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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066133 ID=TCONS_00066133|Name=TCONS_00066133|organism=Clytia hemisphaerica|type=transcript|length=2962bp
GTTTTAGTCCATATAGAAAATCAAGGAATTACAGATAAAAAAGAGACTGG
AATTCTATTGAAACCACTGAAATCCAACAAGTTGAATTGGTCCAAAACCG
AGTCTGGAAATTCAATCAATTTCTAGATCTGTGTCACAGATATGTACACA
GTGATCATGCTGACAGAGAAATGGTTGTTTGGATTCCTTCTGGTTCATAT
TTTGTGTTGTTCTTCCGTGTCATCGAATATTTGCTCTCAATTCCAACTGG
ATTGCCCTTCAAAGAGATCTGATAAAAGTATTGGTTTTCGGTTAATCAGC
ATTCATGGCGaaaattccaacaaacaacaagtAGACGTcaaagatgacgt
cattgaaagaTTAATGGCGGATGGTTCACTTGCCCCAGGTTCCTTCCTAC
CAACACGAGCCAAAAAGGAGCAAGAAAAATTTAGAGGCGTTCCAAGATCA
ACAAAAACTTATGGAGATTTAAGGCGCAAGTTGTTTCAAATTCGAAACTT
TGCTTTCCTGAAAAATGAGCAAGACTCCCTATTCAATGATCGAGAAGATC
TAGATCTGCCATATGGAGATGTCAGTCCTTTAATGGAGAATCTTCCTTTC
GCTAAATTTGAGCATTTAGATACTCCACATGATGCAAAAGAGCCTGTCAT
AttgaaaaatgaatatatcaaCTTGGCTGCAGAACAAAGCCAAGAAGCAG
CTCCTGGAAAGAAAATCGATTTCCCCAAGCTCGAGAAATTGGTCTTGCTA
AAGAATCTTGTCAAGAATATTGAAAGTTCAGCTTCAGATAACGGAAATTC
ATTGGCGCCCGATGACATGACGAGTCCTTTTtccaagtttgaaaaatcgt
tCTTGCCGAAAAGAATCAGCAGGGGAAAGGCTGAAAACTTTGATTCAGGT
GAGATCGGGAACTCGATGGTGCCCAAAAAGATGAACAGCCCACAGCACAA
GTCTCAGGAATTCCTAAAATCGGCCAAGACCAAGAGAGAAGCTGATATTT
CAGTTCTGGATGATGTGAATTCCATGCCAACTACCAATTTATATGAAAAA
GACACAGTTAATACAGTAGGCTACTGGCAAATATTGAAACAAGGAGTCAG
GAAAGATTCAGATGGTTTGAATGGCTTAAAAGACACTGAAAATAAAATGC
ATGGGGATCTAATTAAGCAACAAGATCTTATTTTCTTAGTTGCCAATGAG
GAAACTAAAAATAGAGGATttcaattttaatgtttttgttttgctggatt
tgttttttttttttgcatttggtTCCATTCATTAATTGTCACTGACTGTC
ActgacccactggaaaatctggcaaaaaAATTCGTCTCctgtgggaaaat
accctggtatttcagccccactgggaaattgactttgacttCATCCccct
cgaaattcaatgtttaaaaattacactccacaaccatccccattggattt
tttaaccttggaacaatagaatctcTATCCCCATCGGGATTTTAATACGA
ATTTTTATCATCATTGAGgagaaaagttccaccggggctgtgagatgTCC
AAATGAAAGATTCAGATTCCGAAACAAATGAATCTTCATCGTAAACGGAG
AATAAGTGTTTCAAAAGACATTATGAATAGATGGTTCTTCCTTTTGTCAT
ATTCTTGATACGAAAATCAGCGTCATCAATCTCCTAAAATTTGAGCAGCT
TTATATctttaaatgttttattttttttaactgtttCATTATATACAATG
TCACTTACAAAACTaatggtaattatttttacctatttacaatgaaagaa
attaaagaaagcTTATGGAAGTTGATAATAACTCTGTTTGGGTCCCCCgg
