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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066163 ID=TCONS_00066163|Name=TCONS_00066163|organism=Clytia hemisphaerica|type=transcript|length=458bp
GTCGGAAACTATCCTCCATCAAAAGAAATTGTAGAAACACTTGTGTCTGT
TTGGGAGGTGtctcaaaagttattgattgtcgAAAGTCAGCGTGGGGCTG
TTGCAATGATAAGNCATATAGGATGGTGTCGGAAACTATCCTCCATCAAA
AGAAATTGTAGAAACACTTGTGTCTGTTTGGGAGGTGtctcaaaagttat
tgattgtcgAAAGTCAGCGTGGGGCTGTTGCAATGATAAGAAAACGAAGA
AACAAGATGCAATCGGTTTAAATTGTCcagATTGCGCGGATGATAGTCGA
TTCAAAGTTCTTTGTGATAGATTTGCAAAAGAATGTGCAGGGAGTGCGCC
AATCGTCAAATCGATGAGAAAGTATTGTCCAAAAACTTGCAATATTTGCG
TGAAAGACAAAACAGATGTTCCAGTGGAATCTATTGCACCTTAACTTCAG
TAAGAGGA Run BLAST on NCBI protein sequence of TCONS_00066163-protein >TCONS_00066163-protein ID=TCONS_00066163-protein|Name=TCONS_00066163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
VGNYPPSKEIVETLVSVWEVSQKLLIVESQRGAVAMIXHIGWCRKLSSIK
RNCRNTCVCLGGVSKVIDCRKSAWGCCNDKKTKKQDAIGLNCPDCADDSR
FKVLCDRFAKECAGSAPIVKSMRKYCPKTCNICVKDKTDVPVESIAP Run BLAST on NCBI transcript from alignment at scaffold_451:662547..663729+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066163 ID=TCONS_00066163|Name=TCONS_00066163|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_451:662547..663729+ (Clytia hemisphaerica)
GTCGGAAACTATCCTCCATCAAAAGAAATTGTAGAAACACTTGTGTCTGT
TTGGGAGGTGtctcaaaagttattgattgtcgAAAGTCAGCGTGGGGCTG
TTGCAATGATAAGNCATATAGGATGGTGTCGGAAACTATCCTCCATCAAA
AGAAATTGTAGAAACACTTGTGTCTGTTTGGGAGGTGtctcaaaagttat
tgattgtcgAAAGTCAGCGTGGGGCTGTTGCAATGATAAGAAAACGAAGA
AACAAGATGCAATCGGTTTAAATTGTCcaggtaccttatcggggaaaaaa
tatCCTGATATtcatcacccgaccaaaactttcccccgaccaaaacattt
acTATGTATTTTATACCCTAGCCGAAAATTCAAATtcacgtttttacgtc
ttttttAACGAAACTAGCCGTCGGCAATTTTATCGGGTTgcagtgactaa
attgtaaatttggtaCTACAAGCCacgaacttgaaattttggtcggggca
AAGTGAATCGTCTCCCCGTTAGCTTTTCCCTAACTAATTAAAACCTCAAC
TTTTCCCCTAAATATATTATTCAGTGTACCCAAGAGCCTGATTTTGTGGT
TGTTAAGAAGTATACGGTgattcaacgtccatctaatgttcacaacgtcc
atacaaCATTAAATGAATGTTTgagacaacgttgtgtgtcagctgagCAG
TAATAAAGTGCCCCTCCCGTTCATTGAAAATCTTTCAAGAGCCTCCACAG
CGAGGCTGTGTTTTATGCAACTGACGGTTAGTTTGATTTGTCTGAATCCT
GACTGGCTAAGTAAGGACGACATTAAATCGACACTTTTACTGTCTTCAAT
TTTGCAGGTCGTTTGTTTTTCCCAATCATTTCTGTCACTGGCCTTCCTCA
AAAGGACAGATACATAAACCTCACTATTAGGCAGCTCAGAATACCTGTAA
CTAGTTATAAAATAAGTGCACTGAGGTAATATTTTCTTACCTCTTTTTTA
TTCAGATTGCGCGGATGATAGTCGATTCAAAGTTCTTTGTGATAGATTTG
