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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066238 ID=TCONS_00066238|Name=TCONS_00066238|organism=Clytia hemisphaerica|type=transcript|length=3984bpRun BLAST on NCBI transcript from alignment at scaffold_451:742305..779482- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066238 ID=TCONS_00066238|Name=TCONS_00066238|organism=Clytia hemisphaerica|type=transcript|length=37178bp|location=Sequence derived from alignment at scaffold_451:742305..779482- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066238 vs. Swiss-Prot (Human)
Match: KAP2 (cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Homo sapiens GN=PRKAR2A PE=1 SV=2) HSP 1 Score: 366.696 bits (940), Expect = 4.214e-114 Identity = 180/311 (57.88%), Postives = 223/311 (71.70%), Query Frame = 2
Query: 362 PPKNRYARRQSVCAEAYNPDESDDEDEKLVVHPKSDVQRKRLNEAVGNILLFKNLDNEQLNNVLDAMFERKTTADEHIIDQGDDGDNFYVIDRGIFDIYVKIDGSDKKVGAYNNKGSFGELALMYNTPRAATIVSNDEGIIWALDRVTFRRIVLKAAYLRRKMHEALLEKVPMLKHLNEFERMNVADALESRQYNDDVTIIRQGEEGSSMFFIEKGEVSVKI-------QDDSGREVEVTTLREGQYFGELALVTHKPRAASVYSKGDCKVAALDILAFERLLGSCMEVMKRSIGDYEEQLKKLGLSNRDL 1273
P +R+ RR SVCAE YNPDE +++ + V+HPK+D QR RL EA +ILLFKNLD EQL+ VLDAMFER ADEH+IDQGDDGDNFYVI+RG +DI V D + VG Y+N+GSFGELALMYNTPRAATIV+ EG +W LDRVTFRRI++K +RKM E+ +E VP+LK L ERM + D + + Y D II QGE+ S + IE GEVS+ I +D +EVE+ +GQYFGELALVT+KPRAAS Y+ GD K +D+ AFERLLG CM++MKR+I YEEQL K+ S+ DL
Sbjct: 89 PVPSRFNRRVSVCAETYNPDEEEEDTDPRVIHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFERIVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLLKSLEVSERMKIVDVIGEKIYKDGERIITQGEKADSFYIIESGEVSILIRSRTKSNKDGGNQEVEIARCHKGQYFGELALVTNKPRAASAYAVGDVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQLVKMFGSSVDL 399 The following BLAST results are available for this feature:
BLAST of TCONS_00066238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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