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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066258 ID=TCONS_00066258|Name=TCONS_00066258|organism=Clytia hemisphaerica|type=transcript|length=1514bp
CCGCTTTGATGATGGAgtcattaaaatatttcttgtactATGCACTTATT
CTAATCTTCTACAACGAGAGTGTTTGCAGTCAACAACGACACATGTTTTC
ACCGAATATTCGTTACCAAGGCTCTCACGGCAACGCGTCATTCAACTATA
GTTATATCAATCTCAAATATCTGAAAGGATATAAATTGGATATTGCACCT
TTGGCAACATACAACGTCCATAACAAATCACAATGCGCCaaagaatgcct
aaaaactaaagGTGATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCTG
GATTTGAATGTGAAATCCTTGGGGAAGACATTTACACATCTGACTTTCGA
TTGGTAGAAGACAGCTCCATAACACATTTTATTATAGCCAATAAGTGCTT
ACAGAATCCATGCAGACGAGGATCCAAATGTGTTCCCATTTATCAGAACA
ATAGTTATTATTGTGCAAatTCGAGCTGTAGAATAATGAAGAAAATTGAG
CCTCGTTTATCTACTGGTTATTATGATGTGTTAATTGCTGGAAAATGGAG
AAAAGTCTTTTGTGATATGGACGAAGACGGGGGTGGTTGGATGTTGGTCG
GAAATTACTCAGTCCCATCAACACAAGTTGGACCGGAAATCAATTACGGT
GATCTAGATTCATTCGCAGAGCTTTCCACTGGAAACTTTCTTCTTGATTC
GAACATCTATCTTCCCGTCATCGATTCTTCATCACCAATCAATGAATTCA
GATTCAACTGTTACAAACCGTCAACGAATAGAGTTGTGGATATCACTACA
GATCCTAGCACTCATTGGGGAGCTTACATCAATCGTTATATCTTAGGACG
GGAAATGAGAACGTCTTGTCAACCACCATGCGGAATTCGAGCTTTAACCA
AcgataaaagtgaaatttcaacCAAAGTGAACCGTATTGGTCACAGTACT
ATTGTGCAGCTCTTCTACGGACCAGCTGTTTTCGAACATGCGACGAGGCA
CATCTATCTCCAAGACAGTTTGAACTACCATGATTGTGATGACACAACTA
TTCCTGGTAATATAGATCAAAACCCTTGGCATGAGGGGTATTGGAAGTTT
TTCGTGAGGTGTTAGCCACGTTCACAACTAAACGTTCTTTCGCAATGACG
TCTATTGGATCATTACATTTCATATCTATACATGGGATAGATGAACCTTT
CCATACGAGAAtaattggtccagcgcgcagcagaatggacctttaaaaag
caactgtgcgcgcaataaattaacaagtccaggatAAACCAACcaccgat
ctagaatttttgccccgcctacccgcgcgatgtttgacctatgttttgga
ttgaaatgGTTGTAGAAgcaaatttcccggttagattaaagggttgtttc
aggtagggtcaggtagggttagggctagactagtaaactagtcggttatt
acttataaccttataataaaactgtcaatcaaataatgtaaacactaatt
aaatattcagcgcg Run BLAST on NCBI protein sequence of TCONS_00066258-protein >TCONS_00066258-protein ID=TCONS_00066258-protein|Name=TCONS_00066258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
ALMMESLKYFLYYALILIFYNESVCSQQRHMFSPNIRYQGSHGNASFNYS
YINLKYLKGYKLDIAPLATYNVHNKSQCAKECLKTKGDCKSTNLREMSAG
FECEILGEDIYTSDFRLVEDSSITHFIIANKCLQNPCRRGSKCVPIYQNN
SYYCANSSCRIMKKIEPRLSTGYYDVLIAGKWRKVFCDMDEDGGGWMLVG
NYSVPSTQVGPEINYGDLDSFAELSTGNFLLDSNIYLPVIDSSSPINEFR
FNCYKPSTNRVVDITTDPSTHWGAYINRYILGREMRTSCQPPCGIRALTN
DKSEISTKVNRIGHSTIVQLFYGPAVFEHATRHIYLQDSLNYHDCDDTTI
PGNIDQNPWHEGYWKFFVRC Run BLAST on NCBI transcript from alignment at scaffold_451:1170378..1173498- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066258 ID=TCONS_00066258|Name=TCONS_00066258|organism=Clytia hemisphaerica|type=transcript|length=3121bp|location=Sequence derived from alignment at scaffold_451:1170378..1173498- (Clytia hemisphaerica)
