TCONS_00066109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066109
Unique NameTCONS_00066109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066109 ID=TCONS_00066109|Name=TCONS_00066109|organism=Clytia hemisphaerica|type=transcript|length=1531bp
TTTAGAGGACCGAGGAACAATTCCTGTATTTTTGAACAGATTGAAACGAG
AAACAGTACTGTAGTATATTTTGGGTATAAGGCATTTTGAAGAATGGAAA
GAGAAGAAACCCGTTCGTATAGTATCGAAAAACCACGTCACGCCAGCCTT
CTAGATCGCAACAACAATATACAACACCACGACAAATCATCCGATATCTC
TCACAACACAAGCGATAATGAAAACGACAGAGTCGTACGTCAGTGGTTAC
AAGAAACCGTAACCGTCGTTAAACCTTTATCCGACAAAGACGACAGGAAT
GAAACGTTATGTCGGGTATGTGGCGATATATCGTCTGGTCGACACTACGG
GCAATACACTTGTGACGGATGTTCCGGATTTTTCATGCGGTCAGTCCGTA
AGAATATGACGTACCGTTGTAAAGGGAATAAAAGTTGTATCGTAGATAAG
AAAAGAAGGAATCAATGTCAAGCATGTCGCTTCGAGAAATGTTTGGAAGT
GAAAATGAATAGATACGCGGTGCAGCAAGAGCGACAGCCGAACAATCACT
TCAGTATGCAGCATCATTCATTCCATGGGCTACCACCCTACCTCTATCCA
AGGTCAGTTGGTTACTACCCTCCACCACCCCCTCCTCCACGAATTGGCCT
GACCCGGATAGGCGGGAGCTCACTTCCCACCATGCATGATATACGGGAAC
GACATCGAGAATTCAGGATCAATTACCAACACGCATCTACTTCTTCTTCC
TTGAGACAATCACCTGGATGTGTCTCACCCCTACCTACCACTACCAAGAT
ACAGACTCCTGTTAGTCCTCCACCAAGGCTCATAGAGGCCACGAAAATTA
AAACAGAGGATGCAGTACCAGTTCAAGCACCAGAAAAGCTAGAAGATATA
GCGGCTCGGTTATTATATCATACAATCAAATGGGCTCGGTCAGTACCTGC
CTTCACAGAACTCTCCATTAGTGACCAAATCAGGCTGTTAGAAAACTCTT
GGTCAGACATTTTCGTTCTATTCGCATTCCAATGGAAACTGCTTATTGAT
TCTGGTGAAATTACAAAATCCATTGAAGAGAGGCTTAAAGATGATGAAAA
TGGTCACATTCGAGATGATTTATCAGCAGAGTTGAAACACTTGCAAGAGA
TGGCTGGCAAATTCCATTCATTTCATGTTTCAGAAGACGAATTCATTTAC
TTGAAATCTGTGGTATTGTTTAAACCagAGGTACCAGGTCTGTTGGACCC
ACGACACATTGAGAGGTGTCAAGACCGTGCTCAAATCATGCTCCGTGACC
ACGTGGTAGCCTGTACACCAGAACAACCTGCAAGATTTGGTAAATTACTT
CTATTATTACCAGAGGTGAAACGAATCACACCGAAGACCATTGAAGAAAT
ATTATACCAACAGAATCTAGGGACTTTCTCATTTGACACGCTCCTGGCTG
ATCTATTCAAACCATAATTCATATAATTTATCTATTGGTAGCAGACTTGA
TGATCAAAAAGTGTAAATATTGTAATTAGTG
Run BLAST on NCBI

protein sequence of TCONS_00066109-protein

>TCONS_00066109-protein ID=TCONS_00066109-protein|Name=TCONS_00066109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MEREETRSYSIEKPRHASLLDRNNNIQHHDKSSDISHNTSDNENDRVVRQ
WLQETVTVVKPLSDKDDRNETLCRVCGDISSGRHYGQYTCDGCSGFFMRS
VRKNMTYRCKGNKSCIVDKKRRNQCQACRFEKCLEVKMNRYAVQQERQPN
NHFSMQHHSFHGLPPYLYPRSVGYYPPPPPPPRIGLTRIGGSSLPTMHDI