gcccgggggtactagggttgcgagctgactttcgacccttggacttactg
ggactaaaaaggagaaagcaaaggaaaattttgtgaattttacgaccctt
accaggacaaatttgaccaattttgaccaaatttcgaattttcctatttc
tcctacccttagtggggctgaaatttgattttctgatttttctgaccctt
agcgggactttggaaatctaaaaaaggtacccttaagggcggtacATACC
GTTCCCTCCATTTGCCTAAGTACCCCCCCCTTCGGGTTTGGGTACACTTC
TGTTTTCAACAATCCCAGCTggcacacaacgttattttaacgttcatcta
acgttatatggacgttgtgaacgttagataaacgttgaaacaacgttgtg
tgccagttggggTGATCAGCGAAAAGATAATGAACTTctcatccaaaatc
tttgaagtctTCAGACGGTCTTAgctttttgggtttcaagcctaaaaatg
ttcttaacatatgttcttcttttcagcattttttgagtatttttgtccat
tttcctaagaaaacaggtgttttagagccaacaaagccttaaatgttctt
aacatgttcttgagattttggccaccgaagtctttttcttatatagtttg
ttcttataaaaaaaaatgttttggctTAATCAAGTTAACTTAGTTTGATA
AGATAAAATCAATACAATATATCAGTTTTTCCGACTTGCTTGCTTTTGTT
TAGTGTTTAGAATTAAAGGACAATACcccttttgcaaaaaaaaactaaat
cttGTCAANACTTGCTTTTGTTTAGTTAAGGGACAATACcccttttgcaa
aaaaaactaaaTCTTGACGTAACACTGGTTCAAGACATTTCAATCTAAGT
CAGAAATATGAGGGCCCAGTCATCCATCATAACATCATTGTTATTGATTG
TTGTATGGAAGTTTCCCAAGTGTTACCAAAATGTTACGTTTTGTTAAATC
CGACATTTTGTAAGAAAAACGTTTAAATGCTAAAGATACgatataggcca
tttcacagttgaaatggatcatgggtaatcaggactaattgcgcctccat
aacggcttcccg Run BLAST on NCBI protein sequence of TCONS_00066133-protein >TCONS_00066133-protein ID=TCONS_00066133-protein|Name=TCONS_00066133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MYTVIMLTEKWLFGFLLVHILCCSSVSSNICSQFQLDCPSKRSDKSIGFR
LISIHGENSNKQQVDVKDDVIERLMADGSLAPGSFLPTRAKKEQEKFRGV
PRSTKTYGDLRRKLFQIRNFAFLKNEQDSLFNDREDLDLPYGDVSPLMEN
LPFAKFEHLDTPHDAKEPVILKNEYINLAAEQSQEAAPGKKIDFPKLEKL
VLLKNLVKNIESSASDNGNSLAPDDMTSPFSKFEKSFLPKRISRGKAENF
DSGEIGNSMVPKKMNSPQHKSQEFLKSAKTKREADISVLDDVNSMPTTNL
YEKDTVNTVGYWQILKQGVRKDSDGLNGLKDTENKMHGDLIKQQDLIFLV
ANEETKNRGFQF Run BLAST on NCBI transcript from alignment at scaffold_451:336162..340865+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066133 ID=TCONS_00066133|Name=TCONS_00066133|organism=Clytia hemisphaerica|type=transcript|length=4704bp|location=Sequence derived from alignment at scaffold_451:336162..340865+ (Clytia hemisphaerica)
GTTTTAGTCCATATAGAAAATCAAGGAATTACAGATAAAAAAGAGACTGG
