TCONS_00066156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066156
Unique NameTCONS_00066156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066156 ID=TCONS_00066156|Name=TCONS_00066156|organism=Clytia hemisphaerica|type=transcript|length=2252bp
TATTATGAAGACGCCGATTTCGTGTATCCACGAGTTGACGTTGATAGCGA
ATTATACGGGGACGATTTCTCTTGGAACCCAAATAACCGAAAACCACCCA
AAAGGAAACGCACCCGCAAACCGTCAGGAGTGACACCTTCAGCTTCATCA
ACATCAGCAACAACGATGACAACGATAAAGAAACTAAAAGAAGATGACTT
CGACCCTTTCTTTGCACCTGATGAAGATGTTAAAAAACCGGCTCAAAGAA
ATAGAAGCACTTCTTCGACCAGCGATGGGAGACAGAAAAGCGTCAAATCA
AACCTTGTTGGAGGACTGGGGCCGAGTTCAAAAGCACCAATAAAAAAGAA
GCCTAAAACCTCAACCACGAAGCAACNCTTGTTGGAGGACTAGGGCCGAG
TTCAAAAGCACCAATAAAAAAGAAGCCTAAAACCTCAACCACGAAGCAAC
GGTTAGGGAAATTGTTGAAATTGGACAAAACTGGTACCCGGTATGTAAGA
TGATGGTAATGAACATTTGTGAAACGTTCGTCTTTCTATTTAGATCGTTT
TCGTCATGTGCAatacccactgacctttatatatccctggaccaagctat
accCGCcttctttgatcgaagtttttttgaattggtacccgtaaagaagc
cattaagaattaacgtctaacggcgctatattatcaaaagttttcgaggg
aaagtagatctatatatcaaagattttgcttgactgggaatgagaaactt
ggtccagggtatataaaagTCAGTGGTAATACCCAAACGTAAAGTTGTAA
TTGAACTTTTCAGCGAAATACCTAGACTATGCTCTAGTCGTGTCAAGAGT
CGAAAGCTTCCATCGTTTAATTGAGTTTAATTGATTTTTGGACGTTTTCA
ATACTTTTCACATCATAAGCATGCTAACTCATCTTATTACTAAGAATATC
AACACTGAGAAATATTCTTAGAAATAACATGACGAGTTATTCACAGATTT
ATTCTTTGGGAGTGATGTTATTCCAAATTCGGAATGACGTAACAACGCAT
AAATCACAAAATATAACTCGCGAATTATGGATCTTGATTTGACCTGCCAA
CTCGTTTTCAATaaaccttatcggagtttttgtttttctaaaacagcgat
gcattgttggattgtttcgggggtataacaatagaattccctccaggaat
tcctaagagatttctattgtaatacccccgaagcaatcccacaatgcatg
gCGTTTTTAGAAAAATCNggaattcctaagagatttctattgtaataccc
ccgaagcaatcccacaatgcatggcgtttttagaataattaaaaactccg
ataagatctatgtCTAGTTTGTccctttgttttctttttaaacttttacc
tTTCAAGATatcgttgttttttataagaacattttaagaaattaATAATT
TATTGTATGTAATTAAGTGACGTAGTTTAATGATGTATGTTATTATATTC
AGTAATGTTTTTAATACCCAGTCTCTGTCGATGACCCGCCCTTCCGATTG
TTTTGTTGTTAGGGCGCCACCGCCACCGCCACTGCCCAACGTTCTTCtaa
gttttaagttttaatgCTGGTTTCcttcaatgggcttttccagaaaaaaa
ccgtacaccccctgttgaggagctccaaccttttgtgacctacccccttg
gaattccaggcaattttaggatcatacccctctggaattccgaattttta
caaattttcaatcactATCCGCTTTGGAATTTCCCCTtctttttgacgga
ttttcgcctacccttatggaattccactgcatttcaaaccttaccccctt
ggaacggaaatggacctcctcaacggGGAGGGTCCAATAACTTTCACATT
ATGTAGTTCTTTGGTATGGTTTTTTCTATCACCGCTTCCTCAGAGCATCA
AAATATAAAACTGCTCATTTTTATACGTGGCAACTTGAAAGTTTTATGAT
TTAACCTTTATGTTGAATCTACTTCTGTATATAagatataaacttttaat
tcCACTTGATCTATCTATACCTTGACTTGTTTTTCGTTTGAAATAATTGT
GTAGTgtttgttttagtttttatcTGTTATTCGGAGACTcaattgactct
ctctaattcgatcttcacgggtccaaaaattttattttgtaaagAGTAAT
TTATTTAAGCCACTTTCTAAGCCCCTttggaccaatattttagttcgaat
ta
Run BLAST on NCBI

transcript from alignment at scaffold_451:514205..519842+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066156 ID=TCONS_00066156|Name=TCONS_00066156|organism=Clytia hemisphaerica|type=transcript|length=5638bp|location=Sequence derived from alignment at scaffold_451:514205..519842+ (Clytia hemisphaerica)