RERHREFRINYQHASTSSSLRQSPGCVSPLPTTTKIQTPVSPPPRLIEAT
KIKTEDAVPVQAPEKLEDIAARLLYHTIKWARSVPAFTELSISDQIRLLE
NSWSDIFVLFAFQWKLLIDSGEITKSIEERLKDDENGHIRDDLSAELKHL
QEMAGKFHSFHVSEDEFIYLKSVVLFKPEVPGLLDPRHIERCQDRAQIML
RDHVVACTPEQPARFGKLLLLLPEVKRITPKTIEEILYQQNLGTFSFDTL
LADLFKP
Run BLAST on NCBI

transcript from alignment at scaffold_450:57560..63820-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066109 ID=TCONS_00066109|Name=TCONS_00066109|organism=Clytia hemisphaerica|type=transcript|length=6261bp|location=Sequence derived from alignment at scaffold_450:57560..63820- (Clytia hemisphaerica)
TTTAGAGGACCGAGGAACAATTCCTGTATTTTTGAACAGATTGAAACGAG
AAACAGTACTGTAGTATATTTTGGGTATAAGGCATTTTGAAGAATGGAAA
GAGAAGGTTAGTTGATTACAACTCTTGCTTCACTGATAAATTGGTGGTCA
TTATCTGGTAATTTTTATTAAACCCCTGTCTTACTGACTTGATCACTATC
TTACTGACTTGACGGTGGTCAGTTCATTACACCTCTGTCTCAGTACCCCG
GTGGCAATGTCTTTAGTACACCTCTACATCTAGACTATGCTATAGTCTAA
GTATAGTCTAAGACCAATCAAAGCCGAAGAAAATTTGCTGGAAGGAGTTT
ACAGTAGTTACAGTAGGTAGAGTTTTCCAGTGTTCTTCGAAAGGCGTAGT
AGTGTAGTGGTTATCAACCTTGATTTCCGTCTGGGAGGTCAGGGTTCGAT
TCTCACTCGATGCTATAATTCACTTGGCAAGTGAATGTACCTTCGCCCGG
GTCGATCCATGCCTTCTGAGGGGAACTGGGTACCATCACTCTGATAAAAG
AGTATGGAGGAGTTTGTCAGGCATTGCACGTGGTGTGGTGACGATACTCA
CAGGTTCAAAACCTGCGAAGATGTATGTACTCCCGTGTAGTTCAAATATC
ATCGTCTAACACCAATAACTTTGTCGCGTCGCGCAGGGTTAGCAGTGTCT
GGTAAGCGTGGTAATTTCCCTACCCTAGGGTAGGTATCCAGGGATAGGGC
CTATTCCGGATGATTAGGAGGGTTCAATTCTCTTTCTCTCTTCACTTCGA
AACAGCTGCTTTTTTTCCGTATACCACCATAACGATCATAAACTCTGCGC
GTATACTATTTTCACGCCTTTACTATCACTGTAAACGGACGATAACATTG
TCTACTCGATATCCTGTCTCAGTGAAGTGACCAATTCGGATTTTAGCAGC
CAATCCCAATCGCGGAAGACGCACAATCAGTCAATAAAAACAAGCTTACA
CTGTCTGCACCCCAAAAGTCGATGAATTATGTTTTCTTTCTGACGCCTCA
AATAATCATTGGAAATACAAAAATGAGCCTAATAACACTTATTTGTCACC
TAAAGATTCTTTCCCAATGCATAATTCCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAATACTCTTTATTTGTTGAACTAGTCTTTAATCGGACTATATT
GAAATCGATACTATTAATCGAACGAATCCGATTGTCAAACTGTTCGATTA
AAGTGACCTATTTTAATAACGGCGATGCAATAGTATGACTTGCTGATCTG
GAGCAACCTCGTTCTCTGCGTATTATCAGCTTATTGATGCTTACTGATAA
AGCTAGATGTTCTCTGACGTCTATCAGTAACGTAAATAAAGCCTGGGATA
CACGGAGAACGAGGTTGGATATGCAGTTTATTCAACGTGCCCTGTCTGTA
AGAATAATTTTTAACGTTTTCTTCTCTTAAATAGAAACCCGTTCGTATAG
TATCGAAAAACCACGTCACGCCAGCCTTCTAGATCGCAACAACAATATAC
