TCONS_00066156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066156
Unique NameTCONS_00066156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066156 ID=TCONS_00066156|Name=TCONS_00066156|organism=Clytia hemisphaerica|type=transcript|length=2252bp
TATTATGAAGACGCCGATTTCGTGTATCCACGAGTTGACGTTGATAGCGA
ATTATACGGGGACGATTTCTCTTGGAACCCAAATAACCGAAAACCACCCA
AAAGGAAACGCACCCGCAAACCGTCAGGAGTGACACCTTCAGCTTCATCA
ACATCAGCAACAACGATGACAACGATAAAGAAACTAAAAGAAGATGACTT
CGACCCTTTCTTTGCACCTGATGAAGATGTTAAAAAACCGGCTCAAAGAA
ATAGAAGCACTTCTTCGACCAGCGATGGGAGACAGAAAAGCGTCAAATCA
AACCTTGTTGGAGGACTGGGGCCGAGTTCAAAAGCACCAATAAAAAAGAA
GCCTAAAACCTCAACCACGAAGCAACNCTTGTTGGAGGACTAGGGCCGAG
TTCAAAAGCACCAATAAAAAAGAAGCCTAAAACCTCAACCACGAAGCAAC
GGTTAGGGAAATTGTTGAAATTGGACAAAACTGGTACCCGGTATGTAAGA
TGATGGTAATGAACATTTGTGAAACGTTCGTCTTTCTATTTAGATCGTTT
TCGTCATGTGCAatacccactgacctttatatatccctggaccaagctat
accCGCcttctttgatcgaagtttttttgaattggtacccgtaaagaagc
cattaagaattaacgtctaacggcgctatattatcaaaagttttcgaggg
aaagtagatctatatatcaaagattttgcttgactgggaatgagaaactt
ggtccagggtatataaaagTCAGTGGTAATACCCAAACGTAAAGTTGTAA
TTGAACTTTTCAGCGAAATACCTAGACTATGCTCTAGTCGTGTCAAGAGT
CGAAAGCTTCCATCGTTTAATTGAGTTTAATTGATTTTTGGACGTTTTCA
ATACTTTTCACATCATAAGCATGCTAACTCATCTTATTACTAAGAATATC
AACACTGAGAAATATTCTTAGAAATAACATGACGAGTTATTCACAGATTT
ATTCTTTGGGAGTGATGTTATTCCAAATTCGGAATGACGTAACAACGCAT
AAATCACAAAATATAACTCGCGAATTATGGATCTTGATTTGACCTGCCAA
CTCGTTTTCAATaaaccttatcggagtttttgtttttctaaaacagcgat
gcattgttggattgtttcgggggtataacaatagaattccctccaggaat
tcctaagagatttctattgtaatacccccgaagcaatcccacaatgcatg
gCGTTTTTAGAAAAATCNggaattcctaagagatttctattgtaataccc
ccgaagcaatcccacaatgcatggcgtttttagaataattaaaaactccg
ataagatctatgtCTAGTTTGTccctttgttttctttttaaacttttacc
tTTCAAGATatcgttgttttttataagaacattttaagaaattaATAATT
TATTGTATGTAATTAAGTGACGTAGTTTAATGATGTATGTTATTATATTC
AGTAATGTTTTTAATACCCAGTCTCTGTCGATGACCCGCCCTTCCGATTG
TTTTGTTGTTAGGGCGCCACCGCCACCGCCACTGCCCAACGTTCTTCtaa
gttttaagttttaatgCTGGTTTCcttcaatgggcttttccagaaaaaaa
ccgtacaccccctgttgaggagctccaaccttttgtgacctacccccttg
gaattccaggcaattttaggatcatacccctctggaattccgaattttta
caaattttcaatcactATCCGCTTTGGAATTTCCCCTtctttttgacgga
ttttcgcctacccttatggaattccactgcatttcaaaccttaccccctt
ggaacggaaatggacctcctcaacggGGAGGGTCCAATAACTTTCACATT
ATGTAGTTCTTTGGTATGGTTTTTTCTATCACCGCTTCCTCAGAGCATCA
AAATATAAAACTGCTCATTTTTATACGTGGCAACTTGAAAGTTTTATGAT
TTAACCTTTATGTTGAATCTACTTCTGTATATAagatataaacttttaat
tcCACTTGATCTATCTATACCTTGACTTGTTTTTCGTTTGAAATAATTGT
GTAGTgtttgttttagtttttatcTGTTATTCGGAGACTcaattgactct
ctctaattcgatcttcacgggtccaaaaattttattttgtaaagAGTAAT
TTATTTAAGCCACTTTCTAAGCCCCTttggaccaatattttagttcgaat
ta
Run BLAST on NCBI

transcript from alignment at scaffold_451:514205..519842+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066156 ID=TCONS_00066156|Name=TCONS_00066156|organism=Clytia hemisphaerica|type=transcript|length=5638bp|location=Sequence derived from alignment at scaffold_451:514205..519842+ (Clytia hemisphaerica)