TATTATGAAGACGCCGATTTCGGTTTGATATTTCTTTTGGATGTTTCCTT TTTTTGTCTCAAAACTGTAATGTGATATCTTTCTCAAGGCTTTTTCAGAT TGGTGTAGAAGTTGGgtttactttttttaataattgtGACTGTTCCTGTT TTTTAGATCGTTTTCTCACAATATTGATGTTTATTATTCCAAAACGAAAT CGGATTTTTCAACTGGttataaatttgaattttttcggCATACCCGTTCC TCGcgtattttgtctttttgatgCTTAAATAGATAGAATAgaatcgatat tttacgtggatagcccagtaatttaggacttttaggcagtcattgttttc acggggtccacggccagctggcttggctatctatgaactgaacagaaTAT TGGAAGGAGCAGGGATTCGAACCGCGGAGCCCTGGTTTAAGACgatgacg cctttgaccacttggccatcgcttaCAATACAATAGTTTTCTGAAGTCCA TAAGTGACGTAAATAAGACtagggatacacggggacgagctTCTTTTCAT ATCTTTACTGATatataatttctttcttttacttCAGTGTATCCACGAGT TGACGTTGATAGCGAATTATACGGGGACGATTTCTCTTGGAACCCAAATA ACCGAAAACCACCCAAAAGGAAACGCAGTATGTCTGATAACGAACTCATT GGTACCCTTATGGACTGTCGGGGACACATAtgtcttatataaaacactag atagagctactctgtcactttttgaatcaaaataatccgccatctttgat aagGAGAAAGtagttcggtgccggcaatttgatcgATCAAGCCTATCTGT CGCCTCGTCGCTTGGCGCCATTCAGGTTTCTTTGCCTGGTTGAATTTTCC GGTACCAAACTGTGACCTACTTTCTGCAAAGATGGCGCATTGTTTTGCTT CACCTGTCGTTGCTTGGGAAAtgcagagtagctctatctagtgttttata tatgaTATCTGTGGTCGGGGACAGTAAAATAAAATGGGAAGGTTGGAAAT CTCTCAAAAATGTTGGTTTAGTCCTGgtcgaaaaaattttgaaaaaataa attgtcaGGGACGCATATGGCATTATTACACGTTATTTTTTTTAAGCATA GAATTCATTTGACCTGAGGCCGGGCATAACCAATTTCTATTGTTCTGTAA TAATGGATGTATTGTTATCGAGCCCAAATCTCAGCATACTTATAAACGTT ATTcttctaaattaaaaaaaaaaccgtaTTTGTACCACTAGTTAGACGAG ACTTGTGTACCTGCTAGCACACAACATTCCTTCAACATTCATTtagcgtt atatggacgttgtaaacattaaacgaacgttgaaacaacgttgtgtgccc gCTGGGTACCAGCTGGGTACCTGCCTCTTAATGAGAAGGTTGCGACTCTC AGTAatttattaccgagtttatgtatcggatgATATCGAGGGTGGAGGTA AGTGAAGTCGACGTAAAACAAAGTCGAATATaaatatcgcctttgctcac cttaATAGActgtattttggtgtttttgccgTCGTCGAGCAAAATGGGCG GCGATTTTGGTGAAATGtaaactttgctttataccatCTCCTTCGACGAA TACATCgccgttgacaaatcaaaagggCCAATCACAAAGTTACTGTCGGA GAAAGCCAAGAGTTTTTCTGTCTAGCTAGCCTTAAATTTGAGATTGGCCC ATTTTGTATGGTGAGGAGGGTCCCATCTACATGAAACagggtcaatctca aaatttatgctcagataaacagaaaaattcttagTTTTCTCAGGCAATAA TTTTGAGTTTGGACCTTTTTATTTGTCAACGGCGACATAAGCTCGCTATT GAATCATGTAAACATTTTATTTCTTTAGTCCGCAAACCGTGGACTTGATT TGTCAACGGCGACATAAGCTCGCTATTgaatcatgaaaatattttaatat ttctttAGCCCGCAAACCGTCAGGAGTGACACCTTCAGCTTCATCAACAT CAGCAACAACGATGACAACGATAAAGAAACTAAAAGAAGATGACTTCGAC CCTTTCTTTGCACCTGATGAAGATGTTAAAGTAAATTTCCAAACTCTTAA AATAAGTGTCTCACTTTCTGTccagaaatatttttcaagactttttctTC TATTCTGTGACTACTTAAAAAAATTCtagtgaaaaggaaaaaaataaagt ttttttttgattttgctgcCTTGTATTGTCAATTCTGGTCTCAATTTTAA GCTCTCTATGTTCATGCATGGAAATCACAgatatcatattcttttacaaa ctagataggctaactgtttaaagattttccgtgaaagtgtgtccagtttt gaAGTCGACTAGTCCGCCATGATGCATTCTATTTTACCTTGGagtttcga acgttcgaatttcaaaacatttgaattgCGCTGTTGtttacaaaatttga aaacaagattGCGGACTAGTGAGCTCTAAAACTGGACACGCTTTCTTTTA