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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066129 ID=TCONS_00066129|Name=TCONS_00066129|organism=Clytia hemisphaerica|type=transcript|length=2487bp
CTTAGACTAACAGACCACACCAGAGGTAAGTACACCATGGTTTCGCCGAT
ATCTCGAAGACGGGGCAATCAAAAGATCTCTAGAAACAATATTACCATAA
GAACATCTCAGCGTACGGAGTTGAATCATCTATTAAGCATTCTGGAGAAA
GATAATCGagaATTCGAACGTGATTTAAGAATGTTGGCAGATCGATCAGA
CGCAGATTTGTCAACAAGACAAAAGATTATCGATCAACACAATCAAACAC
TTGAAACAAAATTACAACGGATTCGAATGTTGTTATTACAACTTGAAGAA
ACAAACACATCATTTGCCACCTACTGAAGACAtctttcgaccgtagccgc
caatttctgcgcgggcatttttttgtccgttttaccaccctaaaaccgtc
caaGTGTTTTTTTGCgcgcctaaagacaatagaaaaaactgTAAAGAAAT
AAGAATTGGATTGAGCTTAGGGTTGATaaaaagtggcacgcgcctgacca
cgcgactacggtcgaaatgATGTATTAATATCAATTCTGCATTTCCTCAA
TGTATGTCTATCAATCCGGATAAACGTTATCAAGAAGCCGGTTGATGTGA
AGGCCAAGTGACTCAGGCGACTCAAAACAGTAGACAATGGAATATTTCTT
CcgaaatgaacttgaattgacaaattTCAGATTGTCATAAAGCATTGCTC
CTATAAAAACAGAAATAGTACCACAGAGAGTGACAGGCTAATGGAAGGAC
CGATGCATAGCCAACAATAAGTAATCCAGCGGTGATTTAGAAAGACATTT
AGAAAGATTGTCCGACTAATTCGAAGCTAAACTGaataaaaactattaaa
atgTGGATCAATTTTCGGATTCCTATAGGCACTTAAAATAAATGATGACT
GAGAAACCTGGAATGGTGACTAGTTAGAACTTGGTTAATGGTTTATGTTT
GATTCTGGTTAAccatttattttttgataactCAAAAAGGCTTCAAggat
taaccctttaagtgccacggtccttTCTTCAATAGTTATGGTGAAATTTa
tataagaaaagtaaaaaacataAAGATCATAAAAATACACCTGTCTTcgt
tcaaaaaagttgaatgaaaGGGACTAGGTCGGAGTTTTCCAGGGTTGGAT
GGACGTCAAATTTTTGTCATTGTATTGATACACTCATACTTACGCTTATT
TTGACGGCATTTGATCCCGANGATTTAGAAAGACATTTAGAAAGACTGTC
CGGCTGATTGGAAACTTAACTGAAGTAAAAACTATCGAAATGTGGCTCAA
TTTCTCAATCCCAATGAGCACATAATATAAATAATGATTTTTAGAACCTG
GAATGGTGACTAATTAATGGTTTATGGTTTAAtattctggaaaaaaaatt
tacacatagttaaccatatattttttaataactCAAAAAGGATCTAAGGA
TTAaacctttaagtgccacggtccttTTTTCAATAGTTATGGTGAAATTT
atataagaaaagtaaaaaacataAAGATCATAAAAATACACCTGTCTTCg
ttcgaaaaagttgaatgaaAGGGACTAGGTCAGAGTTTGCCAGGGTTGAA
TGGACGTCAAATTTTTGAATCATTGTACTGATACACTCATACTTACGCTT
GTTTTGACGGCATTTGATCCCGATAAACTTGAGCCTAATCCcttttaaaa
gtgttaaagcTGATACTGACTAGATGTAAAATATCTTGCAagaattttca
atgtttttcaacTTAAAATGCAATCAGGACAATCTGGATAGTTAAATTAT
ATTGTATGTTGAATATCTGTAATGTTTATCTTCCTTTGCCAAAATATTGG
TTCTTTGCTTTTTCCCACATGGCTGGTGAAGGGAATTCGTCTTTCCCATG
CTTTCCAAGGATGGAATTTCTAATATCCCTCTTTCCAAAATATTGGTTCT
TCGCTTTCTCCCACATGGCTGGCGAGGGGAATTCGTCTTTCCCATGCTTT
CCGAGGATGGAATTTCTAAATTCTCTCTTTCCAAAATATTGGGATTTTGC
TTTTTCCCACATACCTGGTGAGGGAAATTCGTCTTTCCTATTCATTCCAA
AAGCGTCATTTTCAATTTCCCTCACCAGTGACCTCCGAGAGTTATCTTTT
CCAAAATTCTTCCTTCCAAATCTTCTCATCAGGGAATCTCCTCGCTTCCA
GATCCCCAGAGAAGGATTTACCCTTAAGATTGAGTGAAGGGAATCTCCTC
GTCTCCAAACACTAAGTGAGGGTGATTCCAaagatttcttcattttcgac
CCCAGGCTCAGGGAATCGTCTTTCTTTCCAATAGCCAGGAAAGAGGATCG
ACCTCTTTTGGGAATTCCCCGCCGGGAATCTTTACGATATGTCTCCATAG
CTTGTGATTTTGCAGTTTCCCACATTCCACCACTTGGCAAATCATTCTCA
