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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066204 ID=TCONS_00066204|Name=TCONS_00066204|organism=Clytia hemisphaerica|type=transcript|length=835bp
ATACTACTGTATGATCATTTTGTGAGCTTGAAAAGTGAACAAAACAAGAA
CAATAAACAAGGATAAAGGAAAGATAATGGATTTGTTTGAAGACTTGGAT
GAAAACCGATGGGAAAATAAAGGCCACCCACCTCTCGATCCTTCCAGCAT
TGAGGGTTACACATCATATATCGTATTTCAACGGCAAATTGTAGAAGACG
CAAAAACTATGATATTATATTTGAAGACAGAACAAGGAAGACCGTTGCAA
GTCAAACTTTCCAATTTCAAACCGGACAGAAATCCAATGAAAAGTGTCCG
AAATTGTTGTTTAAAAATAcgtaaaaatgaaattgttggtATCATGATGG
ACAGAGATTGGGTGGAAGCAAAATGAAGGACTGAATAGTAGTTGAATGAA
TACGACTTACTGGACGAGTGATTACGACTGAATTGATATTCAACTTTCTT
TGTATATATGTTTTTTCTATATTTAATTCcgtgaaagaaaatgaagaatt
tctATATTTGAGCGATGGCACGACTCACCattagacacccctgtctcaca
gccccggtggaacttttttttctcagtgggaGCAAAAACTTCCTATTGAA
ATTCCTTTtctcaaaggttaaaaaattcagtgcaatttttaaacatagaA
TTTCGAATGCAGTTGAAAttctaaggtattttcccaccggagaTGAAATC
TTTGTCGATATTTCCAGTGGAGCTGGgctcccagtgggtctgtgacagaG
GGATATAATTAGAAACAACAATCGGACCCGGTGGAACAACcgttaaagtg
gggaggctgaaggctcaaaatgacaTAAAAATTGC Run BLAST on NCBI protein sequence of TCONS_00066204-protein >TCONS_00066204-protein ID=TCONS_00066204-protein|Name=TCONS_00066204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MDLFEDLDENRWENKGHPPLDPSSIEGYTSYIVFQRQIVEDAKTMILYLK
TEQGRPLQVKLSNFKPDRNPMKSVRNCCLKIRKNEIVGIMMDRDWVEAK Run BLAST on NCBI transcript from alignment at scaffold_451:1378175..1380866+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066204 ID=TCONS_00066204|Name=TCONS_00066204|organism=Clytia hemisphaerica|type=transcript|length=2692bp|location=Sequence derived from alignment at scaffold_451:1378175..1380866+ (Clytia hemisphaerica)
ATACTACTGTATGATCATTTTGTGAGCTGTAAgttatttaagcaaaaaaa
ggtttcttgttgaaaacaaatttttcgttTCAANTCAGAATttgttaaaa
tgaaattttgatggtgcatacttattgaaaatttcagtttttaaattttg
ttttaaacaatgaacattttgaaaaatttcctaaaaaagaatttcaaata
aaaaatattttggagatAATCAAGTAATGTGTTTTCATATTTGCTAATGT
TTGCAGAACTGGTTCATTCACACACACGCACACGGGAAAAGTTTTATGAT
GTCAACGACCATAATACTACTGTATGATCATTTTGTGAGCTGTAAgttat
ttaagcaaaaaaaggtttcttgttgaaaacaaatttttcgttTCAAATAT
TGAGCATTTCTTACTTGGTTGCGACTTGCTTGATAGCTGTTTGAAGGATT
CAGTTAGCTTGGAAGGTTCGCTTATTTTTGAGCCCCTTCCCAGCAGTTTG
TGCGATAGCTTGATCAGGaatttgattctaaaaaagattttaggcGTAAT
GCACGAATTTTGGGTGTTTTCATGTGTGTGATTTTGTCGATTTTCATTTG
ATCGTGATCAAAGAAAGAGAGAGATAGAAACTCGATGCGATAGCTTGACT
AGAAGGTAGCCTCTGCCGGAGGGGAGGACTCCTTTAGTTTCGAGtcctcg
ggtaagttatggcatgtctcaaaaacctgaaaattaccataatttttgaa
ggccattagctggcagaaaatggggaaaccaatgatttgctacgaagggt
atcatgatgaagtttcgctttaggggtgttacctaattgtttacgccctt
attttcgcgaaaaaccgcaaaaactaaaaaatgatgacgtcagcaaaact
tgtttttcaaataactccagtttggctaaagatagaagcatgaaatttgg
actgaagttgcatatcattaaaaggatcattttgcaaaaaagtttttttg
aaattttgctgacatcagcactttattgcaaaatttcgtattttgttgat
ttctgctgacgaaagcaaaatttcgaaaaaaaaaattttgcaaaatgatt
cttttaatgatattcaacgttggtccaaatttcatgtttctaccaTTATC
CAAACTGGAGATATTCAAGAAACAAGTTTTGCTAACGTCAGCACTGAGTC
GTTACGCAAATTGCCTGACGGGTCCGTGCAGTGGTTAAAAGTATGTTTTC
AAGATAGCagaaatacactgtaagggtgaaaattttagaaaatcaagaaa
atttctaatttttgctcgaaaactTCGATTTTTTAGCACtgagaaagttg
aaaatttaagaaaaaatttactGTACCGATTACTGTACTGATGGTGCGAT
TCTAAAAAGCCGCGCATATCTTCAGTCTAAAGCAATTACAATTTTGACTC
GTGTTTCTTATGTAGTGAAAAGTGAACAAAACAAGAACAATAAACAAGGA
TAAAGGAAAGATAATGGATTTGTTTGAAGACTTGGATGAAAACCGATGGG
AAAATAAAGGCCACCCACCTCTCGATCCTTCCAGCATTGGTAAGATTTTC
CATTCAAAATCATGattattaaaaagtgaaatggaCTATTTAAGAACCCA