TATGAGAAATCCGATCCAGTCAAATAGTTAGAGAGCAGTGCTGGGACCAG TGATAGCCATTGTATAGTTTGATAACGAAAATCATATTTTTACATGTTGA AGTTTACAAATGAATCCAAACTAAAAGCACTTTTTTATTATATTCTTTCT TCAAAGAAACCGGCTCAAAGAAATAGAAGCACTTCTTCGACCAGCGGTAA GTGTATGCTATTTTATATCTTAAGCAGATTATATCATTTCATATACCTAG TTTTTTTACAATTCTTCTGAGTATTATAAAAATGCCGTAAAATAAGTTTC CTTCAGATTGACCTAAACACTGAAACCCAACCAACAGTCATCCCATCCTT TGAACGTTCCTCTCCCCACTCCTTTGatcattaccgagtttatgtatcgg aggatatcgagggcgacggtaagtgaaatcgatacaaaacaaagtcgata gttcatgtacggctctatatcgcctttgctcacctaaacagacgacgata tcttggtgtttttaccgtcatcgagcaaagtggacggtgatttcggTCCT Gtgtcagctttgctttataccgtccccctcgatttatctcgaatacataa actcgctatttacAGGCCCAGCGGAGAGGGTGACTAGGGTTGCAGAATAA TGGGTATGTGCAGACCGGACTAGACCTTAGAGAGACTCAATTAGTGCGAA AAGTTACCCGGAGCTCCAGTATATAAGTTCATCATTTTATAACAAACGTC GAGTCATTCGAGTAACCTTCGCATGGGGTGAGGGAAAAGACCTTAGAACT AATATAACTCTCCATCATAACTGGAACACGCACGGAGACTTttctcgagt tatggagtaaggtttataagacatttttaactgaagggactaGGAAACTT GACATtcaagacattcgagttatagatgttcgagttaaagagactgtaCT TTACCCTCTTGCTCCaaactttttttactttaagGTTTACCCATTGAGCG GCTCTCTTACTTTTCGTGAGTTTTTTAGTGTAAAGTTTACCAAGAGACTA AACACTGTATCACCACATCCTTCTGATAGCTCTAACGCATTTTTCCTCAA TCTCTTTTAGATGGGAGACAGAAAAGCGTCAAATCAAACCTTGTTGGAGG ACTGGGGCCGAGTTCAAAAGCACCAATAAAAAAGAAGCCTAAAACCTCAA CCACGAAGCAACNCTTGTTGGAGGACTAGGGCCGAGTTCAAAAGCACCAA TAAAAAAGAAGCCTAAAACCTCAACCACGAAGCAACGGTTAGGGAAATTG TTGAAATTGGACAAAACTGGTACCCGGTATGTAAGATGATGGTAATGAAC ATTTGTGAAACGTTCGTCTTTCTATTTAGATCGTTTTCGTCATGTGCAat acccactgacctttatatatccctggaccaagctataccCGCcttctttg atcgaagtttttttgaattggtacccgtaaagaagccattaagaattaac gtctaacggcgctatattatcaaaagttttcgagggaaagtagatctata tatcaaagattttgcttgactgggaatgagaaacttggtccagggtatat aaaagTCAGTGGTAATACCCAAACGTAAAGTTGTAATTGAACTTTTCAGC GAAATACCTAGACTATGCTCTAGTCGTGTCAAGAGTCGAAAGCTTCCATC GTTTAATTGAGTTTAATTGATTTTTGGACGTTTTCAATACTTTTCACATC ATAAGCATGCTAACTCATCTTATTACTAAGAATATCAACACTGAGAAATA TTCTTAGAAATAACATGACGAGTTATTCACAGATTTATTCTTTGGGAGTG ATGTTATTCCAAATTCGGAATGACGTAACAACGCATAAATCACAAAATAT AACTCGCGAATTATGGATCTTGATTTGACCTGCCAACTCGTTTTCAATaa accttatcggagtttttgtttttctaaaacagcgatgcattgttggattg tttcgggggtataacaatagaattccctccaggaattcctaagagatttc tattgtaatacccccgaagcaatcccacaatgcatggCGTTTTTAGAAAA ATCNggaattcctaagagatttctattgtaatacccccgaagcaatccca caatgcatggcgtttttagaataattaaaaactccgataagatctatgtC TAGTTTGTccctttgttttctttttaaacttttacctTTCAAGATatcgt tgttttttataagaacattttaagaaattaATAATTTATTGTATGTAATT AAGTGACGTAGTTTAATGATGTATGTTATTATATTCAGTAATGTTTTTAA TACCCAGTCTCTGTCGATGACCCGCCCTTCCGATTGTTTTGTTGTTAGGG CGCCACCGCCACCGCCACTGCCCAACGTTCTTCtaagttttaagttttaa tgCTGGTTTCcttcaatgggcttttccagaaaaaaaccgtacaccccctg ttgaggagctccaaccttttgtgacctacccccttggaattccaggcaat tttaggatcatacccctctggaattccgaatttttacaaattttcaatca ctATCCGCTTTGGAATTTCCCCTtctttttgacggattttcgcctaccct tatggaattccactgcatttcaaaccttacccccttggaacggaaatgga