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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066245 ID=TCONS_00066245|Name=TCONS_00066245|organism=Clytia hemisphaerica|type=transcript|length=930bp
TGAATTACATAAATTTATGAAACATTTATTTACTCAACATTATATGAGAA
AGTTCTTTCTCTAGAGTGAAGGTTGAAAGAGCATAAGCATCAGTTTCTAG
AAGATTGTATCGTACACAGATAGAAATCAAAAACGAAAGAAGAATGAAGA
TGAACTTTGGAAGcatTGTCGTTCTCTTGCTGTTAGCCAGTACAATGATT
GACGCTAATTGCATCATTAGAGTTCGAAACGATAATGATTGTCGTATTGT
CTGTCAACTAATGACCAACTGTCGTGCGTTCACGTACATCAAGAGAAATA
GATACTGTTATCCTAAGAAACAAACGGGCTGGAACAAGAAAGCATACAAT
GGCGCAATTTCAGGAAGGTTGGATTTCCATTCCAATGAAAAAGACGTCGA
CTATTATGGAGGAGATCTTCCTGAACCTTGTTAAGAATCACCAAAACGAA
GGAGTGTGTCAAAGTCTTGTTAACATTTTATAGTGTGAGAAGGCTGAGTT
AGAGTTTAATTAGttagaaattttttatcttttcttcaggcaaaaaaggt
tatgaaaaaaaactgacgcttatttcgcgcgaaagtggagactaAGTAAA
AAAATCCTTGCAACGACTCCAGAGATTTGAATTGACGTCAATGGGCCATT
TCATTGTATATCTATACAGGGGTGTGGTAAATTTCAAGGAGGTAATCTGA
GAAGAATTTCCAAGGGGATCTTAAGaagtatattttcatttttccaagga
gGGTAAAAAGCTATTCTAAagttttcagggggtaaaatactgattttagt
tcgtccaccgtcaCGTTTAAGGTATGGTAAGAATTTTCCCAAGAGATTCT
TTacaaattttcctattttccagAGGGTGTCGACACATTTTCAAGAACCT
TTATTGACTTAAAAAGGATCGTCCATCCCC Run BLAST on NCBI transcript from alignment at scaffold_451:949120..951863- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066245 ID=TCONS_00066245|Name=TCONS_00066245|organism=Clytia hemisphaerica|type=transcript|length=2744bp|location=Sequence derived from alignment at scaffold_451:949120..951863- (Clytia hemisphaerica)
TGAATTACATAAATTTATGAAACATTTATTTACTCAACATTATATGAGAA
AGTTCTTTCTCTAGAGTGAAGGTTGAAAGAGCATAAGCATCAGTTTCTAG
AAGATTGTATCGTACACAGATAGAAATCAAAAACGAAAGAAGAATGAAGA
TGAACTTTGGAAGGTATGCATCGTGAATATTTTCTTCATAGAACTTTAAA
GGCTTGGGGGCACGAGAAGTTTTTTTCGCGTTAGTGCAATGCAACATGCT
CCATCCCACCAACACAAGAAAAAAGTGTGTCACATGGCATGGTTTCAAAT
CTATACATAGGATTCGTAGACGCCTTTGTAGAATATTGACAAACTAAATG
GAACTGATCTTGCCTGTTCTTCCTATAGAACCTGAACCTTTCATGTCAAA
AAAGTTCCGAAAACACTGAAAACACTTTGTCTGAAACACCTTTTCCGAAC
CTTTCATGCTTTTTTTGGGTGTTTTTGGCAAAAATCATTTCCCAGAAACA
CCTTACCTCTCGAGGTGGTGTGTTTTCAACATTTCCTGTGTTCCTGGGAT
TTCCATAAATCGACTTTCAATTTTCTCCATAAAATCCAAGCCAAAAATGC
ATTACCTGAAACACCGGCAAGTTTCTGAACCATTCAGTGTTTGTTCAAGG
TGTTTTTCAAGACGATTTTGAAGCTCTTGCAGTGTCCTGTCGGAACCAAT
CAGATAAAAATCGGGTTGAAACTCGGGTTAAAAAATCGGGAAAAAATCGG
GAAAATTAGCCAGTCGGGACTTTTTTAACAGTTGGCTTCAACAGGACATT
CGGTGTTTTTAAAAACTTTGAAAACTGAACCATTCGTGTTCAAAAGTGTT
TTCTGCAAACCAGGTAAGCAATGTGTTTTTAAAGACATGAAAGGTTCAGG
CTCATAGTCTGTCTCAATAGAATCTGCAGTGAACAGAAAAAAGTGTAACC
AGGGTGTAACTTTTGATTGAATTTTATGGTTTTATGATCGTTGAAAAGAA
ATCTATAAGTGGAATATTATCAAAAAATAAAAAATCGCAGATAAGTTTTC
TCAAGGTTATTCTAAACCCTTACCTCATTAAATATTCATGTTTTTCATTT
TTCAGCATTGTCGTTCTCTTGCTGTTAGCCAGTACAATGATTGACGCTAA
TTGCATCATTAGAGTTCGAAACGATAATGATTGTCGTATTGTCTGTCAAC
TAATGACCAACTGTCGTGCGTTCACGTACATCAAGAGAAATAGATACTGT
TATCCTAAGGTAGGTTGACACCATTGACTTACAAGCTCGAAGGGCTAGAC
TCGAGACTCCTGGATGGGAAATGAAATCACTTATTTCCCATCCAAAACGC
