TCONS_00066257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066257
Unique NameTCONS_00066257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066257 ID=TCONS_00066257|Name=TCONS_00066257|organism=Clytia hemisphaerica|type=transcript|length=667bp
tgaaaagtgaagaaaacaAGGACAATAAACAAGGATAAAGGAAAGATAAT
GGATTTGTTTGAAGACTTGGATGAAGATCGATGGGAAAATAAAGGCCATC
CACCTCTCGATCCTTCCAGCATTGAGGGCTACACATCATATATCGTATTT
CAACGGCAAATTGTAGAAGACGCGAAAACTATGATATTATATTTGAAGAC
AGAACAAGGAAGACCGTTGCAAGTCAAACTTTCCAATTTCAAACCGGACA
GAAATCCAATGAAAGGTGTCCGAAATTGTTGTTTGAAAAtatgtgaaaat
gaaattgttggtATCATGATGGACAGAGATTGGGTAGAAGCAAAATGAGC
GACTGGATAGTAGTTGAATGAATACAAATTACTTAACGAGTGATTATACG
ACTGAATTGATATTCAACTTTCTTTGTATATatgttttatttatatttta
ttctgtaaaagaaaatgaagaatttctATATTTGAGCGGTGGCACGACTC
ACCattagacacccctgtctcacagccccggtggaactttttttctcagt
gggaATAAAACTTCCTATTGAAATTCCTTTTCTCCAAGGTTACAAAATTC
AGTGCAAACtcagtgcaatttttaaacattgaatttcgaatgcggTTGAA
ATTAAAGTTAATTTCCA
Run BLAST on NCBI

protein sequence of TCONS_00066257-protein

>TCONS_00066257-protein ID=TCONS_00066257-protein|Name=TCONS_00066257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MDLFEDLDEDRWENKGHPPLDPSSIEGYTSYIVFQRQIVEDAKTMILYLK
TEQGRPLQVKLSNFKPDRNPMKGVRNCCLKICENEIVGIMMDRDWVEAK
Run BLAST on NCBI

transcript from alignment at scaffold_451:1157189..1158096-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066257 ID=TCONS_00066257|Name=TCONS_00066257|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at scaffold_451:1157189..1158096- (Clytia hemisphaerica)
TGAAAAGTGAAGAAAACAAGGACAATAAACAAGGATAAAGGAAAGATAAT
GGATTTGTTTGAAGACTTGGATGAAGATCGATGGGAAAATAAAGGCCATC
CACCTCTCGATCCTTCCAGCATTGGTAAGATATTCTATTCAAAATCATGA
TCATTAGAAAGTGAAATTGTGTATTTAAGAGCAAATGACCCCTTGTTAGA
CATTAGTAAGCTTTTTAATCTCTTTTAAAGCGTTATTTGGTTATTGAAAA
GGTTGAGGAGCTCAATTTTTGTGGACACACTGTGTATGCAACATAAGCTT
GAAAATATTTTGGGATAGTATCTCTCTCTCCTCTCTTACTGACCCTTTAT
AATATCTCTTTTCAGAGGGCTACACATCATATATCGTATTTCAACGGCAA
ATTGTAGAAGACGCGAAAACTATGATATTATATTTGAAGACAGAACAAGG
AAGACCGTTGCAAGTCAAACTTTCCAATTTCAAACCGGACAGAAATCCAA
TGAAAGGTGTCCGAAATTGTTGTTTGAAAATATGTGAAAATGAAATTGTT
GGTATCATGATGGACAGAGATTGGGTAGAAGCAAAATGAGCGACTGGATA
GTAGTTGAATGAATACAAATTACTTAACGAGTGATTATACGACTGAATTG
ATATTCAACTTTCTTTGTATATATGTTTTATTTATATTTTATTCTGTAAA
AGAAAATGAAGAATTTCTATATTTGAGCGGTGGCACGACTCACCATTAGA
CACCCCTGTCTCACAGCCCCGGTGGAACTTTTTTTCTCAGTGGGAATAAA
ACTTCCTATTGAAATTCCTTTTCTCCAAGGTTACAAAATTCAGTGCAAAC
TCAGTGCAATTTTTAAACATTGAATTTCGAATGCGGTTGAAATTAAAGTT
AATTTCCA

Coding sequence (CDS) from alignment at scaffold_451:1157189..1158096-

>TCONS_00066257 ID=TCONS_00066257|Name=TCONS_00066257|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_451:1157189..1158096- (Clytia hemisphaerica)
AGGGCTACACATCATATATCGTATTTCAACGGCAAATTGTAGAAGACGCG
AAAACTATGATATTATATTTGAAGACAGAACAAGGAAGACCGTTGCAAGT
CAAACTTTCCAATTTCAAACCGGACAGAAATCCAATGAAAGGTGTCCGAA
ATTGTTGTTTGAAAATATGTGAAAATGAAATTGTTGGTATCATGATGGAC
AGAGATTGGGTAGAAGCAAAATGAATGGATTTGTTTGAAGACTTGGATGA
AGATCGATGGGAAAATAAAGGCCATCCACCTCTCGATCCTTCCAGCATTG
AGGGCTACACATCATATATCGTATTTCAACGGCAAATTGTAGAAGACGCG
AAAACTATGATATTATATTTGAAGACAGAACAAGGAAGACCGTTGCAAGT
CAAACTTTCCAATTTCAAACCGGACAGAAATCCAATGAAAGGTGTCCGAA
ATTGTTGTTTGAAAATATGTGAAAATGAAATTGTTGGTATCATGATGGAC
AGAGATTGGGTAGAAGCAAAATGAATGGATTTGTTTGAAGACTTGGATGA
AGATCGATGGGAAAATAAAGGCCATCCACCTCTCGATCCTTCCAGCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041462XLOC_041462Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066257-proteinTCONS_00066257-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066257-exon-scaffold_451-1575043694:1157973..1158096TCONS_00066257-exon-scaffold_451-1575043694:1157973..1158096Clytia hemisphaericaexon
TCONS_00066257-exon-scaffold_451-1575043694:1157189..1157731TCONS_00066257-exon-scaffold_451-1575043694:1157189..1157731Clytia hemisphaericaexon
TCONS_00066257-exon-scaffold_451-1510915933:1157973..1158096TCONS_00066257-exon-scaffold_451-1510915933:1157973..1158096Clytia hemisphaericaexon
TCONS_00066257-exon-scaffold_451-1510915933:1157189..1157731TCONS_00066257-exon-scaffold_451-1510915933:1157189..1157731Clytia hemisphaericaexon
TCONS_00066257-exon-scaffold_451-1491911889:1157973..1158096TCONS_00066257-exon-scaffold_451-1491911889:1157973..1158096Clytia hemisphaericaexon
TCONS_00066257-exon-scaffold_451-1491911889:1157189..1157731TCONS_00066257-exon-scaffold_451-1491911889:1157189..1157731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1157189..1158096 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232387	0.459077	0.656794	0.257422	0	0.247642	0	0.298861	0.7405	0.385434	0.0873877	0.274286	6.0824	4.20178	0.150068	0.456036	0.0841511	0	6.69732	9.65009	0.29958	0.176907	35.2105	43.9832	33.7429	26.8153	0.950189	0.454678	0.0859771	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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