TATTATGAAGACGCCGATTTCGGTTTGATATTTCTTTTGGATGTTTCCTT
TTTTTGTCTCAAAACTGTAATGTGATATCTTTCTCAAGGCTTTTTCAGAT
TGGTGTAGAAGTTGGgtttactttttttaataattgtGACTGTTCCTGTT
TTTTAGATCGTTTTCTCACAATATTGATGTTTATTATTCCAAAACGAAAT
CGGATTTTTCAACTGGttataaatttgaattttttcggCATACCCGTTCC
TCGcgtattttgtctttttgatgCTTAAATAGATAGAATAgaatcgatat
tttacgtggatagcccagtaatttaggacttttaggcagtcattgttttc
acggggtccacggccagctggcttggctatctatgaactgaacagaaTAT
TGGAAGGAGCAGGGATTCGAACCGCGGAGCCCTGGTTTAAGACgatgacg
cctttgaccacttggccatcgcttaCAATACAATAGTTTTCTGAAGTCCA
TAAGTGACGTAAATAAGACtagggatacacggggacgagctTCTTTTCAT
ATCTTTACTGATatataatttctttcttttacttCAGTGTATCCACGAGT
TGACGTTGATAGCGAATTATACGGGGACGATTTCTCTTGGAACCCAAATA
ACCGAAAACCACCCAAAAGGAAACGCAGTATGTCTGATAACGAACTCATT
GGTACCCTTATGGACTGTCGGGGACACATAtgtcttatataaaacactag
atagagctactctgtcactttttgaatcaaaataatccgccatctttgat
aagGAGAAAGtagttcggtgccggcaatttgatcgATCAAGCCTATCTGT
CGCCTCGTCGCTTGGCGCCATTCAGGTTTCTTTGCCTGGTTGAATTTTCC
GGTACCAAACTGTGACCTACTTTCTGCAAAGATGGCGCATTGTTTTGCTT
CACCTGTCGTTGCTTGGGAAAtgcagagtagctctatctagtgttttata
tatgaTATCTGTGGTCGGGGACAGTAAAATAAAATGGGAAGGTTGGAAAT
CTCTCAAAAATGTTGGTTTAGTCCTGgtcgaaaaaattttgaaaaaataa
attgtcaGGGACGCATATGGCATTATTACACGTTATTTTTTTTAAGCATA
GAATTCATTTGACCTGAGGCCGGGCATAACCAATTTCTATTGTTCTGTAA
TAATGGATGTATTGTTATCGAGCCCAAATCTCAGCATACTTATAAACGTT
ATTcttctaaattaaaaaaaaaaccgtaTTTGTACCACTAGTTAGACGAG
ACTTGTGTACCTGCTAGCACACAACATTCCTTCAACATTCATTtagcgtt
atatggacgttgtaaacattaaacgaacgttgaaacaacgttgtgtgccc
gCTGGGTACCAGCTGGGTACCTGCCTCTTAATGAGAAGGTTGCGACTCTC
AGTAatttattaccgagtttatgtatcggatgATATCGAGGGTGGAGGTA
AGTGAAGTCGACGTAAAACAAAGTCGAATATaaatatcgcctttgctcac
cttaATAGActgtattttggtgtttttgccgTCGTCGAGCAAAATGGGCG
GCGATTTTGGTGAAATGtaaactttgctttataccatCTCCTTCGACGAA
TACATCgccgttgacaaatcaaaagggCCAATCACAAAGTTACTGTCGGA
GAAAGCCAAGAGTTTTTCTGTCTAGCTAGCCTTAAATTTGAGATTGGCCC
ATTTTGTATGGTGAGGAGGGTCCCATCTACATGAAACagggtcaatctca
aaatttatgctcagataaacagaaaaattcttagTTTTCTCAGGCAATAA
TTTTGAGTTTGGACCTTTTTATTTGTCAACGGCGACATAAGCTCGCTATT
GAATCATGTAAACATTTTATTTCTTTAGTCCGCAAACCGTGGACTTGATT
TGTCAACGGCGACATAAGCTCGCTATTgaatcatgaaaatattttaatat
ttctttAGCCCGCAAACCGTCAGGAGTGACACCTTCAGCTTCATCAACAT
CAGCAACAACGATGACAACGATAAAGAAACTAAAAGAAGATGACTTCGAC
CCTTTCTTTGCACCTGATGAAGATGTTAAAGTAAATTTCCAAACTCTTAA
AATAAGTGTCTCACTTTCTGTccagaaatatttttcaagactttttctTC
TATTCTGTGACTACTTAAAAAAATTCtagtgaaaaggaaaaaaataaagt
ttttttttgattttgctgcCTTGTATTGTCAATTCTGGTCTCAATTTTAA
GCTCTCTATGTTCATGCATGGAAATCACAgatatcatattcttttacaaa
ctagataggctaactgtttaaagattttccgtgaaagtgtgtccagtttt
gaAGTCGACTAGTCCGCCATGATGCATTCTATTTTACCTTGGagtttcga
acgttcgaatttcaaaacatttgaattgCGCTGTTGtttacaaaatttga
aaacaagattGCGGACTAGTGAGCTCTAAAACTGGACACGCTTTCTTTTA
