200

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066278 ID=TCONS_00066278|Name=TCONS_00066278|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at scaffold_451:468576..469200 (Clytia hemisphaerica)
ATGTTTTCAATCAACTTTATCTTATCATTTGCTGAAGGGAGTGCAGTGGG
CTTTGTAGACTCTGGAACAATGCGGCGTAGCCAGTTAGCCACAACACGCC
CAGTAGCTTACGGCCGACAACGAATGTTTTCCAGCTTCGGTGGAGCATTT
GGAATCCTGATTACCAACCTGGCAATCGATTATTTCCCAGCATCGAACAT
AACTTGCTATACTGGTATCTTTGTAGTCTATGGTCTGTTCACTGTATGTT
ATTGTATCTCTACTATATCTCTATTCCAAGGACTGTCTTTTTACAGCAAG
CCTACAGACCTTGATACTGATTGTGAAGATCAACGTGAGCAGACAACAGA
CCAGAAAAGGCTGTTAGGAAGccaaaaatacgaaaagaaTGATATCAGCT
TGAACAAATCTAGAAATAACTTGCGTAAAACCTTGATCAGAACTCTGTCC
CGACCNATATCAGCTTGAACAAATCTAGAAATAACTTGCGTAAAACCTTG
TTCAGAACTCTGTCCCGACCGGAAACGATATTTTTCTACTTGACTACATT
CGTGAGTGGACTTGAATATTCGCAATCAATGAATTTCTTATACCCATACC
TCCGAGAAATGAACGCACCATCCAT

Coding sequence (CDS) from alignment at scaffold_451:468576..469200

>TCONS_00066278 ID=TCONS_00066278|Name=TCONS_00066278|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_451:468576..469200 (Clytia hemisphaerica)
ATGTTTTCAATCAACTTTATCTTATCATTTGCTGAAGGGAGTGCAGTGGG
CTTTGTAGACTCTGGAACAATGCGGCGTAGCCAGTTAGCCACAACACGCC
CAGTAGCTTACGGCCGACAACGAATGTTTTCCAGCTTCGGTGGAGCATTT
GGAATCCTGATTACCAACCTGGCAATCGATTATTTCCCAGCATCGAACAT
AACTTGCTATACTGGTATCTTTGTAGTCTATGGTCTGTTCACTGTATGTT
ATTGTATCTCTACTATATCTCTATTCCAAGGACTGTCTTTTTACAGCAAG
CCTACAGACCTTGATACTGATTGTGAAGATCAACGTGAGCAGACAACAGA
CCAGAAAAGGCTGTTAGGAAGccaaaaatacgaaaagaaTGATATCAGCT
TGAACAAATCTAGAAATAACTTGCGTAAAACCTTGATCAGAACTCTGTCC
CGACCNATATCAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041480XLOC_041480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066278-exon-scaffold_451-1491911889:468576..469200TCONS_00066278-exon-scaffold_451-1491911889:468576..469200Clytia hemisphaericaexon
TCONS_00066278-exon-scaffold_451-1510915933:468576..469200TCONS_00066278-exon-scaffold_451-1510915933:468576..469200Clytia hemisphaericaexon
TCONS_00066278-exon-scaffold_451-1575043694:468576..469200TCONS_00066278-exon-scaffold_451-1575043694:468576..469200Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066278-proteinTCONS_00066278-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:468576..469200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0965618	0	0.115009	0.181763	0.657869	1.23178	2.29972	1.9584	1.64166	0.795172	2.83595	2.47394	0.677971	1.3512	0.192065	0.393721	1.99447	0	0	0	0	0.444499	0.824082	0.572035	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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