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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066231 ID=TCONS_00066231|Name=TCONS_00066231|organism=Clytia hemisphaerica|type=transcript|length=1921bp
taattcgaactaaaatattggtccaaAGGGGCTTAGAAAGTGGCTTAAAT
AAATTACTctttacaaaataaaatttttggacccgtgaagatcgaattag
agagagtcaattgAGTCTCCGAATAACAgataaaaactaaaacaaacACT
ACACAATTATTTCAAACGAAAAACAAGTCAAGGTATAGATAGATCAAGTG
gaattaaaagtttatatctTATATACAGAAGTAGATTCAACATAAAGGTT
AAATCATAAAACTTTCAAGTTGCCACGTATAAAAATGAGCAGTTTTATAT
TTTGATGCTCTGAGGAAGCGGTGATAGAAAAAACCATACCAAAGAACTAC
ATAATGTGAAAGTTATTGGACCCTCCccgttgaggaggtccatttccgtt
ccaagggggtaaggtttgaaatgcagtggaattccataagggtaggcgaa
aatccgtcaaaaagaAGGGGAAATTCCAAAGCGGATagtgattgaaaatt
tgtaaaaattcggaattccagaggggtatgatcctaaaattgcctggaat
tccaagggggtaggtcacaaaaggttggagctcctcaacagggggtgtac
ggtttttttctggaaaagcccattgaagGAAACCAGcattaaaacttaaa
acttaGAAGAACGTTGGGCAGTGGCGGTGGCGGTGGCGCCCTAACAACAA
AACAATCGGAAGGGCGGGTCATCGACAGAGACTGGGTATTAAAAACATTA
CTGAATATAATAACATACATCATTAAACTACGTCACTTAATTACATACAA
TAAATTATtaatttcttaaaatgttcttataaaaaacaacgatATCTTGA
AaggtaaaagtttaaaaagaaaacaaagggACAAACTAGacatagatctt
atcggagtttttaattattctaaaaacgccatgcattgtgggattgcttc
gggggtattacaatagaaatctcttaggaattccNGATTTTTCTAAAAAC
Gccatgcattgtgggattgcttcgggggtattacaatagaaatctcttag
gaattcctggagggaattctattgttatacccccgaaacaatccaacaat
gcatcgctgttttagaaaaacaaaaactccgataaggtttATTGAAAACG
AGTTGGCAGGTCAAATCAAGATCCATAATTCGCGAGTTATATTTTGTGAT
TTATGCGTTGTTACGTCATTCCGAATTTGGAATAACATCACTCCCAAAGA
ATAAATCTGTGAATAACTCGTCATGTTATTTCTAAGAATATTTCTCAGTG
TTGATATTCTTAGTAATAAGATGAGTTAGCATGCTTATGATGTGAAAAGT
ATTGAAAACGTCCAAAAATCAATTAAACTCAATTAAACGATGGAAGCTTT
CGACTCTTGACACGACTAGAGCATAGTCTAGGTATTTCGCTGAAAAGTTC
AATTACAACTTTACGTTTGGGTATTACCACTGActtttatataccctgga
ccaagtttctcattcccagtcaagcaaaatctttgatatatagatctact
ttccctcgaaaacttttgataatatagcgccgttagacgttaattcttaa
tggcttctttacgggtaccaattcaaaaaaacttcgatcaaagaagGCGg
gtatagcttggtccagggatatataaaggtcagtgggtatTGCACATGAC
GAAAACGATCTAAATAGAAAGACGAACGTTTCACAAATGTTCATTACCAT
CATCTTACATACCGGGTACCAGTTTTGTCCAATTTCAACAATTTCCCTAA
CCGTTGCTTCGTGGTTGAGGTTTTAGGCTTCTTTTTTATTGGTGCTTTTG
AACTCGGCCCCAGTCCTCCAACAAGGTTTGATTTGACGCTTTTCTGTCTC
CCATCTAAAAGAGATTGAGGA Run BLAST on NCBI transcript from alignment at scaffold_451:517848..519842- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066231 ID=TCONS_00066231|Name=TCONS_00066231|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at scaffold_451:517848..519842- (Clytia hemisphaerica)
TAATTCGAACTAAAATATTGGTCCAAAGGGGCTTAGAAAGTGGCTTAAAT
AAATTACTCTTTACAAAATAAAATTTTTGGACCCGTGAAGATCGAATTAG
AGAGAGTCAATTGAGTCTCCGAATAACAGATAAAAACTAAAACAAACACT
ACACAATTATTTCAAACGAAAAACAAGTCAAGGTATAGATAGATCAAGTG
GAATTAAAAGTTTATATCTTATATACAGAAGTAGATTCAACATAAAGGTT
AAATCATAAAACTTTCAAGTTGCCACGTATAAAAATGAGCAGTTTTATAT
TTTGATGCTCTGAGGAAGCGGTGATAGAAAAAACCATACCAAAGAACTAC