CCGCTTTGATGATGGAGTCATTAAAATATTTCTTGTACTATGCACTTATT
CTAATCTTCTACAACGAGAGTGTTTGCAGTCAACAACGACACATGTTTTC
ACCGAATATTCGTTACCAAGGCTCTCACGGCAACGCGTCATTCAACTATA
GTTATATCAATCTCAAATATCTGAAAGGATATAAATTGGATATTGCACCT
TTGGCAACATACAACGTCCATAACAAATCACAATGCGCCAAAGAATGCCT
AAAAACTAAAGGTGATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCTG
GATTTGAATGTGAAATCCTTGGGGAAGACATTTACACATCTGACTTTCGA
TTGGTAGAAGACAGCTCCATAACACATTTTATTATAGCCGTAAGTTCTTT
AACCTCTAACCACCCCCGCCCCCTTATTAAACACGATTAATTGTCCCCAA
TGGGAGAAACATCCCGGAATTTCGTCTCCTTTGCCTACTTTGCAGGCCCG
TTAGAACAACCGTTAAAGTGGGGAGACTGAAGGCTCAAAATGAGATAAAT
TTTCTAGTAATTCTGAAATCTCATTTGATCAAAATCTCCCCAGTCTCCAC
ACTTCCGCTGGGCCTGTTTTGATATCTTTGAAACGTGTCGTTTCCTTCTG
TTTCTTTAGAATAAGTGCTTACAGAATCCATGCAGACGAGGATCCAAATG
TGTTCCCATTTATCAGAACAATAGTTATTATTGTGCAAGTGAGTACACGC
TTTTTTTTTATAAGAATGGTGTAAGGGGGGGAGTTGAGCTTTTACGGTGT
GACGGTATAACTTTTTTAGGAAAATCATTATTAGATTTAACATTTAGTAC
ATACGTCTTAAGCCTAAAATGGCATTTTTGGGAAAGGAGTGAGCCTTACT
TGGGGGTAATTGACAATTTATAGTTGAAAATGCTCTAAAAATGGCATTCT
TAGCTTGAGTAGAAAGTTCCAAGATGATATTCTTAGCATTATTCTTGAAT
TTTTGGCCATTTTCATCATGGACATTTTTATAAAGTGTATTCTTATTAAA
ATAAAGCGTGTTACACGATTTTTTATAAGAACATCCAGGATTTTTGAAGC
GGTCGGATTATTTTACTTTTTGAGTTTTAAGCCCAAAATGTTCTTAGAAT
GTTCTTATTTTCACGTAGATTGGAGAGCTTTTGCATGAATTTTTTTACGC
ATTTATGACGTTCTAAGATTGAAGAATTTGTGTTACAAAAATTGAGTACG
AGGCAAGTAATGTTCGTAACGTAATTTATGAAAAGGTCTATTTCTCTTTT
TTTAGATTCGAGCTGTAGAATAATGAAGAAAATTGAGCCTCGTTTATCTA
CTGGTTATTATGATGTGTTAATTGCTGGAAAATGGAGAAAAGTCTTTTGT
GATATGGACGAAGACGGGGGTATGACATTTCTTATTCAAATCAAGCCTGG
CGGAAATAGAGAAGCTGGGGTGGGGTTAAAGCCTCCCCACTTTTTAGCAT
AATAGACTTTTTTCTCTAATTCCTGGCGAATTTATCTCATTTTGAGCCTT
TAGCCCCATCTACTTTTACGGTTGTTCCACAATAATCTACTTCAATCATG
TCCCTTAAAACGACCCTTTGTCACATCACAGATCCAAAGGAAGTTTATTT
TGAGATACCGGCGTAAAAGGGGCTATTTCATCTGATTTCATACGATTTGC
GTATCTGTTATGCTATATCTAAAGGGAAAAAATGCACAAATCTGCGCATA
TTTCCTTTCAAGAAAGACATTGAAAAAATGCCATCATTCACCAAAATTCA
AGAGCTCTTGTCGTTGTCTTTGTAAATCTTATATCTCAATTCACAAAAGA
GTGCTCAACCATAAATAGTTGATTACTTCAGTGATGTAGAAAAATTTCAT
GTACTAAAAACACCCCCTTCTCACAGACCCGGTAGGATTTTTTCAGCCAG
TAGGGATAAAAATAACAGATTGAAACTCGATGGAGATTGATATTAGCGGA
AATATCTAACTAAACGACGTTTGATAGCTTGAACGGTCAACTTGATTTTC
TTTATGATGAAACATATAGATGAACCCATAGTCTGCGGCCGGGTCAGAAA
ATTTTTCTTTCTAACCCGGTCGGTTTCCGGAAACACTACATTTGTTTACT
TTCGCCTCATAACAAAGTAAACTCATTTAATCATCTTAGGTGGTTGGATG
TTGGTCGGAAATTACTCAGTCCCATCAACACAAGTTGGACCGGAAATCAA
TTACGGTGATCTAGATTCATTCGCAGAGCTTTCCACTGGAAACTTTCTTC
TTGATTCGAACATCTATCTTCCCGTCATCGATTCTTCATCACCAATCAAT