TAACCCCTGTCAGAGCTCTTTTATCTACTTCCCAAAGCGAAATAGACTAT
TTAAGAGCCAATGACCCCTTGTTAGACATTGGTAAGCTACTTAATCTCTT
ATAATTGTTATTTGGTCATTGAAAAGCTTAAAGGGTTCACTCGAAAGTGA
AATAGAAAATATAAGAGCAAATGACCCCTTGTTAAACATTAGTAAGCTTT
TTAATCTCTTTTAAAGCGTCATTTGGTTATTGAAAAAGTTGAGGGGTTCG
ATTTTTGTGGACACACTGTGTATGCAGCATAAGCTTAAAAATATTCTGAA
ATAGAACCTCTCTCTCCTCTCTCACTGACCCTTTATAAACACTATGTATC
TCTTTTCAGAGGGTTACACATCATATATCGTATTTCAACGGCAAATTGTA
GAAGACGCAAAAACTATGATATTATATTTGAAGACAGAACAAGGAAGACC
GTTGCAAGTCAAACTTTCCAATTTCAAACCGGACAGAAATCCAATGAAAA
GTGTCCGAAATTGTTGTTTAAAAATAcgtaaaaatgaaattgttggtATC
ATGATGGACAGAGATTGGGTGGAAGCAAAATGAAGGACTGAATAGTAGTT
GAATGAATACGACTTACTGGACGAGTGATTACGACTGAATTGATATTCAA
CTTTCTTTGTATATATGTTTTTTCTATATTTAATTCcgtgaaagaaaatg
aagaatttctATATTTGAGCGATGGCACGACTCACCattagacacccctg
tctcacagccccggtggaacttttttttctcagtgggaGCAAAAACTTCC
TATTGAAATTCCTTTtctcaaaggttaaaaaattcagtgcaatttttaaa
catagaATTTCGAATGCAGTTGAAAttctaaggtattttcccaccggaga
TGAAATCTTTGTCGATATTTCCAGTGGAGCTGGgctcccagtgggtctgt
gacagaGGGATATAATTAGAAACAACAATCGGACCCGGTGGAACAACcgt
taaagtggggaggctgaaggctcaaaatgacaTAAAAATTGC Coding sequence (CDS) from alignment at scaffold_451:1378175..1380866+ >TCONS_00066204 ID=TCONS_00066204|Name=TCONS_00066204|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_451:1378175..1380866+ (Clytia hemisphaerica)
ATGGATTTGTTTGAAGACTTGGATGAAAACCGATGGGAAAATAAAGGCCA
CCCACCTCTCGATCCTTCCAGCATTGAGGGTTACACATCATATATCGTAT
TTCAACGGCAAATTGTAGAAGACGCAAAAACTATGATATTATATTTGAAG
ACAGAACAAGGAAGACCGTTGCAAGTCAAACTTTCCAATTTCAAACCGGA
CAGAAATCCAATGAAAAGTGTCCGAAATTGTTGTTTAAAAATAcgtaaaa
atgaaattgttggtATCATGATGGACAGAGATTGGGTGGAAGCAAAATGA
ATGGATTTGTTTGAAGACTTGGATGAAAACCGATGGGAAAATAAAGGCCA
CCCACCTCTCGATCCTTCCAGCATTGAGGGTTACACATCATATATCGTAT
TTCAACGGCAAATTGTAGAAGACGCAAAAACTATGATATTATATTTGAAG
ACAGAACAAGGAAGACCGTTGCAAGTCAAACTTTCCAATTTCAAACCGGA
CAGAAATCCAATGAAAAGTGTCCGAAATTGTTGTTTAAAAATAcgtaaaa
atgaaattgttggtATCATGATGGACAGAGATTGGGTGGAAGCAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066204-exon-scaffold_451-1491911889:1378175..1378202 | TCONS_00066204-exon-scaffold_451-1491911889:1378175..1378202 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1510915933:1378175..1378202 | TCONS_00066204-exon-scaffold_451-1510915933:1378175..1378202 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1575043694:1378175..1378202 | TCONS_00066204-exon-scaffold_451-1575043694:1378175..1378202 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1491911889:1379640..1379763 | TCONS_00066204-exon-scaffold_451-1491911889:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1510915933:1379640..1379763 | TCONS_00066204-exon-scaffold_451-1510915933:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1575043694:1379640..1379763 | TCONS_00066204-exon-scaffold_451-1575043694:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1491911889:1380184..1380866 | TCONS_00066204-exon-scaffold_451-1491911889:1380184..1380866 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1510915933:1380184..1380866 | TCONS_00066204-exon-scaffold_451-1510915933:1380184..1380866 | Clytia hemisphaerica | exon |
| TCONS_00066204-exon-scaffold_451-1575043694:1380184..1380866 | TCONS_00066204-exon-scaffold_451-1575043694:1380184..1380866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1378175..1380866 + |
Blast
The following BLAST results are available for this feature:
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