CCGCGCGTGGTTTTTACACAAACGCCAGATTGAAACTAAATCCTATCGCT
AGATTTCAAAAAAGGCATTCATCAAAAACAAAGGAGCCGCTAGATAAAAT
CCGTCGTCATGATTACGGCGTGTTCTAGGCGTGTTCTAGATGGGAAATAA
GTGGCTTCACTTTTTGTTGCCTGGGAAAGGTTAGAAATTCTACTCTAGCT
CTTTGGGCTTTAAACTTTTTTCAGCCAGTGGGGGTAAAATGTTGAACTGT
AACTCGATAATTCCCATCTTTTTCTTGTTGCTGGGAATTTCAATTCTATT
GTTTTACGAGGATCCCCCTTATTGGGGACTTAGGTTGTGGTCATTCGTAA
CTTCTCCTTAATTCTTAACAATAGAATTACCAAGCTGGCACACAACGTTA
AACTAGCGATATATGGACGTGAACATTAGATAAACGTTGAAAAAAGTGTG
AGCTGGGGAATTGGGCTTTTCCAGAAATAATTTGAATATGGGGGGTGGAG
GATATAACATTTTTTGGAAATTTATCCCCCGGACATTGTGACTTTTGACC
CCTGGACAGCAGGTCTAACCTCCCGGACAAGCATTAGTTGACCCCCTGGA
CACTCAAAATTACCCCCAAACAGAGGAGGCTTACCCCCGGACAAGGTAAA
TTTTGTAGATTTTTCACTACCCCCCCCCGGACACTATATCCTCCACCCCC
ATGTACGAACATTTTCTGGAAGAGCCAATTATTAGTATTTCAATGTATGA
CTAAAATATATCTTTTCGTTTGTTACCATAGAAACAAACGGGCTGGAACA
AGAAAGCATACAATGGCGCAATTTCAGGAAGGTTGGATTTCCATTCCAAT
GAAAAAGACGTCGACTATTATGGAGGAGATCTTCCTGAACCTTGTTAAGA
ATCACCAAAACGAAGGAGTGTGTCAAAGTCTTGTTAACATTTTATAGTGT
GAGAAGGCTGAGTTAGAGTTTAATTAGTTAGAAATTTTTTATCTTTTCTT
CAGGCAAAAAAGGTTATGAAAAAAAACTGACGCTTATTTCGCGCGAAAGT
GGAGACTAAGTAAAAAAATCCTTGCAACGACTCCAGAGATTTGAATTGAC
GTCAATGGGCCATTTCATTGTATATCTATACAGGGGTGTGGTAAATTTCA
AGGAGGTAATCTGAGAAGAATTTCCAAGGGGATCTTAAGAAGTATATTTT
CATTTTTCCAAGGAGGGTAAAAAGCTATTCTAAAGTTTTCAGGGGGTAAA
ATACTGATTTTAGTTCGTCCACCGTCACGTTTAAGGTATGGTAAGAATTT
TCCCAAGAGATTCTTTACAAATTTTCCTATTTTCCAGAGGGTGTCGACAC
ATTTTCAAGAACCTTTATTGACTTAAAAAGGATCGTCCATCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066245-exon-scaffold_451-1575043694:951701..951863 | TCONS_00066245-exon-scaffold_451-1575043694:951701..951863 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1575043694:950605..950758 | TCONS_00066245-exon-scaffold_451-1575043694:950605..950758 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1575043694:949120..949732 | TCONS_00066245-exon-scaffold_451-1575043694:949120..949732 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1510915933:951701..951863 | TCONS_00066245-exon-scaffold_451-1510915933:951701..951863 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1510915933:950605..950758 | TCONS_00066245-exon-scaffold_451-1510915933:950605..950758 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1510915933:949120..949732 | TCONS_00066245-exon-scaffold_451-1510915933:949120..949732 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1491911889:951701..951863 | TCONS_00066245-exon-scaffold_451-1491911889:951701..951863 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1491911889:950605..950758 | TCONS_00066245-exon-scaffold_451-1491911889:950605..950758 | Clytia hemisphaerica | exon |
| TCONS_00066245-exon-scaffold_451-1491911889:949120..949732 | TCONS_00066245-exon-scaffold_451-1491911889:949120..949732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:949120..951863 - |
Blast
The following BLAST results are available for this feature:
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