GAATTCAGATTCAACTGTTACAAACCGTCAACGAATAGAGTTGTGGATAT
CACTACAGATCCTAGCACTCATTGGGGAGCTTACATCAATCGTTATATCT
TAGGACGGGAAATGAGAACGTCTTGTCAACCACCATGCGGAATTCGAGCT
TTAACCAACGATAAAAGTGAAATTTCAACCAAAGTGAACCGTATTGGTCA
CAGTACTATTGTGCAGCTCTTCTACGGACCAGCTGTTTTCGAACATGCGA
CGAGGCACATCTATCTCCAAGACAGTTTGAACTACCATGATTGTGATGAC
ACAACTATTCCTGGTAATATAGATCAAAACCCTTGGCATGAGGGGTATTG
GAAGTTTTTCGTGAGGTGTTAGCCACGTTCACAACTAAACGTTCTTTCGC
AATGACGTCTATTGGATCATTACATTTCATATCTATACATGGGATAGATG
AACCTTTCCATACGAGAATAATTGGTCCAGCGCGCAGCAGAATGGACCTT
TAAAAAGCAACTGTGCGCGCAATAAATTAACAAGTCCAGGATAAACCAAC
CACCGATCTAGAATTTTTGCCCCGCCTACCCGCGCGATGTTTGACCTATG
TTTTGGATTGAAATGGTTGTAGAAGCAAATTTCCCGGTTAGATTAAAGGG
TTGTTTCAGGTAGGGTCAGGTAGGGTTAGGGCTAGACTAGTAAACTAGTC
GGTTATTACTTATAACCTTATAATAAAACTGTCAATCAAATAATGTAAAC
ACTAATTAAATATTCAGCGCG Coding sequence (CDS) from alignment at scaffold_451:1170378..1173498- >TCONS_00066258 ID=TCONS_00066258|Name=TCONS_00066258|organism=Clytia hemisphaerica|type=CDS|length=4452bp|location=Sequence derived from alignment at scaffold_451:1170378..1173498- (Clytia hemisphaerica)
GTGGTTGGATGTTGGTCGGAAATTACTCAGTCCCATCAACACAAGTTGGA
CCGGAAATCAATTACGGTGATCTAGATTCATTCGCAGAGCTTTCCACTGG
AAACTTTCTTCTTGATTCGAACATCTATCTTCCCGTCATCGATTCTTCAT
CACCAATCAATGAATTCAGATTCAACTGTTACAAACCGTCAACGAATAGA
GTTGTGGATATCACTACAGATCCTAGCACTCATTGGGGAGCTTACATCAA
TCGTTATATCTTAGGACGGGAAATGAGAACGTCTTGTCAACCACCATGCG
GAATTCGAGCTTTAACCAACGATAAAAGTGAAATTTCAACCAAAGTGAAC
CGTATTGGTCACAGTACTATTGTGCAGCTCTTCTACGGACCAGCTGTTTT
CGAACATGCGACGAGGCACATCTATCTCCAAGACAGTTTGAACTACCATG
ATTGTGATGACACAACTATTCCTGGTAATATAGATCAAAACCCTTGGCAT
GAGGGGTATTGGAAGTTTTTCGTGAGGTGTTAGATTCGAGCTGTAGAATA
ATGAAGAAAATTGAGCCTCGTTTATCTACTGGTTATTATGATGTGTTAAT
TGCTGGAAAATGGAGAAAAGTCTTTTGTGATATGGACGAAGACGGGGAAT
AAGTGCTTACAGAATCCATGCAGACGAGGATCCAAATGTGTTCCCATTTA
TCAGAACAATAGTTATTATTGTGCAAGCTTTGATGATGGAGTCATTAAAA
TATTTCTTGTACTATGCACTTATTCTAATCTTCTACAACGAGAGTGTTTG
CAGTCAACAACGACACATGTTTTCACCGAATATTCGTTACCAAGGCTCTC
ACGGCAACGCGTCATTCAACTATAGTTATATCAATCTCAAATATCTGAAA
GGATATAAATTGGATATTGCACCTTTGGCAACATACAACGTCCATAACAA
ATCACAATGCGCCAAAGAATGCCTAAAAACTAAAGGTGATTGCAAGAGTA
CAAATCTCCGAGAAATGAGCGCTGGATTTGAATGTGAAATCCTTGGGGAA
GACATTTACACATCTGACTTTCGATTGGTAGAAGACAGCTCCATAACACA
TTTTATTATAGCCGTGGTTGGATGTTGGTCGGAAATTACTCAGTCCCATC
AACACAAGTTGGACCGGAAATCAATTACGGTGATCTAGATTCATTCGCAG
AGCTTTCCACTGGAAACTTTCTTCTTGATTCGAACATCTATCTTCCCGTC
ATCGATTCTTCATCACCAATCAATGAATTCAGATTCAACTGTTACAAACC
GTCAACGAATAGAGTTGTGGATATCACTACAGATCCTAGCACTCATTGGG
GAGCTTACATCAATCGTTATATCTTAGGACGGGAAATGAGAACGTCTTGT
CAACCACCATGCGGAATTCGAGCTTTAACCAACGATAAAAGTGAAATTTC
