TCONS_00066224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066224
Unique NameTCONS_00066224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066224 ID=TCONS_00066224|Name=TCONS_00066224|organism=Clytia hemisphaerica|type=transcript|length=745bp
GGATTCTTTATATTCTCGGATTAGATAGATACAGCTCAGAATACATTGTT
AGCAGAAAAATTGCCATTTTGAAGTCTAATTCCAATTAATTTTTGCTCGT
ACTTACTCAGTTAACCGATAAAtgtaaaattttgtaatttttaaaaggTT
GTGATAGGAAAATCTATCAGATTAGACTCCGCGAAAAAAACTAGAATCTA
AGCCATCGAATTCTTAGCAACTATTACTTCCGACGACTTGCTTGTAAATC
TGACCATCAATGACCATCAGAATTCGCCGTTTGCCAGGCCTAAATAAGAC
CTCTGAATCAATCTTTTCTTTATTTGTAGgcataaaaagcaaaaaataaa
ctGCATCAAAAGCAACACGACAACGTTGAAGAACTATGTATCATTATCAA
ATCggcttttttatcattttgtttctTCCGGCTCTCACTGCACCCGCATT
TACTGTTGTCCGGAACGATAAAGATTATTTGACCGGTGTCAATCCTGCAT
GTGGAAATTTCAATGCACTAGGTGATGTAGTGGATGGAAAAATTGTTTGT
CGTTGTGGGAACGGAGATGGTTTAGGAGCAGCTTTTCATTCCCTGCTAAA
TAACAAAACGCCGTATTGTAAATCAACAAAAGATTTAGGCTGTTACGTCA
CTATCAAAGACAAGAAAAGTGGTGCTGTGAACTCGTTTAAAGATTTCGAG
CTCGTTTACCCAAActctatttcaccaaaccaagTGCAATCGTAT
Run BLAST on NCBI

protein sequence of TCONS_00066224-protein

>TCONS_00066224-protein ID=TCONS_00066224-protein|Name=TCONS_00066224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MYHYQIGFFIILFLPALTAPAFTVVRNDKDYLTGVNPACGNFNALGDVVD
GKIVCRCGNGDGLGAAFHSLLNNKTPYCKSTKDLGCYVTIKDKKSGAVNS
FKDFELVYPNSISPNQVQSY
Run BLAST on NCBI

