TCONS_00066113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066113
Unique NameTCONS_00066113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066113 ID=TCONS_00066113|Name=TCONS_00066113|organism=Clytia hemisphaerica|type=transcript|length=984bp
ATCGTTACAAATTTTACTATGCAATTATACATCATGATGGTAAAGTAGCT
TTTATAGAGCACCCCGATGACAAATCTTTCATCGATAGTCGCACAGAAAC
ACACGAGTTTGAAGCCTTGTTGGAAAGAATTGAAGAAGTTAGTCCTGATG
TTATCATCTATCACGTTTATGGAACCAAAGGAAGCACCACCTATCGCTCA
GCTTTGGAGATTCTCGACATACCAATCTTAGGATCGACAGCAGACAAACA
TTTCATCACAAACAACAAAGCTTTGACCAGATCTTTTCTAGCAGCAGCTG
ACGTGTGTATTGCACCAGGAACGGAGCTCTATCATCAGGATGTTGACGAA
TGTTTGATAACAGATTTGGAGCAGAAGCACGGCTATCCTTTGGTTGTCAA
AGCAGCTACCGTAGAGAATTCAGAGGGAGTTTTCATTGCAAAGAATCGAC
AGGATATCTTGAAGTATGTCCAAGAATGTTTCTTCTTAAGCCCAGAAGCA
GTTGTTATCGAGAAATTTATCGCTGGTCGAGAAATCAGATGTGCAGttat
tgaagatgaaaatgaaaatccatGGTTTTTACCAGTCCTCGAGTACAAAG
TCGGTGGAAATGATAATATTCGTTCACTTCAGAAGAAACTGGATACTGAA
GACTTCGAGACTTCAGGAATGATGAAATTGCGACACGAAACCACTCAAAC
CTTTCTATGTCAAAAAGCAGATTCACAATTAATCAAAGATATCAAGCGAA
TTGCCTTGAAAACTTTCGCCGCTCTGGAATTGCATGATTTTGCTATTTTC
GATTTGCGAGTTGACAAATCGGGAAAACCGTATATTTTGGAAGCAAATCT
TTTTTGCAGCTTTAATGCGGTTAGTTGGGTGAATTACTTAGCAAATCACA
TAGGTATCTCAAATGAGAGACTTTTAGAAATGACAATAAATAACGCTTTA
AAAcgtcaaaagaagaaaagcgATTCAGATGGAC
Run BLAST on NCBI

protein sequence of TCONS_00066113-protein

>TCONS_00066113-protein ID=TCONS_00066113-protein|Name=TCONS_00066113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
RYKFYYAIIHHDGKVAFIEHPDDKSFIDSRTETHEFEALLERIEEVSPDV
IIYHVYGTKGSTTYRSALEILDIPILGSTADKHFITNNKALTRSFLAAAD
VCIAPGTELYHQDVDECLITDLEQKHGYPLVVKAATVENSEGVFIAKNRQ
DILKYVQECFFLSPEAVVIEKFIAGREIRCAVIEDENENPWFLPVLEYKV
GGNDNIRSLQKKLDTEDFETSGMMKLRHETTQTFLCQKADSQLIKDIKRI
ALKTFAALELHDFAIFDLRVDKSGKPYILEANLFCSFNAVSWVNYLANHI
GISNERLLEMTINNALKRQKKKSDSDG
Run BLAST on NCBI

transcript from alignment at scaffold_450:23078..24061

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066113 ID=TCONS_00066113|Name=TCONS_00066113|organism=Clytia hemisphaerica|type=transcript|length=984bp|location=Sequence derived from alignment at scaffold_450:23078..24061 (Clytia hemisphaerica)
GTCCATCTGAATcgcttttcttcttttgacgTTTTAAAGCGTTATTTATT GTCATTTCTAAAAGTCTCTCATTTGAGATACCTATGTGATTTGCTAAGTA ATTCACCCAACTAACCGCATTAAAGCTGCAAAAAAGATTTGCTTCCAAAA TATACGGTTTTCCCGATTTGTCAACTCGCAAATCGAAAATAGCAAAATCA TGCAATTCCAGAGCGGCGAAAGTTTTCAAGGCAATTCGCTTGATATCTTT GATTAATTGTGAATCTGCTTTTTGACATAGAAAGGTTTGAGTGGTTTCGT GTCGCAATTTCATCATTCCTGAAGTCTCGAAGTCTTCAGTATCCAGTTTC TTCTGAAGTGAACGAATATTATCATTTCCACCGACTTTGTACTCGAGGAC TGGTAAAAACCatggattttcattttcatcttcaataaCTGCACATCTGA TTTCTCGACCAGCGATAAATTTCTCGATAACAACTGCTTCTGGGCTTAAG AAGAAACATTCTTGGACATACTTCAAGATATCCTGTCGATTCTTTGCAAT GAAAACTCCCTCTGAATTCTCTACGGTAGCTGCTTTGACAACCAAAGGAT AGCCGTGCTTCTGCTCCAAATCTGTTATCAAACATTCGTCAACATCCTGA TGATAGAGCTCCGTTCCTGGTGCAATACACACGTCAGCTGCTGCTAGAAA AGATCTGGTCAAAGCTTTGTTGTTTGTGATGAAATGTTTGTCTGCTGTCG ATCCTAAGATTGGTATGTCGAGAATCTCCAAAGCTGAGCGATAGGTGGTG CTTCCTTTGGTTCCATAAACGTGATAGATGATAACATCAGGACTAACTTC TTCAATTCTTTCCAACAAGGCTTCAAACTCGTGTGTTTCTGTGCGACTAT CGATGAAAGATTTGTCATCGGGGTGCTCTATAAAAGCTACTTTACCATCA TGATGTATAATTGCATAGTAAAATTTGTAACGAT