AATTCTATTGAAACCACTGAAATCCAACAAGTTGAATTGGTCCAAAACCG
AGTCTGGAAATTCAATCAATTTCTAGATCTGTGTCACAGATATGTACACA
GTGATCATGCTGACAGAGAAATGGTTGTTTGGATTCCTTCTGGTTCATAT
TTTGTGTTGTTCTTCCGTGTCATCGAATATTTGCTCTCAATTCCAACTGG
ATTGCCCTTCAAAGAGATCTGATAAAAGTGTAAGTAAAGGGATGTTTAAA
GAGATTTATTAAGGAGAATAACGTGCACCTCCCCCGTACTTTATCAAGGA
GAATAATCCAATGATTCACacccaaaagttttccacattttgaaCGTGCA
AGAAAacaaatctccaagttcaagacaAATTTTAACTGAATATGTGAGGT
GGTTTCCGATTGTTTTCATCCATATTCAACGCGATAACCATTTTCAGAAG
TTCTTCAGATCCGCCGTTGTGGTTTTTATCACCAGGAAATTTTACCACGT
ATGTCTACTATATATATTATCTCCCCAGTCTCCCTGGATCCGCCGGGCCA
ACAAATGAGAGAGCTCAAGTATAGGGGAGATTTACATGGTGGGGAGATTT
CAGCCTCGCCCCTTTTGAGCAaattctcaaattcctagcaaatTGTGTCT
CATTTTGAGCATTCAGCCTCTTTACTTTAACTGTTGTTTCGCCGGGCCTG
GTTTGAAGTTGAAATTTAATTTCCAGTAAAAAGTCGTCTAGTCCCGTTGA
TGAGATTCATGCACACCTTTAAGCCCGGAAACCATGTGATGAAAACCCGC
TTGCTGATTTCGATCTTTCCAATTGTTATGATGACGATGGCTTCACGACA
GGTTTATTCATAGCCATTATAAAAagactggtctggaaggcttttgtctg
tTTCTGTTGTTAAAAGATAGGGCttgtaccaaaatcgatttattttgcaa
actttttgatcatgtgattagaaattagaccaatcccaagaggagatttt
ggtaacgtgataaaaaagtatgcaaatcgcaactttttgtttctaacaaa
aaaaaaattgaacaaaaagctaaaatagCACATTGCCAGACCAGGGTTTA
TTTGAAGGCATGTGCaggttgaaaattaattttccatTTGATAAAGTAAA
ATATGCTCCCCTTCcttagtaagtaagtctgcgaccgcagtcggaggcga
cccgaaggctcctctttcgatagctatctatccgaaggtaggggagggcg
ccactctttctccctggatttctccacttaccctaaatccttctcttagt
tgctgagcatcaagcagagagacatcaagtaccattttgggaatctttgg
tatgacccggctgggggttgaacccacaaccttgcgaaccgtagccggat
gctctaccactgtactacggtcgctctCTCTACGCTCCCCTTCCTTAAGA
ACTTTCATTATCATTTATATATAGTAGACACACGTGGTGAAATTTCCGGG
TGATAAAAACCgtaaaataatgaatataagtGAAATTTTATATCAATCCC
CCCCCTATCGCTTCAGAATGGGCCCGATAATGGGTAATCCAGAATTTGTT
TGGTATCCAGCACACCCCTATCTCGCAGTCCcagtgaaactttttttttc
agtggggataaaaattcctattgaaatcttaatgggaatagaaattctat
tgtttaaatgttAAAAACTCCAGTGGAGATGATTTGGGAGTGCAAATTTT
AGACTTTgattttcgagtggggatgaaataaaagtcaatttcccagtgag
gCTGAAactccagggtattttcccactgggaaccaaatttttgtcgaatt
ttcagtagggctggggtcccagtgggtcagTGACACAGAGGTGTTTCAGC
TTAGAATCTTAATGAGGGAAATTCTTTACACAAAGTTTGATCTTGAGATT
AATTAATGTGTTTATTTTTAGATTGGTTTTCGGTTAATCAGCATTCATGG
CGaaaattccaacaaacaacaagtAGACGTcaaagatgacgtcattgaaa