TATGAGAAATCCGATCCAGTCAAATAGTTAGAGAGCAGTGCTGGGACCAG
TGATAGCCATTGTATAGTTTGATAACGAAAATCATATTTTTACATGTTGA
AGTTTACAAATGAATCCAAACTAAAAGCACTTTTTTATTATATTCTTTCT
TCAAAGAAACCGGCTCAAAGAAATAGAAGCACTTCTTCGACCAGCGGTAA
GTGTATGCTATTTTATATCTTAAGCAGATTATATCATTTCATATACCTAG
TTTTTTTACAATTCTTCTGAGTATTATAAAAATGCCGTAAAATAAGTTTC
CTTCAGATTGACCTAAACACTGAAACCCAACCAACAGTCATCCCATCCTT
TGAACGTTCCTCTCCCCACTCCTTTGatcattaccgagtttatgtatcgg
aggatatcgagggcgacggtaagtgaaatcgatacaaaacaaagtcgata
gttcatgtacggctctatatcgcctttgctcacctaaacagacgacgata
tcttggtgtttttaccgtcatcgagcaaagtggacggtgatttcggTCCT
Gtgtcagctttgctttataccgtccccctcgatttatctcgaatacataa
actcgctatttacAGGCCCAGCGGAGAGGGTGACTAGGGTTGCAGAATAA
TGGGTATGTGCAGACCGGACTAGACCTTAGAGAGACTCAATTAGTGCGAA
AAGTTACCCGGAGCTCCAGTATATAAGTTCATCATTTTATAACAAACGTC
GAGTCATTCGAGTAACCTTCGCATGGGGTGAGGGAAAAGACCTTAGAACT
AATATAACTCTCCATCATAACTGGAACACGCACGGAGACTTttctcgagt
tatggagtaaggtttataagacatttttaactgaagggactaGGAAACTT
GACATtcaagacattcgagttatagatgttcgagttaaagagactgtaCT
TTACCCTCTTGCTCCaaactttttttactttaagGTTTACCCATTGAGCG
GCTCTCTTACTTTTCGTGAGTTTTTTAGTGTAAAGTTTACCAAGAGACTA
AACACTGTATCACCACATCCTTCTGATAGCTCTAACGCATTTTTCCTCAA
TCTCTTTTAGATGGGAGACAGAAAAGCGTCAAATCAAACCTTGTTGGAGG
ACTGGGGCCGAGTTCAAAAGCACCAATAAAAAAGAAGCCTAAAACCTCAA
CCACGAAGCAACNCTTGTTGGAGGACTAGGGCCGAGTTCAAAAGCACCAA
TAAAAAAGAAGCCTAAAACCTCAACCACGAAGCAACGGTTAGGGAAATTG
TTGAAATTGGACAAAACTGGTACCCGGTATGTAAGATGATGGTAATGAAC
ATTTGTGAAACGTTCGTCTTTCTATTTAGATCGTTTTCGTCATGTGCAat
acccactgacctttatatatccctggaccaagctataccCGCcttctttg
atcgaagtttttttgaattggtacccgtaaagaagccattaagaattaac
gtctaacggcgctatattatcaaaagttttcgagggaaagtagatctata
tatcaaagattttgcttgactgggaatgagaaacttggtccagggtatat
aaaagTCAGTGGTAATACCCAAACGTAAAGTTGTAATTGAACTTTTCAGC
GAAATACCTAGACTATGCTCTAGTCGTGTCAAGAGTCGAAAGCTTCCATC
GTTTAATTGAGTTTAATTGATTTTTGGACGTTTTCAATACTTTTCACATC
ATAAGCATGCTAACTCATCTTATTACTAAGAATATCAACACTGAGAAATA
TTCTTAGAAATAACATGACGAGTTATTCACAGATTTATTCTTTGGGAGTG
ATGTTATTCCAAATTCGGAATGACGTAACAACGCATAAATCACAAAATAT
AACTCGCGAATTATGGATCTTGATTTGACCTGCCAACTCGTTTTCAATaa
accttatcggagtttttgtttttctaaaacagcgatgcattgttggattg
tttcgggggtataacaatagaattccctccaggaattcctaagagatttc
tattgtaatacccccgaagcaatcccacaatgcatggCGTTTTTAGAAAA
ATCNggaattcctaagagatttctattgtaatacccccgaagcaatccca
caatgcatggcgtttttagaataattaaaaactccgataagatctatgtC
TAGTTTGTccctttgttttctttttaaacttttacctTTCAAGATatcgt
tgttttttataagaacattttaagaaattaATAATTTATTGTATGTAATT
AAGTGACGTAGTTTAATGATGTATGTTATTATATTCAGTAATGTTTTTAA
TACCCAGTCTCTGTCGATGACCCGCCCTTCCGATTGTTTTGTTGTTAGGG
CGCCACCGCCACCGCCACTGCCCAACGTTCTTCtaagttttaagttttaa
tgCTGGTTTCcttcaatgggcttttccagaaaaaaaccgtacaccccctg
ttgaggagctccaaccttttgtgacctacccccttggaattccaggcaat
tttaggatcatacccctctggaattccgaatttttacaaattttcaatca
ctATCCGCTTTGGAATTTCCCCTtctttttgacggattttcgcctaccct