CCATGAGAATTTATCAATTGCTGTGCGTCATTTGGGC Run BLAST on NCBI transcript from alignment at scaffold_451:280100..284557+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066129 ID=TCONS_00066129|Name=TCONS_00066129|organism=Clytia hemisphaerica|type=transcript|length=4458bp|location=Sequence derived from alignment at scaffold_451:280100..284557+ (Clytia hemisphaerica)
CTTAGACTAACAGACCACACCAGAGgtaaaaaaggtaaaattatttgaaa
tgaaAGGATTATTTCATTGCCTTTATGACTAACTAACTAAATTatagaaa
ttcaaaatatctaTTTTACAGTAGATCCAGCTTTGCCggctttaaaagaa
agttttttacaaaagtttgaAGGCTGATATTTTTGTTCTTGTGGCTTTTA
AAGTACACTGAgcacactttttttaatttctcagCTAGTCCCTTGATTGC
AAATTTTTTTGGCGTGAGCAAATTTTTGCCTAATGCAATAATGTAATAGG
GACGAATGGTCGGGTCGAAGGGACGATGCTTACTTTCACTATTTTTTGCG
TAATAAACCGATTTCGGCGATTTTCGttctcttaagggctctgaccatag
tccaaaaattgatttaggtatttgaacataaaagttatatttcaggttcc
ttaacacttttaacaaagaattgccttaataaattgctttttaatcgaat
cccttaagagtaattaagaattNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattca
ctatggtcagagcccttaatataCCAAAATCTTTTAGCATTATGTCGTGA
TGAAGTGTGTCGATCGTGGCCCCATTTCTAGAAAGTAATGATTATTTTCA
TCCAATTTTTCAGGTAAGTACACCATGGTTTCGCCGATATCTCGAAGACG
GGGCAATCAAAAGATCTCTAGAAACAATATTACCATAAGAACATCTCAGC
GTACGGAGTTGAATCATCTATTAAGCATTCTGGAGAAAGATAATCGGTAA
GAACTATCACCAAAAGATTCTGGGTTCCGTTTCCCAAGTGGAGTTTCAAG
TTCACAGCGTCGTTTAGTTGCcgataaattataaaaaaaacttctcacag
aaaaattggcaaaaatatcgtccccggtgaaaAATTATACTATTGTCCGT
gctcagaaaaatttaataaataaatgtTCACCGCAAGATATTGTGCTTAT
TTTTTCCATTCCCACTGAATGTTCTGGCTCGAAAATAATGGAGCTCAAAT
CACCAGTCATGAAAAAACATAGGAATATTAATCTCCATCCAATTTTGGTA
CATTATTTTTATAGCCCCACAGGTTCAAAAAatcccactgggtctgtgag
aaaaggGTGTCTAAAGAATGCTAAATTAGGTCTTCGTTCGGTAATTTCAG
ATCTGCGTTTGCTGACGGAAAAAACTCTGTCGTCGGACTCTTAAAATGTA
AATAAAGTTTAGACAGATTTGCCAACCATCGACCCTTATGAGAAATCTTT
TAACTAATTTGATCTTTGCACATTATAGAGAACGATGGTCGGTCTATGTT
GTCCTCAATTTTGTAGAGAGAAGGGCCACACTTACCAAGTGTTAATTTCT
GCCGCTATAACATGGGGGCTGGATGTTAGGGTTAGTCCGCGAGTTTTAAC
GAAGatctgaaatttattttttatttcagagaATTCGAACGTGATTTAAG
AATGTTGGCAGATCGATCAGACGCAGATTTGTCAACAAGACAAAAGATTA
TCGATCAACACAATCAAACACTTGAAACAAAATTACAACGGATTCGAATG
TTGTTATTACAACTTGAAGAAACAAACACATCATTTGCCACCTACTGAAG
ACAtctttcgaccgtagccgccaatttctgcgcgggcatttttttgtccg
ttttaccaccctaaaaccgtccaaGTGTTTTTTTGCgcgcctaaagacaa
tagaaaaaactgTAAAGAAATAAGAATTGGATTGAGCTTAGGGTTGATaa
aaagtggcacgcgcctgaccacgcgactacggtcgaaatgATGTATTAAT
ATCAATTCTGCATTTCCTCAATGTATGTCTATCAATCCGGATAAACGTTA
TCAAGAAGCCGGTTGATGTGAAGGCCAAGTGACTCAGGCGACTCAAAACA
GTAGACAATGGAATATTTCTTCcgaaatgaacttgaattgacaaattTCA
GATTGTCATAAAGCATTGCTCCTATAAAAACAGAAATAGTACCACAGAGA
GTGACAGGCTAATGGAAGGACCGATGCATAGCCAACAATAAGTAATCCAG
CGGTGATTTAGAAAGACATTTAGAAAGATTGTCCGACTAATTCGAAGCTA
AACTGaataaaaactattaaaatgTGGATCAATTTTCGGATTCCTATAGG
CACTTAAAATAAATGATGACTGAGAAACCTGGAATGGTGACTAGTTAGAA
CTTGGTTAATGGTTTATGTTTGATTCTGGTTAAccatttattttttgata
actCAAAAAGGCTTCAAggattaaccctttaagtgccacggtccttTCTT
CAATAGTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATCA
TAAAAATACACCTGTCTTcgttcaaaaaagttgaatgaaaGGGACTAGGT
CGGAGTTTTCCAGGGTTGGATGGACGTCAAATTTTTGTCATTGTATTGAT