AACCAAAGTGAACCGTATTGGTCACAGTACTATTGTGCAGCTCTTCTACG
GACCAGCTGTTTTCGAACATGCGACGAGGCACATCTATCTCCAAGACAGT
TTGAACTACCATGATTGTGATGACACAACTATTCCTGGTAATATAGATCA
AAACCCTTGGCATGAGGGGTATTGGAAGTTTTTCGTGAGGTGTTAGATTC
GAGCTGTAGAATAATGAAGAAAATTGAGCCTCGTTTATCTACTGGTTATT
ATGATGTGTTAATTGCTGGAAAATGGAGAAAAGTCTTTTGTGATATGGAC
GAAGACGGGGAATAAGTGCTTACAGAATCCATGCAGACGAGGATCCAAAT
GTGTTCCCATTTATCAGAACAATAGTTATTATTGTGCAAGCTTTGATGAT
GGAGTCATTAAAATATTTCTTGTACTATGCACTTATTCTAATCTTCTACA
ACGAGAGTGTTTGCAGTCAACAACGACACATGTTTTCACCGAATATTCGT
TACCAAGGCTCTCACGGCAACGCGTCATTCAACTATAGTTATATCAATCT
CAAATATCTGAAAGGATATAAATTGGATATTGCACCTTTGGCAACATACA
ACGTCCATAACAAATCACAATGCGCCAAAGAATGCCTAAAAACTAAAGGT
GATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCTGGATTTGAATGTGA
AATCCTTGGGGAAGACATTTACACATCTGACTTTCGATTGGTAGAAGACA
GCTCCATAACACATTTTATTATAGCCGTGGTTGGATGTTGGTCGGAAATT
ACTCAGTCCCATCAACACAAGTTGGACCGGAAATCAATTACGGTGATCTA
GATTCATTCGCAGAGCTTTCCACTGGAAACTTTCTTCTTGATTCGAACAT
CTATCTTCCCGTCATCGATTCTTCATCACCAATCAATGAATTCAGATTCA
ACTGTTACAAACCGTCAACGAATAGAGTTGTGGATATCACTACAGATCCT
AGCACTCATTGGGGAGCTTACATCAATCGTTATATCTTAGGACGGGAAAT
GAGAACGTCTTGTCAACCACCATGCGGAATTCGAGCTTTAACCAACGATA
AAAGTGAAATTTCAACCAAAGTGAACCGTATTGGTCACAGTACTATTGTG
CAGCTCTTCTACGGACCAGCTGTTTTCGAACATGCGACGAGGCACATCTA
TCTCCAAGACAGTTTGAACTACCATGATTGTGATGACACAACTATTCCTG
GTAATATAGATCAAAACCCTTGGCATGAGGGGTATTGGAAGTTTTTCGTG
AGGTGTTAGATTCGAGCTGTAGAATAATGAAGAAAATTGAGCCTCGTTTA
TCTACTGGTTATTATGATGTGTTAATTGCTGGAAAATGGAGAAAAGTCTT
TTGTGATATGGACGAAGACGGGGAATAAGTGCTTACAGAATCCATGCAGA
CGAGGATCCAAATGTGTTCCCATTTATCAGAACAATAGTTATTATTGTGC
AAGCTTTGATGATGGAGTCATTAAAATATTTCTTGTACTATGCACTTATT
CTAATCTTCTACAACGAGAGTGTTTGCAGTCAACAACGACACATGTTTTC
ACCGAATATTCGTTACCAAGGCTCTCACGGCAACGCGTCATTCAACTATA
GTTATATCAATCTCAAATATCTGAAAGGATATAAATTGGATATTGCACCT
TTGGCAACATACAACGTCCATAACAAATCACAATGCGCCAAAGAATGCCT
AAAAACTAAAGGTGATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCTG
GATTTGAATGTGAAATCCTTGGGGAAGACATTTACACATCTGACTTTCGA
TTGGTAGAAGACAGCTCCATAACACATTTTATTATAGCCGTGGTTGGATG
TTGGTCGGAAATTACTCAGTCCCATCAACACAAGTTGGACCGGAAATCAA
TTACGGTGATCTAGATTCATTCGCAGAGCTTTCCACTGGAAACTTTCTTC
TTGATTCGAACATCTATCTTCCCGTCATCGATTCTTCATCACCAATCAAT
GAATTCAGATTCAACTGTTACAAACCGTCAACGAATAGAGTTGTGGATAT
CACTACAGATCCTAGCACTCATTGGGGAGCTTACATCAATCGTTATATCT
TAGGACGGGAAATGAGAACGTCTTGTCAACCACCATGCGGAATTCGAGCT
TTAACCAACGATAAAAGTGAAATTTCAACCAAAGTGAACCGTATTGGTCA
CAGTACTATTGTGCAGCTCTTCTACGGACCAGCTGTTTTCGAACATGCGA
CGAGGCACATCTATCTCCAAGACAGTTTGAACTACCATGATTGTGATGAC
ACAACTATTCCTGGTAATATAGATCAAAACCCTTGGCATGAGGGGTATTG