gaTTAATGGCGGATGGTTCACTTGCCCCAGGTTCCTTCCTACCAACACGA
GCCAAAAAGGAGCAAGAAAAATTTAGAGGCGTTCCAAGATCAACAAAAAC
TTATGGAGATTTAAGGCGCAAGTTGTTTCAAATTCGAAACTTTGCTTTCC
TGAAAAATGAGCAAGACTCCCTATTCAATGATCGAGAAGATCTAGATCTG
CCATATGGAGATGTCAGTCCTTTAATGGAGAATCTTCCTTTCGCTAAATT
TGAGCATTTAGATACTCCACATGATGCAAAAGAGCCTGTCATAttgaaaa
atgaatatatcaaCTTGGCTGCAGAACAAAGCCAAGAAGCAGCTCCTGGA
AAGAAAATCGATTTCCCCAAGCTCGAGAAATTGGTCTTGCTAAAGAATCT
TGTCAAGAATATTGAAAGTTCAGCTTCAGATAACGGAAATTCATTGGCGC
CCGATGACATGACGAGTCCTTTTtccaagtttgaaaaatcgttCTTGCCG
AAAAGAATCAGCAGGGGAAAGGCTGAAAACTTTGATTCAGGTGAGATCGG
GAACTCGATGGTGCCCAAAAAGATGAACAGCCCACAGCACAAGTCTCAGG
AATTCCTAAAATCGGCCAAGACCAAGAGAGAAGCTGATATTTCAGTTCTG
GATGATGTGAATTCCATGCCAACTACCAATTTATATGAAAAAGACACAGT
TAATACAGTAGGCTACTGGCAAATATTGAAACAAGGAGTCAGGAAAGATT
CAGATGGTTTGAATGGCTTAAAAGACACTGAAAATAAAATGCATGGGGAT
CTAATTAAGCAACAAGATCTTATTTTCTTAGTTGCCAATGAGGAAACTAA
AAATAGAGGATttcaattttaatgtttttgttttgctggatttgtttttt
ttttttgcatttggtTCCATTCATTAATTGTCACTGACTGTCActgaccc
actggaaaatctggcaaaaaAATTCGTCTCctgtgggaaaataccctggt
atttcagccccactgggaaattgactttgacttCATCCccctcgaaattc
aatgtttaaaaattacactccacaaccatccccattggattttttaacct
tggaacaatagaatctcTATCCCCATCGGGATTTTAATACGAATTTTTAT
CATCATTGAGgagaaaagttccaccggggctgtgagatgTCCAAATGAAA
GATTCAGATTCCGAAACAAATGAATCTTCATCGTAAACGGAGAATAAGTG
TTTCAAAAGACATTATGAATAGATGGTTCTTCCTTTTGTCATATTCTTGA
TACGAAAATCAGCGTCATCAATCTCCTAAAATTTGAGCAGCTTTATATct
ttaaatgttttattttttttaactgtttCATTATATACAATGTCACTTAC
AAAACTaatggtaattatttttacctatttacaatgaaagaaattaaaga
aagcTTATGGAAGTTGATAATAACTCTGTTTGGGTCCCCCgggcccgggg
gtactagggttgcgagctgactttcgacccttggacttactgggactaaa
aaggagaaagcaaaggaaaattttgtgaattttacgacccttaccaggac
aaatttgaccaattttgaccaaatttcgaattttcctatttctcctaccc
ttagtggggctgaaatttgattttctgatttttctgacccttagcgggac
tttggaaatctaaaaaaggtacccttaagggcggtacATACCGTTCCCTC
CATTTGCCTAAGTACCCCCCCCTTCGGGTTTGGGTACACTTCTGTTTTCA
ACAATCCCAGCTggcacacaacgttattttaacgttcatctaacgttata
tggacgttgtgaacgttagataaacgttgaaacaacgttgtgtgccagtt
ggggTGATCAGCGAAAAGATAATGAACTTctcatccaaaatctttgaagt
ctTCAGACGGTCTTAgctttttgggtttcaagcctaaaaatgttcttaac