ACACTCATACTTACGCTTATTTTGACGGCATTTGATCCCGANGATTTAGA
AAGACATTTAGAAAGACTGTCCGGCTGATTGGAAACTTAACTGAAGTAAA
AACTATCGAAATGTGGCTCAATTTCTCAATCCCAATGAGCACATAATATA
AATAATGATTTTTAGAACCTGGAATGGTGACTAATTAATGGTTTATGGTT
TAAtattctggaaaaaaaatttacacatagttaaccatatattttttaat
aactCAAAAAGGATCTAAGGATTAaacctttaagtgccacggtccttTTT
TCAATAGTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATC
ATAAAAATACACCTGTCTTCgttcgaaaaagttgaatgaaAGGGACTAGG
TCAGAGTTTGCCAGGGTTGAATGGACGTCAAATTTTTGAATCATTGTACT
GATACACTCATACTTACGCTTGTTTTGACGGCATTTGATCCCGATAAACT
TGAGCCTAATCCcttttaaaagtgttaaagcTGATACTGACTAGATGTAA
AATATCTTGCAagaattttcaatgtttttcaacTTAAAATGCAATCAGGA
CAATCTGGATAGTTAAATTATATTGTATGTTGAATATCTGTAATGTTTAT
CTTCCTTTGCCAAAATATTGGTTCTTTGCTTTTTCCCACATGGCTGGTGA
AGGGAATTCGTCTTTCCCATGCTTTCCAAGGATGGAATTTCTAATATCCC
TCTTTCCAAAATATTGGTTCTTCGCTTTCTCCCACATGGCTGGCGAGGGG
AATTCGTCTTTCCCATGCTTTCCGAGGATGGAATTTCTAAATTCTCTCTT
TCCAAAATATTGGGATTTTGCTTTTTCCCACATACCTGGTGAGGGAAATT
CGTCTTTCCTATTCATTCCAAAAGCGTCATTTTCAATTTCCCTCACCAGT
GACCTCCGAGAGTTATCTTTTCCAAAATTCTTCCTTCCAAATCTTCTCAT
CAGGGAATCTCCTCGCTTCCAGATCCCCAGAGAAGGATTTACCCTTAAGA
TTGAGTGAAGGGAATCTCCTCGTCTCCAAACACTAAGTGAGGGTGATTCC
AaagatttcttcattttcgacCCCAGGCTCAGGGAATCGTCTTTCTTTCC
AATAGCCAGGAAAGAGGATCGACCTCTTTTGGGAATTCCCCGCCGGGAAT
CTTTACGATATGTCTCCATAGCTTGTGATTTTGCAGTTTCCCACATTCCA
CCACTTGGCAAATCATTCTCACCATGAGAATTTATCAATTGCTGTGCGTC
ATTTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066129-exon-scaffold_451-1491911889:280100..280124 | TCONS_00066129-exon-scaffold_451-1491911889:280100..280124 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1510915933:280100..280124 | TCONS_00066129-exon-scaffold_451-1510915933:280100..280124 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1575043694:280100..280124 | TCONS_00066129-exon-scaffold_451-1575043694:280100..280124 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1491911889:281413..281545 | TCONS_00066129-exon-scaffold_451-1491911889:281413..281545 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1510915933:281413..281545 | TCONS_00066129-exon-scaffold_451-1510915933:281413..281545 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1575043694:281413..281545 | TCONS_00066129-exon-scaffold_451-1575043694:281413..281545 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1491911889:282229..284557 | TCONS_00066129-exon-scaffold_451-1491911889:282229..284557 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1510915933:282229..284557 | TCONS_00066129-exon-scaffold_451-1510915933:282229..284557 | Clytia hemisphaerica | exon |
| TCONS_00066129-exon-scaffold_451-1575043694:282229..284557 | TCONS_00066129-exon-scaffold_451-1575043694:282229..284557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:280100..284557 + |
Blast
The following BLAST results are available for this feature:
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