GAAGTTTTTCGTGAGGTGTTAGATTCGAGCTGTAGAATAATGAAGAAAAT
TGAGCCTCGTTTATCTACTGGTTATTATGATGTGTTAATTGCTGGAAAAT
GGAGAAAAGTCTTTTGTGATATGGACGAAGACGGGGAATAAGTGCTTACA
GAATCCATGCAGACGAGGATCCAAATGTGTTCCCATTTATCAGAACAATA
GTTATTATTGTGCAAGCTTTGATGATGGAGTCATTAAAATATTTCTTGTA
CTATGCACTTATTCTAATCTTCTACAACGAGAGTGTTTGCAGTCAACAAC
GACACATGTTTTCACCGAATATTCGTTACCAAGGCTCTCACGGCAACGCG
TCATTCAACTATAGTTATATCAATCTCAAATATCTGAAAGGATATAAATT
GGATATTGCACCTTTGGCAACATACAACGTCCATAACAAATCACAATGCG
CCAAAGAATGCCTAAAAACTAAAGGTGATTGCAAGAGTACAAATCTCCGA
GAAATGAGCGCTGGATTTGAATGTGAAATCCTTGGGGAAGACATTTACAC
ATCTGACTTTCGATTGGTAGAAGACAGCTCCATAACACATTTTATTATAG
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066258-exon-scaffold_451-1575043694:1173110..1173498 | TCONS_00066258-exon-scaffold_451-1575043694:1173110..1173498 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1575043694:1172761..1172839 | TCONS_00066258-exon-scaffold_451-1575043694:1172761..1172839 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1575043694:1172080..1172193 | TCONS_00066258-exon-scaffold_451-1575043694:1172080..1172193 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1575043694:1170378..1171309 | TCONS_00066258-exon-scaffold_451-1575043694:1170378..1171309 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1510915933:1173110..1173498 | TCONS_00066258-exon-scaffold_451-1510915933:1173110..1173498 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1510915933:1172761..1172839 | TCONS_00066258-exon-scaffold_451-1510915933:1172761..1172839 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1510915933:1172080..1172193 | TCONS_00066258-exon-scaffold_451-1510915933:1172080..1172193 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1510915933:1170378..1171309 | TCONS_00066258-exon-scaffold_451-1510915933:1170378..1171309 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1491911889:1173110..1173498 | TCONS_00066258-exon-scaffold_451-1491911889:1173110..1173498 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1491911889:1172761..1172839 | TCONS_00066258-exon-scaffold_451-1491911889:1172761..1172839 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1491911889:1172080..1172193 | TCONS_00066258-exon-scaffold_451-1491911889:1172080..1172193 | Clytia hemisphaerica | exon |
| TCONS_00066258-exon-scaffold_451-1491911889:1170378..1171309 | TCONS_00066258-exon-scaffold_451-1491911889:1170378..1171309 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1170378..1173498 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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