atatgttcttcttttcagcattttttgagtatttttgtccattttcctaa
gaaaacaggtgttttagagccaacaaagccttaaatgttcttaacatgtt
cttgagattttggccaccgaagtctttttcttatatagtttgttcttata
aaaaaaaatgttttggctTAATCAAGTTAACTTAGTTTGATAAGATAAAA
TCAATACAATATATCAGTTTTTCCGACTTGCTTGCTTTTGTTTAGTGTTT
AGAATTAAAGGACAATACcccttttgcaaaaaaaaactaaatcttGTCAA
NACTTGCTTTTGTTTAGTTAAGGGACAATACcccttttgcaaaaaaaact
aaaTCTTGACGTAACACTGGTTCAAGACATTTCAATCTAAGTCAGAAATA
TGAGGGCCCAGTCATCCATCATAACATCATTGTTATTGATTGTTGTATGG
AAGTTTCCCAAGTGTTACCAAAATGTTACGTTTTGTTAAATCCGACATTT
TGTAAGAAAAACGTTTAAATGCTAAAGATACgatataggccatttcacag
ttgaaatggatcatgggtaatcaggactaattgcgcctccataacggctt
cccg Coding sequence (CDS) from alignment at scaffold_451:336162..340865+ >TCONS_00066133 ID=TCONS_00066133|Name=TCONS_00066133|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_451:336162..340865+ (Clytia hemisphaerica)
ATGTACACAGTGATCATGCTGACAGAGAAATGGTTGTTTGGATTCCTTCT
GGTTCATATTTTGTGTTGTTCTTCCGTGTCATCGAATATTTGCTCTCAAT
TCCAACTGGATTGCCCTTCAAAGAGATCTGATAAAAGTATTGGTTTTCGG
TTAATCAGCATTCATGGCGaaaattccaacaaacaacaagtAGACGTcaa
agatgacgtcattgaaagaTTAATGGCGGATGGTTCACTTGCCCCAGGTT
CCTTCCTACCAACACGAGCCAAAAAGGAGCAAGAAAAATTTAGAGGCGTT
CCAAGATCAACAAAAACTTATGGAGATTTAAGGCGCAAGTTGTTTCAAAT
TCGAAACTTTGCTTTCCTGAAAAATGAGCAAGACTCCCTATTCAATGATC
GAGAAGATCTAGATCTGCCATATGGAGATGTCAGTCCTTTAATGGAGAAT
CTTCCTTTCGCTAAATTTGAGCATTTAGATACTCCACATGATGCAAAAGA
GCCTGTCATAttgaaaaatgaatatatcaaCTTGGCTGCAGAACAAAGCC
AAGAAGCAGCTCCTGGAAAGAAAATCGATTTCCCCAAGCTCGAGAAATTG
GTCTTGCTAAAGAATCTTGTCAAGAATATTGAAAGTTCAGCTTCAGATAA
CGGAAATTCATTGGCGCCCGATGACATGACGAGTCCTTTTtccaagtttg
aaaaatcgttCTTGCCGAAAAGAATCAGCAGGGGAAAGGCTGAAAACTTT
GATTCAGGTGAGATCGGGAACTCGATGGTGCCCAAAAAGATGAACAGCCC
ACAGCACAAGTCTCAGGAATTCCTAAAATCGGCCAAGACCAAGAGAGAAG
CTGATATTTCAGTTCTGGATGATGTGAATTCCATGCCAACTACCAATTTA
TATGAAAAAGACACAGTTAATACAGTAGGCTACTGGCAAATATTGAAACA
AGGAGTCAGGAAAGATTCAGATGGTTTGAATGGCTTAAAAGACACTGAAA
ATAAAATGCATGGGGATCTAATTAAGCAACAAGATCTTATTTTCTTAGTT
GCCAATGAGGAAACTAAAAATAGAGGATttcaattttaaATGTACACAGT
GATCATGCTGACAGAGAAATGGTTGTTTGGATTCCTTCTGGTTCATATTT
TGTGTTGTTCTTCCGTGTCATCGAATATTTGCTCTCAATTCCAACTGGAT
TGCCCTTCAAAGAGATCTGATAAAAGTATTGGTTTTCGGTTAATCAGCAT
