TCONS_00066255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066255
Unique NameTCONS_00066255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066255 ID=TCONS_00066255|Name=TCONS_00066255|organism=Clytia hemisphaerica|type=transcript|length=341bp
CTTTTGAACGATGAAGAAGAAATTAATCCACATAGTCATCACATTCATAA
TACTACCCTCTCTCATCACAGCAATTCATTATGATAAAGTGGACCTCACT
TTCATTTTCGATATGAGTGCAAATGGTACAGATCAATCTTTTGTTCTTGG
TACCCACACAAAGGTATCTCAACAAGATGTGGAAATCCCTTTGGACCGGT
TAATAGCATACCCGTATATTGTAGATGTGTCAGGTTATGTTTGGAGCGAT
GCGAACTTTCAATTAGAGATTCATCATTTAATGGAAATAGAACACAAGAA
AGGAGAAATTCCAGAAAATTCCGCTATAATTGTGTACACTG
Run BLAST on NCBI

protein sequence of TCONS_00066255-protein

>TCONS_00066255-protein ID=TCONS_00066255-protein|Name=TCONS_00066255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MKKKLIHIVITFIILPSLITAIHYDKVDLTFIFDMSANGTDQSFVLGTHT
KVSQQDVEIPLDRLIAYPYIVDVSGYVWSDANFQLEIHHLMEIEHKKGEI
PENSAIIVYT
Run BLAST on NCBI

transcript from alignment at scaffold_451:1077991..1078946-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066255 ID=TCONS_00066255|Name=TCONS_00066255|organism=Clytia hemisphaerica|type=transcript|length=956bp|location=Sequence derived from alignment at scaffold_451:1077991..1078946- (Clytia hemisphaerica)
CTTTTGAACGATGAAGAAGAAATTAATCCACATAGTCATCACATTCATAA
TACTACCCTCTCTCATCACAGCAATTCATTATGATAAAGTGGACCTCACT
TTCATTTTCGATATGAGTGCAAATGGTACAGATCAATCTTTTGTTCTTGG
TACCCACACAAAGGTATCTCAACAAGATGTGGAAATCCCTTTGGACCGGT
TAATAGCATACCCGTATATTGTAGATGTGTCAGGTGAGAATTGAAACCAC
AAATCTCATATTCATTTATACATACTAGACAAGGTTCAAAGAGAAACTTT
TTTGTGGCGCACATGGTATTTGGCACAAAAGGAGAATTTCCTCAAAACTT
TAAAACCGCAAGTGATTTTTAAGTGCTTTAAAGTACGGTTAGAAAGTAGA
GTCTTTACTCTGAGTTTTAACATTAGACTTACGACTTAGAATCACAGGAT
ATAGAAGCTCAAAATTTTTCCAATATCGCTGAGAATATAGCCTGGAAGCC
ACCTAACCCCTCCCAAATCGAAAAATCCATTGGAACAAAGTTGAAGTATT
GAAATTGCAATTCTTGCACGAGCTTTAAATTCTGAAAACATTATAAAATA
CCCCAAATTGACAATACAATTCGGCGCCGATTGTAGTTTTGAAATTGAAA
TACAAAATTAGTTGCAAACCCCCATTCTTTTTAGGGTGCTTCTGTATAAA
ACATTACGTAATGGATGCATCCGTACATCCTGTCCCCAAGTTCAGGAGTT
GCCATAAAGCCATTATGGTAATAACGGGGAGGGCACATTGCTATACATTG
CATAATGGATATCATGAATGTTATGTTGTTTTCATATTTTTATATCAGGT
TATGTTTGGAGCGATGCGAACTTTCAATTAGAGATTCATCATTTAATGGA
AATAGAACACAAGAAAGGAGAAATTCCAGAAAATTCCGCTATAATTGTGT
ACACTG

Coding sequence (CDS) from alignment at scaffold_451:1077991..1078946-

>TCONS_00066255 ID=TCONS_00066255|Name=TCONS_00066255|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_451:1077991..1078946- (Clytia hemisphaerica)
GTTATGTTTGGAGCGATGCGAACTTTCAATTAGAGATTCATCATTTAATG
GAAATAGAACACAAGAAAGGAGAAATTCCAGAAAATTCCGCTATAATTGT
GTACACTATGAAGAAGAAATTAATCCACATAGTCATCACATTCATAATAC
TACCCTCTCTCATCACAGCAATTCATTATGATAAAGTGGACCTCACTTTC
ATTTTCGATATGAGTGCAAATGGTACAGATCAATCTTTTGTTCTTGGTAC
CCACACAAAGGTATCTCAACAAGATGTGGAAATCCCTTTGGACCGGTTAA
TAGCATACCCGTATATTGTAGATGTGTCAGGTTATGTTTGGAGCGATGCG
AACTTTCAATTAGAGATTCATCATTTAATGGAAATAGAACACAAGAAAGG
AGAAATTCCAGAAAATTCCGCTATAATTGTGTACACTATGAAGAAGAAAT
TAATCCACATAGTCATCACATTCATAATACTACCCTCTCTCATCACAGCA
ATTCATTATGATAAAGTGGACCTCACTTTCATTTTCGATATGAGTGCAAA
TGGTACAGATCAATCTTTTGTTCTTGGTACCCACACAAAGGTATCTCAAC
AAGATGTGGAAATCCCTTTGGACCGGTTAATAGCATACCCGTATATTGTA
GATGTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041460XLOC_041460Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066255-proteinTCONS_00066255-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066255-exon-scaffold_451-1575043694:1078714..1078946TCONS_00066255-exon-scaffold_451-1575043694:1078714..1078946Clytia hemisphaericaexon
TCONS_00066255-exon-scaffold_451-1575043694:1077991..1078098TCONS_00066255-exon-scaffold_451-1575043694:1077991..1078098Clytia hemisphaericaexon
TCONS_00066255-exon-scaffold_451-1510915933:1078714..1078946TCONS_00066255-exon-scaffold_451-1510915933:1078714..1078946Clytia hemisphaericaexon
TCONS_00066255-exon-scaffold_451-1510915933:1077991..1078098TCONS_00066255-exon-scaffold_451-1510915933:1077991..1078098Clytia hemisphaericaexon
TCONS_00066255-exon-scaffold_451-1491911889:1078714..1078946TCONS_00066255-exon-scaffold_451-1491911889:1078714..1078946Clytia hemisphaericaexon
TCONS_00066255-exon-scaffold_451-1491911889:1077991..1078098TCONS_00066255-exon-scaffold_451-1491911889:1077991..1078098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1077991..1078946 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61261	0.262092	0.608628	0	0	0	0	0.64699	0.67946	0.28054	1.0892	0.178999	7.5075	5.56901	13.7354	9.49926	1.41235	1.65441	0.285708	1.49486	1.55917	1.90127	1.23266	2.24134	4.03992	3.86307	1.10561	0.786623	0.894938	0.607867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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