transcript from alignment at scaffold_451:305705..308638-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066224 ID=TCONS_00066224|Name=TCONS_00066224|organism=Clytia hemisphaerica|type=transcript|length=2934bp|location=Sequence derived from alignment at scaffold_451:305705..308638- (Clytia hemisphaerica)
GGATTCTTTATATTCTCGGATTAGATAGATACAGCTCAGAATACATTGTT
AGCAGAAAAATTGCCATTTTGAAGTCTAATTCCAATTAATTTTTGCTCGT
ACTTACTCAGTTAACCGATAAATGTAAAATTTTGTAATTTTTAAAAGGTT
GTGATAGGAAAATCTATCAGATTAGACTCCGCGAAAAAAACTAGAATCTA
AGCCATCGAATTCTTAGCAACTATTACTTCCGACGACTTGCTTGTAAATC
TGACCATCAATGACCATCAGAATTCGCCGTTTGCCAGGCCTAAATAAGAC
CTCTGAATCAATCTTTTCTTTATTTGTAGGCATAAAAAGCAAAAAATAAA
CTGCATCAAAAGCAACACGACAACGTTGAAGAACTATGTATCATTATCAA
ATCGGCTTTTTTATCATTTTGTTTCTTCCGGCTCTCACTGCACCCGCATT
TACTGTTGTCCGGAACGATAAAGATTATTTGACCGGTGTCAATCCTGCAT
GTGGAAATTTCAATGCACTAGGTGATGTAGTGGATGGAAAAATTGTTTGT
CGTTGTGGGAACGGAGATGGTTTAGGAGCAGCTTTTCATTCCCTGCTAAA
TAACAAAACGCCGTATTGTAAATCAACAAAAGATTTAGGTAAGAAATATG
AGTATGCAGATGTATGTGTTTTTATTAAGTATCTCTATTTCTTAAAGGTT
TTGGTTTTAGATGAGAGTGATATCGTTTGCTTACTCATCAATTTTGATTC
GCAACCTTTTTCACATTGAACTGACACAGATGTGGAGCAAGATTTGTCGA
AAAGAGGAAAAGAAAAACATTTATTTTTGCTTATATCAGCATAATATAAC
AATAGGCAGAATATGAAACGGGAACACTTATGTAAAAATAAAATCTTTAA
GTGTCTATCCATTTCCGGTTAAGTATTTGTGAGTGTCACTGCTTGATTGA
TTGACAGGTTTCGAACGATGTGTAGTGGTTTTCGAGCGGGATTAGGGGCC
GTATTTGTTATTTGTGGAAATATTTGAAATTCAAGAACTCTACGATAAAT
TATACACTTTGAGTATAACATTTGGGTTTGAGGTTAGCTTTTTTTCACTT
TTAAATACGAAAAGGCTTTTTTCTCTCTTGAGGGTCTTTTCCNGTAACAT
TTGGGTTTGAGGTTACCTTTTTTCACCTAAATACAAAAAAGCTTTTTTCT
TTATTGATGTTTTATTCCGATGGTGTATTTTCCGTCTCCCACGCTAAATT
TTTACTAATTTGGGACAAAATTCTATCTTCAGACCCTTTATTGTTAAAAA
AGTTCTTCCTTGAGTTGAGACACAAAACGATTACTTATTGATACATTTTC
CTCTATATAGAAGGTCTGTGTAGAACCCTCTGAAATGATATTTTTTTGAT
AAGTTTGTTTATAGTAATCTAATACTATGAACTTGAAATTTCTTTGGATG
ATGAAGTGTCCAAGTCATTTTGATTAAGTGGAAATGTGATGAAAATTTAT
CTTAAAACTTTGACATAAACAATTGAACGCTGTTTTTTTAAGAGCAATAA
CGATTGTTCTTGAAATTCTAATGTTCCAAACAATAGAGCTCTTGTTCTAC
GGGCTTAACCTTTCCATCCCGCTGTTTTTTATATTTTTACGCTTTTATAT
TTTTTTTTGACAAAATGGACATGTTCGGTTATTTTCTAAAGAACTAGAAA
TTAGCTATCCCTGAAAAGCTAATTAAATTCTGCAGCTTTTAGGTTGGGTA
CCAATCCAAATAAAATACTCTAACTAAAATGACAGCTCCACATTTACCAA
AGTTTTTTTCCTCGTTTTTCGGTTATGTCAGTTTTTTGGTATTTTTCATC
TCCTATGCAAAAGTATGGGGAAGTTTAATTATTAAATTTTTCTTTAGTAT
TTTATCATTATATATTTACTCCTGGAGCCATATACCAAAATTAAGCATCC
AAAAAACATTTTACTGCTCACAACATCAGTCACTTTTCTCAGAAATCAGT
GTTTTTCCGTCCGTCATTTTGAATCAGTGTTTTTCTTCGAAAAGTGCTGA
CACACCACGTGATCATAACATTACATCATTATATATCAACAAAAAGCTTA
GACTCTCTACTTTCTTTTTCTTCTTTTTTGAACGATTACCAAGCAAGCCA
ATAAAAGATATGGCTTGAGAAAGACGTGTCTTACAGATTGCGTAAATGTA
CGGCATTCGGGGTGGAAAGGTTAAATCGGAGTCTGGTATTCTTATGAAAC
TGTTCTCATAAATAAAAAAGTGTGTATCTAGATTTGGAGAATGACTGGAA
ATACGAAGGGCCTAGTAGTGATTTAAAACGAGTTTTTAATTACAGTTGTA
AATCAAAATTTAGCGATAACGAATCATCTTCAATTGTAGCCTTCCTAACT
TTGCTTCAACTGAAATATTATTGGTAACCCAGTTGGCACACAACGTTGTT
TCAACGTTTATCTAACGTTCACAACGTCCATATAAAGTTAGATGAACGTT
GAAACAACGTTGTGTGCCAGCTGGGTATGCTAGGATCTTTAGAAAGGTCT
TCTAAGGTCTTTACTTTAAAGGAACATTAAAGTAGTAAAATGTAAACATT
GCGCGAACCACGTGTCATTAAAGAGAACAATTAAAATCACGTGTCCAAAA
CAAACCTTTAAAAACAATTAAACAATCATAAATTAGCCATATTTGGTTTG
ATTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCGCTGCATA
CAGTTTGTTTACAAATTTCGCAAGTACTGTAACGCCCTTCTAAAAGGATA
TTTGATTGATTCTATTTTTAATTCCAGGCTGTTACGTCACTATCAAAGAC
AAGAAAAGTGGTGCTGTGAACTCGTTTAAAGATTTCGAGCTCGTTTACCC
AAACTCTATTTCACCAAACCAAGTGCAATCGTAT

