TCONS_00066114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066114
Unique NameTCONS_00066114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066114 ID=TCONS_00066114|Name=TCONS_00066114|organism=Clytia hemisphaerica|type=transcript|length=682bp
AAGTTTGACAAACTATAgcataaaatgtaattttaaaattCCACACCCTA
TTGAAATCCTTCTTAGTCACCCTTTGAAAGGTCTACCGTTGATGAAACAG
GGATGCATCTTTAAAGataagtaatttttcaaatatcataAACGATGATT
AAAGCATTTTAATAACAGGGTCCACGCCACCGGGGGGTGCGGATGGCCAA
GGGACCGTAGAACCCTTATTTTTGGCCCCTTCACTTTGCGCATCATTAAA
TGGGCCCTGCTAACATTATTCTTGTCTAGAAAACATCTTACTTTGAGCCC
GCCCGTTGGTCCACCTCACACCTGCAAAACTTAATGATGCTTATGTAGAC
TATTTGGATCTACTACATATAAAAAATAATAGCAGAGCAAAAACTTACTT
AAAAGCTATAAAATATAGAGAAAGTGCTCTTTCACAAAAAAGATAAATAG
TAGCTATCTTTACATACTTACCAAATTCATAATAATCATGGCGGAATGAT
TTCTACAGAAACATGCCAGTTATGCCAGTAATAGCAAATTctaaaccaat
ttttttttagatcCAACTTGCCctactggcaaaaaccaggGTGTTTCCCT
AGAAATCACGACCTCGTGAATACAATGAATTTCAGTGATATTGTTCGAGT
CCAATCGAGTCTAAAACAAAGAGCGCCGGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_450:37370..38051

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066114 ID=TCONS_00066114|Name=TCONS_00066114|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at scaffold_450:37370..38051 (Clytia hemisphaerica)
TTTCCGGCGCTCTTTGTTTTAGACTCGATTGGACTCGAACAATATCACTG
AAATTCATTGTATTCACGAGGTCGTGATTTCTAGGGAAACACcctggttt
ttgccagtagGGCAAGTTGgatctaaaaaaaaattggtttagAATTTGCT
ATTACTGGCATAACTGGCATGTTTCTGTAGAAATCATTCCGCCATGATTA
TTATGAATTTGGTAAGTATGTAAAGATAGCTACTATTTATCTTTTTTGTG
AAAGAGCACTTTCTCTATATTTTATAGCTTTTAAGTAAGTTTTTGCTCTG
CTATTATTTTTTATATGTAGTAGATCCAAATAGTCTACATAAGCATCATT
AAGTTTTGCAGGTGTGAGGTGGACCAACGGGCGGGCTCAAAGTAAGATGT
TTTCTAGACAAGAATAATGTTAGCAGGGCCCATTTAATGATGCGCAAAGT
GAAGGGGCCAAAAATAAGGGTTCTACGGTCCCTTGGCCATCCGCACCCCC
CGGTGGCGTGGACCCTGTTATTAAAATGCTTTAATCATCGTTtatgatat
ttgaaaaattacttatCTTTAAAGATGCATCCCTGTTTCATCAACGGTAG
ACCTTTCAAAGGGTGACTAAGAAGGATTTCAATAGGGTGTGGaattttaa
aattacattttatgcTATAGTTTGTCAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041389XLOC_041389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066114-exon-scaffold_450-1491911889:37370..38051TCONS_00066114-exon-scaffold_450-1491911889:37370..38051Clytia hemisphaericaexon
TCONS_00066114-exon-scaffold_450-1510915933:37370..38051TCONS_00066114-exon-scaffold_450-1510915933:37370..38051Clytia hemisphaericaexon
TCONS_00066114-exon-scaffold_450-1575043694:37370..38051TCONS_00066114-exon-scaffold_450-1575043694:37370..38051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:37370..38051 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0750058	0.0731425	0.254776	0.166173	2.73104	2.07817	1.15718	0.631948	1.0745	0.626326	0.227973	0.949115	1.14733	1.08791	0.468498	0.319945	1.06982	1.50052	0.318931	0.750912	1.4504	1.48565	1.72	1.40736	1.53008	3.37796	1.64557	0.878096	0.666005	0.848192
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top