cctcctcaacggGGAGGGTCCAATAACTTTCACATTATGTAGTTCTTTGG TATGGTTTTTTCTATCACCGCTTCCTCAGAGCATCAAAATATAAAACTGC TCATTTTTATACGTGGCAACTTGAAAGTTTTATGATTTAACCTTTATGTT GAATCTACTTCTGTATATAagatataaacttttaattcCACTTGATCTAT CTATACCTTGACTTGTTTTTCGTTTGAAATAATTGTGTAGTgtttgtttt agtttttatcTGTTATTCGGAGACTcaattgactctctctaattcgatct tcacgggtccaaaaattttattttgtaaagAGTAATTTATTTAAGCCACT TTCTAAGCCCCTttggaccaatattttagttcgaatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041410XLOC_041410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066156-exon-scaffold_451-1491911889:514205..514226TCONS_00066156-exon-scaffold_451-1491911889:514205..514226Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:514205..514226TCONS_00066156-exon-scaffold_451-1510915933:514205..514226Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:514205..514226TCONS_00066156-exon-scaffold_451-1575043694:514205..514226Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:514792..514881TCONS_00066156-exon-scaffold_451-1491911889:514792..514881Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:514792..514881TCONS_00066156-exon-scaffold_451-1510915933:514792..514881Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:514792..514881TCONS_00066156-exon-scaffold_451-1575043694:514792..514881Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:516213..516334TCONS_00066156-exon-scaffold_451-1491911889:516213..516334Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:516213..516334TCONS_00066156-exon-scaffold_451-1510915933:516213..516334Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:516213..516334TCONS_00066156-exon-scaffold_451-1575043694:516213..516334Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:516911..516950TCONS_00066156-exon-scaffold_451-1491911889:516911..516950Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:516911..516950TCONS_00066156-exon-scaffold_451-1510915933:516911..516950Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:516911..516950TCONS_00066156-exon-scaffold_451-1575043694:516911..516950Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1491911889:517865..519842TCONS_00066156-exon-scaffold_451-1491911889:517865..519842Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1510915933:517865..519842TCONS_00066156-exon-scaffold_451-1510915933:517865..519842Clytia hemisphaericaexon
TCONS_00066156-exon-scaffold_451-1575043694:517865..519842TCONS_00066156-exon-scaffold_451-1575043694:517865..519842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:514205..519842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 6.63814e-05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0694022 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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