TCATGGCGaaaattccaacaaacaacaagtAGACGTcaaagatgacgtca
ttgaaagaTTAATGGCGGATGGTTCACTTGCCCCAGGTTCCTTCCTACCA
ACACGAGCCAAAAAGGAGCAAGAAAAATTTAGAGGCGTTCCAAGATCAAC
AAAAACTTATGGAGATTTAAGGCGCAAGTTGTTTCAAATTCGAAACTTTG
CTTTCCTGAAAAATGAGCAAGACTCCCTATTCAATGATCGAGAAGATCTA
GATCTGCCATATGGAGATGTCAGTCCTTTAATGGAGAATCTTCCTTTCGC
TAAATTTGAGCATTTAGATACTCCACATGATGCAAAAGAGCCTGTCATAt
tgaaaaatgaatatatcaaCTTGGCTGCAGAACAAAGCCAAGAAGCAGCT
CCTGGAAAGAAAATCGATTTCCCCAAGCTCGAGAAATTGGTCTTGCTAAA
GAATCTTGTCAAGAATATTGAAAGTTCAGCTTCAGATAACGGAAATTCAT
TGGCGCCCGATGACATGACGAGTCCTTTTtccaagtttgaaaaatcgttC
TTGCCGAAAAGAATCAGCAGGGGAAAGGCTGAAAACTTTGATTCAGGTGA
GATCGGGAACTCGATGGTGCCCAAAAAGATGAACAGCCCACAGCACAAGT
CTCAGGAATTCCTAAAATCGGCCAAGACCAAGAGAGAAGCTGATATTTCA
GTTCTGGATGATGTGAATTCCATGCCAACTACCAATTTATATGAAAAAGA
CACAGTTAATACAGTAGGCTACTGGCAAATATTGAAACAAGGAGTCAGGA
AAGATTCAGATGGTTTGAATGGCTTAAAAGACACTGAAAATAAAATGCAT
GGGGATCTAATTAAGCAACAAGATCTTATTTTCTTAGTTGCCAATGAGGA
AACTAAAAATAGAGGATttcaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066133-exon-scaffold_451-1491911889:336162..336440 | TCONS_00066133-exon-scaffold_451-1491911889:336162..336440 | Clytia hemisphaerica | exon |
| TCONS_00066133-exon-scaffold_451-1510915933:336162..336440 | TCONS_00066133-exon-scaffold_451-1510915933:336162..336440 | Clytia hemisphaerica | exon |
| TCONS_00066133-exon-scaffold_451-1575043694:336162..336440 | TCONS_00066133-exon-scaffold_451-1575043694:336162..336440 | Clytia hemisphaerica | exon |
| TCONS_00066133-exon-scaffold_451-1491911889:338183..340865 | TCONS_00066133-exon-scaffold_451-1491911889:338183..340865 | Clytia hemisphaerica | exon |
| TCONS_00066133-exon-scaffold_451-1510915933:338183..340865 | TCONS_00066133-exon-scaffold_451-1510915933:338183..340865 | Clytia hemisphaerica | exon |
| TCONS_00066133-exon-scaffold_451-1575043694:338183..340865 | TCONS_00066133-exon-scaffold_451-1575043694:338183..340865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:336162..340865 + |
Blast
The following BLAST results are available for this feature:
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