AACACCACGACAAATCATCCGATATCTCTCACAACACAAGCGATAATGAA
AACGACAGAGTCGTACGTCAGTGGTTACAAGAAACCGTAACCGTCGTTAA
ACCTTTATCCGACAAAGACGACAGGAATGAAACGTTATGTCGGGTATGTG
GCGATATATCGTCTGGTCGACACTACGGGCAATACACTTGTGACGGATGT
TCCGGATTTTTCATGCGGTCAGTCCGTAAGAATATGACGTACCGTTGTAA
AGGGAATAAAAGTTGTATCGTAGATAAGAAAAGAAGGAATCAATGTCAAG
CATGTCGCTTCGAGAAATGTTTGGAAGTGAAAATGAATAGATACGGTAGG
AGATTTTCCCATTCTACGGTTACTCCTTTTATAAAGCTCCAACTCAAGGT
GCATTGAAGAAGATGAAAGTATTTGATACCTACATACTCAATCCTTAGAA
ACTTAACCTAAAGAAGGTTCTCAATACACATTTCCAACCGTAGTCACGCG
GTCAGGCGTGTGCCACTTAATTATTTAATCATCCCCCTAAACTTGATCCA
ATCCTTTTTTGACACCTTTTTCTATTGTCTATAGGTGCGAATAAAAGACT
GGGACGGTTTTAGGGTGGTAAAACGGACAAAGAAAAGCCCACGCAGCAGT
TGGCGGCTACGGTTGAAAAGGTGTATTACGTCTGCAATTTTAATTTAATG
CACTTGAAAAATACAGTTGACCCTTTCTTATTCGATCTCCAAGGGACCAA
GAACTTTTTCGAATTAGAGGAAGATTCAAATTATGAACGAATTTAACAAT
ACTTTAAAGCTGAGGGGACAATTTTTTCAGCTCGAATTATACAATAGAAT
TCGAAATATAGAGGTTCGAGACTACTAAATGTACATCTTTTATTATTCGT
TGAAAATTGAAAGTTATTCAATTATTTTGCAATGAACTTATAGCGGTGCA
GCAAGAGCGNCAATACTCTTTATTTGTTGAACTAGTCTTTAATCGGACTA
TATTGAAATCGATACTATTAATCGAACGAATCCGATTGTCAAACTGTTCG
ATTAAAGTGACCTATTTTAATAACGGCGATGCAATAGTATGACTTGCTGA
TCTGGAGCAACCTCGTTCTCTGCGTATTATCAGCTTATTGATGCTTACTG
ATAAAGCTAGATGTTCTCTGACGTCTATCAGTAACGTAAATAAAGCCTGG
GATACACGGAGAACGAGGTTGGATATGCAGTTTATTCAACGTGCCCTGTC
TGTAAGAATAATTTTTAACGTTTTCTTCTCTTAAATAGAAACCCGTTCGT
ATAGTATCGAAAAACCACGTCACGCCAGCCTTCTAGATCGCAACAACAAT
ATACAACACCACGACAAATCATCCGATATCTCTCACAACACAAGCGATAA
TGAAAACGACAGAGTCGTACGTCAGTGGTTACAAGAAACCGTAACCGTCG
TTAAACCTTTATCCGACAAAGACGACAGGAATGAAACGTTATGTCGGGTA
TGTGGCGATATATCGTCTGGTCGACACTACGGGCAATACACTTGTGACGG
ATGTTCCGGATTTTTCATGCGGTCAGTCCGTAAGAATATGACGTACCGTT
GTAAAGGGAATAAAAGTTGTATCGTAGATAAGAAAAGAAGGAATCAATGT
CAAGCATGTCGATTCGAGAAATGTTTGGAAGTGAAAATGAATAGATACGG
TAGGAGATTTTCCCATTCTACGGTTACTCCTTTTATAAAGCTCCAACTCA
AGGTGCATTGAAGAAGATGAAAGTATTTGATACCTACATACTCAATCCTT
AGAAACTTAACCTAAAGAAGGTTCTCAATACACATTTCCAACCGTAGTCA
CGCGGTCAGGCGTGTGCCACTTAATTATTTAATCATCCCCCTAAACTTTA
TCCAATCCTTTTTTGACACCTTTTTCTATTGTCTATAGGTGCGAATAAAA
GACTGGGACGGTTTTAGGGTGGTAAAACGGACAAAGAAAAGCCCACGCAG
CAGTTGGCGGCTACGGTTGAAAAGGTGTATTACGTCTGCAATTTTAATTT
AATGCACTTGAAAAATACAGTTGACCCTTTCTTATTCGATCTCCAAGGGA
CCAAGAACTTTTTCGAATTAGAGGAAGATTCAAATTATGAACGAATTTAA