CAAAAGAATGTGCAGGGAGTGCGCCAATCGTCAAATCGATGAGAAAGTAT
TGTCCAAAAACTTGCAATATTTGCGTGAAAGACAAAACAGATGTTCCAGT
GGAATCTATTGCACCTTAACTTCAGTAAGAGGA Coding sequence (CDS) from alignment at scaffold_451:662547..663729+ >TCONS_00066163 ID=TCONS_00066163|Name=TCONS_00066163|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_451:662547..663729+ (Clytia hemisphaerica)
GTCGGAAACTATCCTCCATCAAAAGAAATTGTAGAAACACTTGTGTCTGT
TTGGGAGGTGtctcaaaagttattgattgtcgAAAGTCAGCGTGGGGCTG
TTGCAATGATAAGNCATATAGGATGGTGTCGGAAACTATCCTCCATCAAA
AGAAATTGTAGAAACACTTGTGTCTGTTTGGGAGGTGtctcaaaagttat
tgattgtcgAAAGTCAGCGTGGGGCTGTTGCAATGATAAGAAAACGAAGA
AACAAGATGCAATCGGTTTAAATTGTCcagATTGCGCGGATGATAGTCGA
TTCAAAGTTCTTTGTGATAGATTTGCAAAAGAATGTGCAGGGAGTGCGCC
AATCGTCAAATCGATGAGAAAGTATTGTCCAAAAACTTGCAATATTTGCG
TGAAAGACAAAACAGATGTTCCAGTGGAATCTATTGCACCTTAAGTCGGA
AACTATCCTCCATCAAAAGAAATTGTAGAAACACTTGTGTCTGTTTGGGA
GGTGtctcaaaagttattgattgtcgAAAGTCAGCGTGGGGCTGTTGCAA
TGATAAGNCATATAGGATGGTGTCGGAAACTATCCTCCATCAAAAGAAAT
TGTAGAAACACTTGTGTCTGTTTGGGAGGTGtctcaaaagttattgattg
tcgAAAGTCAGCGTGGGGCTGTTGCAATGATAAGAAAACGAAGAAACAAG
ATGCAATCGGTTTAAATTGTCcagATTGCGCGGATGATAGTCGATTCAAA
GTTCTTTGTGATAGATTTGCAAAAGAATGTGCAGGGAGTGCGCCAATCGT
CAAATCGATGAGAAAGTATTGTCCAAAAACTTGCAATATTTGCGTGAAAG
ACAAAACAGATGTTCCAGTGGAATCTATTGCACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066163-exon-scaffold_451-1491911889:662547..662826 | TCONS_00066163-exon-scaffold_451-1491911889:662547..662826 | Clytia hemisphaerica | exon |
| TCONS_00066163-exon-scaffold_451-1510915933:662547..662826 | TCONS_00066163-exon-scaffold_451-1510915933:662547..662826 | Clytia hemisphaerica | exon |
| TCONS_00066163-exon-scaffold_451-1575043694:662547..662826 | TCONS_00066163-exon-scaffold_451-1575043694:662547..662826 | Clytia hemisphaerica | exon |
| TCONS_00066163-exon-scaffold_451-1491911889:663552..663729 | TCONS_00066163-exon-scaffold_451-1491911889:663552..663729 | Clytia hemisphaerica | exon |
| TCONS_00066163-exon-scaffold_451-1510915933:663552..663729 | TCONS_00066163-exon-scaffold_451-1510915933:663552..663729 | Clytia hemisphaerica | exon |
| TCONS_00066163-exon-scaffold_451-1575043694:663552..663729 | TCONS_00066163-exon-scaffold_451-1575043694:663552..663729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:662547..663729 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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