tatggaattccactgcatttcaaaccttacccccttggaacggaaatgga
cctcctcaacggGGAGGGTCCAATAACTTTCACATTATGTAGTTCTTTGG
TATGGTTTTTTCTATCACCGCTTCCTCAGAGCATCAAAATATAAAACTGC
TCATTTTTATACGTGGCAACTTGAAAGTTTTATGATTTAACCTTTATGTT
GAATCTACTTCTGTATATAagatataaacttttaattcCACTTGATCTAT
CTATACCTTGACTTGTTTTTCGTTTGAAATAATTGTGTAGTgtttgtttt
agtttttatcTGTTATTCGGAGACTcaattgactctctctaattcgatct
tcacgggtccaaaaattttattttgtaaagAGTAATTTATTTAAGCCACT
TTCTAAGCCCCTttggaccaatattttagttcgaatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041410XLOC_041410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066156-exon-scaffold_451-1491911889:514205..514226TCONS_00066156-exon-scaffold_451-1491911889:514205..514226Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:514205..514226TCONS_00066156-exon-scaffold_451-1510915933:514205..514226Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:514205..514226TCONS_00066156-exon-scaffold_451-1575043694:514205..514226Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:514792..514881TCONS_00066156-exon-scaffold_451-1491911889:514792..514881Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:514792..514881TCONS_00066156-exon-scaffold_451-1510915933:514792..514881Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:514792..514881TCONS_00066156-exon-scaffold_451-1575043694:514792..514881Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:516213..516334TCONS_00066156-exon-scaffold_451-1491911889:516213..516334Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:516213..516334TCONS_00066156-exon-scaffold_451-1510915933:516213..516334Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:516213..516334TCONS_00066156-exon-scaffold_451-1575043694:516213..516334Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:516911..516950TCONS_00066156-exon-scaffold_451-1491911889:516911..516950Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:516911..516950TCONS_00066156-exon-scaffold_451-1510915933:516911..516950Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:516911..516950TCONS_00066156-exon-scaffold_451-1575043694:516911..516950Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:517865..519842TCONS_00066156-exon-scaffold_451-1491911889:517865..519842Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:517865..519842TCONS_00066156-exon-scaffold_451-1510915933:517865..519842Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:517865..519842TCONS_00066156-exon-scaffold_451-1575043694:517865..519842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:514205..519842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	6.63814e-05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0694022	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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