Coding sequence (CDS) from alignment at scaffold_451:305705..308638-

>TCONS_00066224 ID=TCONS_00066224|Name=TCONS_00066224|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_451:305705..308638- (Clytia hemisphaerica)
GCTGTTACGTCACTATCAAAGACAAGAAAAGTGGTGCTGTGAACTCGTTT
AAAGATTTCGAGCTCGTTTACCCAAACTCTATTTCACCAAACCAAGTGCA
ATCGTATATGTATCATTATCAAATCGGCTTTTTTATCATTTTGTTTCTTC
CGGCTCTCACTGCACCCGCATTTACTGTTGTCCGGAACGATAAAGATTAT
TTGACCGGTGTCAATCCTGCATGTGGAAATTTCAATGCACTAGGTGATGT
AGTGGATGGAAAAATTGTTTGTCGTTGTGGGAACGGAGATGGTTTAGGAG
CAGCTTTTCATTCCCTGCTAAATAACAAAACGCCGTATTGTAAATCAACA
AAAGATTTAGGCTGTTACGTCACTATCAAAGACAAGAAAAGTGGTGCTGT
GAACTCGTTTAAAGATTTCGAGCTCGTTTACCCAAACTCTATTTCACCAA
ACCAAGTGCAATCGTATATGTATCATTATCAAATCGGCTTTTTTATCATT
TTGTTTCTTCCGGCTCTCACTGCACCCGCATTTACTGTTGTCCGGAACGA
TAAAGATTATTTGACCGGTGTCAATCCTGCATGTGGAAATTTCAATGCAC
TAGGTGATGTAGTGGATGGAAAAATTGTTTGTCGTTGTGGGAACGGAGAT
GGTTTAGGAGCAGCTTTTCATTCCCTGCTAAATAACAAAACGCCGTATTG
TAAATCAACAAAAGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041444XLOC_041444Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066224-proteinTCONS_00066224-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066224-exon-scaffold_451-1575043694:308001..308638TCONS_00066224-exon-scaffold_451-1575043694:308001..308638Clytia hemisphaericaexon
TCONS_00066224-exon-scaffold_451-1575043694:305705..305811TCONS_00066224-exon-scaffold_451-1575043694:305705..305811Clytia hemisphaericaexon
TCONS_00066224-exon-scaffold_451-1510915933:308001..308638TCONS_00066224-exon-scaffold_451-1510915933:308001..308638Clytia hemisphaericaexon
TCONS_00066224-exon-scaffold_451-1510915933:305705..305811TCONS_00066224-exon-scaffold_451-1510915933:305705..305811Clytia hemisphaericaexon
TCONS_00066224-exon-scaffold_451-1491911889:308001..308638TCONS_00066224-exon-scaffold_451-1491911889:308001..308638Clytia hemisphaericaexon
TCONS_00066224-exon-scaffold_451-1491911889:305705..305811TCONS_00066224-exon-scaffold_451-1491911889:305705..305811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:305705..308638 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.07113	0.98749	2.55292	1.99168	1.11554	1.38177	0.80471	0.837559	2.28908	1.73721	1.12754	0.806684	1.93785	0.713007	3.94023	2.87149	1.21593	0.936451	0.37946	0.482978	0.639586	1.52217	0.181519	0.0968609	0.734655	0.374249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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