CAATACTTTAAAGCTGAGGGGACAATTTTTTCAGCTCGAATTATACAATA
GAATTCGAAATATAGAGGTTCGAGACTACTAAATGTACATCTTTTATTAT
TCGTTGAAAATTGAAAGTTATTCAATTATTTTGCAATGAACTTATAGCGG
TGCAGCAAGAGCGACAGCCGAACAATCACTTCAGTATGCAGCATCATTCA
TTCCATGGGCTACCACCCTACCTCTATCCAAGGTCAGTTGGTTACTACCC
TCCACCACCCCCTCCTCCACGAATTGGCCTGACCCGGATAGGCGGGAGCT
CACTTCCCACCATGCATGATATACGGGAACGACATCGAGAATTCAGGATC
AATTACCAACACGCATCTACTTCTTCTTCCTTGAGACAATCACCTGGATG
TGTCTCACCCCTACCTACCACTACCAAGATACAGACTCCTGTTAGTCCTC
CACCAAGGCTCATAGAGGCCACGAAAATTAAAACAGAGGATGCAGTACCA
GTTCAAGCACCAGAAAAGCTAGAAGATATAGCGGCTCGGTTATTATATCA
TACAATCAAATGGGCTCGGTCAGTACCTGCCTTCACAGAACTCTCCATTA
GTGACCAAATCAGGCTGTTAGAAAACTCTTGGTCAGACATTTTCGTTCTA
TTCGCATTCCAATGGAAACTGCTTATTGATTCTGGTGAAATTACAAAATC
CATTGAAGAGAGGCTTAAAGATGATGAAAATGGTCACATTCGAGATGATT
TATCAGCAGAGTTGAAACACTTGCAAGAGATGGCTGGCAAATTCCATTCA
TTTCATGTTTCAGAAGACGAATTCATTTACTTGAAATCTGTGGTATTGTT
TAAACCAGGTAAAAAAAAAGGAAAGCTTTAATTTACAAAAAAAAGAACCA
CTAAACTTTTAACTGAGCAGCAATTGTTCTTACTTTTTCGAGAGATTCAA
AATTAACCAAATTCAGTGTCGATATTTTCTTTCTAGGTTTTGATCAAAAT
CGAACTGTATGATTGCAGTCTGCAGTTAGTAGTCTGTTTCCTTGCATATC
TGACGTTTTAGTAGTTTGTTTATTTGCACCCTTTCATATCTGACGGTCAA
TAGTCAGGCAATGGGATTACAAGAAATAATATACTGATAAACCCTTGCTA
TTCAAAAAAGGGATCGAGTTAACCAGAATCAAATCACGCTAAATGTAATT
TGACGTCAACCAACCTTGTGAAACTGAAAGAAGAAAATCCTCTTGTGATC
ATAGTCCGTATAAAAAACTCTGGTCTGGAAGCGTATTGTTTTAACTTTTT
TCCTCTTGGGATTGGTTTAAGATTTAATCACATGATCAAAAAGCGAGCAA
AAAAACTAATTTCTCAAACGCAAGTTCAAGTAAGAAACAATGGAAAGAAA
CAAAAGGCTTCCAGACCGGGGTTTTTTATCCGAACTATGTTGTGATGTCA
GGGCTTCTATGTGAATATATTTCAACTCCCTTCAATGAACACATGCTTTC
ATTTTTAGAGGTACCAGGTCTGTTGGACCCACGACACATTGAGAGGTGTC
AAGACCGTGCTCAAATCATGCTCCGTGACCACGTGGTAGCCTGTACACCA
GAACAACCTGCAAGATTTGGTAAATTACTTCTATTATTACCAGAGGTGAA
ACGAATCACACCGAAGACCATTGAAGAAATATTATACCAACAGAATCTAG
GGACTTTCTCATTTGACACGCTCCTGGCTGATCTATTCAAACCATAATTC
ATATAATTTATCTATTGGTAGCAGACTTGATGATCAAAAAGTGTAAATAT
TGTAATTAGTG

Coding sequence (CDS) from alignment at scaffold_450:57560..63820-

>TCONS_00066109 ID=TCONS_00066109|Name=TCONS_00066109|organism=Clytia hemisphaerica|type=CDS|length=5496bp|location=Sequence derived from alignment at scaffold_450:57560..63820- (Clytia hemisphaerica)
AGGTACCAGGTCTGTTGGACCCACGACACATTGAGAGGTGTCAAGACCGT