ATAATGTGAAAGTTATTGGACCCTCCCCGTTGAGGAGGTCCATTTCCGTT
CCAAGGGGGTAAGGTTTGAAATGCAGTGGAATTCCATAAGGGTAGGCGAA
AATCCGTCAAAAAGAAGGGGAAATTCCAAAGCGGATAGTGATTGAAAATT
TGTAAAAATTCGGAATTCCAGAGGGGTATGATCCTAAAATTGCCTGGAAT
TCCAAGGGGGTAGGTCACAAAAGGTTGGAGCTCCTCAACAGGGGGTGTAC
GGTTTTTTTCTGGAAAAGCCCATTGAAGGAAACCAGCATTAAAACTTAAA
ACTTAGAAGAACGTTGGGCAGTGGCGGTGGCGGTGGCGCCCTAACAACAA
AACAATCGGAAGGGCGGGTCATCGACAGAGACTGGGTATTAAAAACATTA
CTGAATATAATAACATACATCATTAAACTACGTCACTTAATTACATACAA
TAAATTATTAATTTCTTAAAATGTTCTTATAAAAAACAACGATATCTTGA
AAGGTAAAAGTTTAAAAAGAAAACAAAGGGACAAACTAGACATAGATCTT
ATCGGAGTTTTTAATTATTCTAAAAACGCCATGCATTGTGGGATTGCTTC
GGGGGTATTACAATAGAAATCTCTTAGGAATTCCNGATTTTTCTAAAAAC
GCCATGCATTGTGGGATTGCTTCGGGGGTATTACAATAGAAATCTCTTAG
GAATTCCTGGAGGGAATTCTATTGTTATACCCCCGAAACAATCCAACAAT
GCATCGCTGTTTTAGAAAAACAAAAACTCCGATAAGGTTTATTGAAAACG
AGTTGGCAGGTCAAATCAAGATCCATAATTCGCGAGTTATATTTTGTGAT
TTATGCGTTGTTACGTCATTCCGAATTTGGAATAACATCACTCCCAAAGA
ATAAATCTGTGAATAACTCGTCATGTTATTTCTAAGAATATTTCTCAGTG
TTGATATTCTTAGTAATAAGATGAGTTAGCATGCTTATGATGTGAAAAGT
ATTGAAAACGTCCAAAAATCAATTAAACTCAATTAAACGATGGAAGCTTT
CGACTCTTGACACGACTAGAGCATAGTCTAGGTATTTCGCTGAAAAGTTC
AATTACAACTTTACGTTTGGGTATTACCACTGACTTTTATATACCCTGGA
CCAAGTTTCTCATTCCCAGTCAAGCAAAATCTTTGATATATAGATCTACT
TTCCCTCGAAAACTTTTGATAATATAGCGCCGTTAGACGTTAATTCTTAA
TGGCTTCTTTACGGGTACCAATTCAAAAAAACTTCGATCAAAGAAGGCGG
GTATAGCTTGGTCCAGGGATATATAAAGGTCAGTGGGTATTGCACATGAC
GAAAACGATCTAAATAGAAAGACGAACGTTTCACAAATGTTCATTACCAT
CATCTTACATACCGGGTACCAGTTTTGTCCAATTTCAACAATTTCCCTAA
CCGTTGCTTCGTGGTTGAGGTTTTAGGCTTCTTTTTTATTGGTGCTTTTG
AACTCGGCCCTAGTCCTCCAACAAGNGTTGCTTCGTGGTTGAGGTTTTAG
GCTTCTTTTTTATTGGTGCTTTTGAACTCGGCCCCAGTCCTCCAACAAGG
TTTGATTTGACGCTTTTCTGTCTCCCATCTAAAAGAGATTGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066231-exon-scaffold_451-1575043694:518017..519842 | TCONS_00066231-exon-scaffold_451-1575043694:518017..519842 | Clytia hemisphaerica | exon |
| TCONS_00066231-exon-scaffold_451-1575043694:517848..517942 | TCONS_00066231-exon-scaffold_451-1575043694:517848..517942 | Clytia hemisphaerica | exon |
| TCONS_00066231-exon-scaffold_451-1510915933:518017..519842 | TCONS_00066231-exon-scaffold_451-1510915933:518017..519842 | Clytia hemisphaerica | exon |
| TCONS_00066231-exon-scaffold_451-1510915933:517848..517942 | TCONS_00066231-exon-scaffold_451-1510915933:517848..517942 | Clytia hemisphaerica | exon |
| TCONS_00066231-exon-scaffold_451-1491911889:518017..519842 | TCONS_00066231-exon-scaffold_451-1491911889:518017..519842 | Clytia hemisphaerica | exon |
| TCONS_00066231-exon-scaffold_451-1491911889:517848..517942 | TCONS_00066231-exon-scaffold_451-1491911889:517848..517942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:517848..519842 - |
Blast
The following BLAST results are available for this feature:
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