Coding sequence (CDS) from alignment at scaffold_450:23078..24061

>TCONS_00066113 ID=TCONS_00066113|Name=TCONS_00066113|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_450:23078..24061 (Clytia hemisphaerica)
TCCATCTGAATcgcttttcttcttttgacgTTTTAAAGCGTTATTTATTG
TCATTTCTAAAAGTCTCTCATTTGAGATACCTATGTGATTTGCTAAGTAA
TTCACCCAACTAACCGCATTAAAGCTGCAAAAAAGATTTGCTTCCAAAAT
ATACGGTTTTCCCGATTTGTCAACTCGCAAATCGAAAATAGCAAAATCAT
GCAATTCCAGAGCGGCGAAAGTTTTCAAGGCAATTCGCTTGATATCTTTG
ATTAATTGTGAATCTGCTTTTTGACATAGAAAGGTTTGAGTGGTTTCGTG
TCGCAATTTCATCATTCCTGAAGTCTCGAAGTCTTCAGTATCCAGTTTCT
TCTGAAGTGAACGAATATTATCATTTCCACCGACTTTGTACTCGAGGACT
GGTAAAAACCatggattttcattttcatcttcaataaCTGCACATCTGAT
TTCTCGACCAGCGATAAATTTCTCGATAACAACTGCTTCTGGGCTTAAGA
AGAAACATTCTTGGACATACTTCAAGATATCCTGTCGATTCTTTGCAATG
AAAACTCCCTCTGAATTCTCTACGGTAGCTGCTTTGACAACCAAAGGATA
GCCGTGCTTCTGCTCCAAATCTGTTATCAAACATTCGTCAACATCCTGAT
GATAGAGCTCCGTTCCTGGTGCAATACACACGTCAGCTGCTGCTAGAAAA
GATCTGGTCAAAGCTTTGTTGTTTGTGATGAAATGTTTGTCTGCTGTCGA
TCCTAAGATTGGTATGTCGAGAATCTCCAAAGCTGAGCGATAGGTGGTGC
TTCCTTTGGTTCCATAAACGTGATAGATGATAACATCAGGACTAACTTCT
TCAATTCTTTCCAACAAGGCTTCAAACTCGTGTGTTTCTGTGCGACTATC
GATGAAAGATTTGTCATCGGGGTGCTCTATAAAAGCTACTTTACCATCAT
GATGTATAATTGCATAGTAAAATTTGTAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041388XLOC_041388Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066113-proteinTCONS_00066113-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066113-exon-scaffold_450-1491911889:23078..24061TCONS_00066113-exon-scaffold_450-1491911889:23078..24061Clytia hemisphaericaexon
TCONS_00066113-exon-scaffold_450-1510915933:23078..24061TCONS_00066113-exon-scaffold_450-1510915933:23078..24061Clytia hemisphaericaexon
TCONS_00066113-exon-scaffold_450-1575043694:23078..24061TCONS_00066113-exon-scaffold_450-1575043694:23078..24061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:23078..24061 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.183111 0.0446405 0.137152 0.0881161 94.0951 68.4942 4.72706 6.03573 1.31158 3.41111 0.92758 0.762193 0.213117 0.189707 0.337923 0.547367 0.403928 0.63878 0.0486627 0.509221 0.575387 0.647662 2.54965 2.86783 0.682373 1.28509 2.40606 0.736892 17.111 9.52699
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013815ATP_grasp_subdomain_1
IPR011095Dala_Dala_lig_C
IPR011761ATP-grasp
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0008716D-alanine-D-alanine ligase activity
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008716 D-alanine-D-alanine ligase activity
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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