GCTCAAATCATGCTCCGTGACCACGTGGTAGCCTGTACACCAGAACAACC
TGCAAGATTTGGTAAATTACTTCTATTATTACCAGAGGTGAAACGAATCA
CACCGAAGACCATTGAAGAAATATTATACCAACAGAATCTAGGGACTTTC
TCATTTGACACGCTCCTGGCTGATCTATTCAAACCATAACGGTGCAGCAA
GAGCGACAGCCGAACAATCACTTCAGTATGCAGCATCATTCATTCCATGG
GCTACCACCCTACCTCTATCCAAGGTCAGTTGGTTACTACCCTCCACCAC
CCCCTCCTCCACGAATTGGCCTGACCCGGATAGGCGGGAGCTCACTTCCC
ACCATGCATGATATACGGGAACGACATCGAGAATTCAGGATCAATTACCA
ACACGCATCTACTTCTTCTTCCTTGAGACAATCACCTGGATGTGTCTCAC
CCCTACCTACCACTACCAAGATACAGACTCCTGTTAGTCCTCCACCAAGG
CTCATAGAGGCCACGAAAATTAAAACAGAGGATGCAGTACCAGTTCAAGC
ACCAGAAAAGCTAGAAGATATAGCGGCTCGGTTATTATATCATACAATCA
AATGGGCTCGGTCAGTACCTGCCTTCACAGAACTCTCCATTAGTGACCAA
ATCAGGCTGTTAGAAAACTCTTGGTCAGACATTTTCGTTCTATTCGCATT
CCAATGGAAACTGCTTATTGATTCTGGTGAAATTACAAAATCCATTGAAG
AGAGGCTTAAAGATGATGAAAATGGTCACATTCGAGATGATTTATCAGCA
GAGTTGAAACACTTGCAAGAGATGGCTGGCAAATTCCATTCATTTCATGT
TTCAGAAGACGAATTCATTTACTTGAAATCTGTGGTATTGTTTAAACCAG
AAACCCGTTCGTATAGTATCGAAAAACCACGTCACGCCAGCCTTCTAGAT
CGCAACAACAATATACAACACCACGACAAATCATCCGATATCTCTCACAA
CACAAGCGATAATGAAAACGACAGAGTCGTACGTCAGTGGTTACAAGAAA
CCGTAACCGTCGTTAAACCTTTATCCGACAAAGACGACAGGAATGAAACG
TTATGTCGGGTATGTGGCGATATATCGTCTGGTCGACACTACGGGCAATA
CACTTGTGACGGATGTTCCGGATTTTTCATGCGGTCAGTCCGTAAGAATA
TGACGTACCGTTGTAAAGGGAATAAAAGTTGTATCGTAGATAAGAAAAGA
AGGAATCAATGTCAAGCATGTCGCTTCGAGAAATGTTTGGAAGTGAAAAT
GAATAGATACGATGGAAAGAGAAGAGGTACCAGGTCTGTTGGACCCACGA
CACATTGAGAGGTGTCAAGACCGTGCTCAAATCATGCTCCGTGACCACGT
GGTAGCCTGTACACCAGAACAACCTGCAAGATTTGGTAAATTACTTCTAT
TATTACCAGAGGTGAAACGAATCACACCGAAGACCATTGAAGAAATATTA
TACCAACAGAATCTAGGGACTTTCTCATTTGACACGCTCCTGGCTGATCT
ATTCAAACCATAACGGTGCAGCAAGAGCGACAGCCGAACAATCACTTCAG
TATGCAGCATCATTCATTCCATGGGCTACCACCCTACCTCTATCCAAGGT
CAGTTGGTTACTACCCTCCACCACCCCCTCCTCCACGAATTGGCCTGACC
CGGATAGGCGGGAGCTCACTTCCCACCATGCATGATATACGGGAACGACA
TCGAGAATTCAGGATCAATTACCAACACGCATCTACTTCTTCTTCCTTGA
GACAATCACCTGGATGTGTCTCACCCCTACCTACCACTACCAAGATACAG
ACTCCTGTTAGTCCTCCACCAAGGCTCATAGAGGCCACGAAAATTAAAAC
AGAGGATGCAGTACCAGTTCAAGCACCAGAAAAGCTAGAAGATATAGCGG
CTCGGTTATTATATCATACAATCAAATGGGCTCGGTCAGTACCTGCCTTC
ACAGAACTCTCCATTAGTGACCAAATCAGGCTGTTAGAAAACTCTTGGTC
AGACATTTTCGTTCTATTCGCATTCCAATGGAAACTGCTTATTGATTCTG
GTGAAATTACAAAATCCATTGAAGAGAGGCTTAAAGATGATGAAAATGGT
CACATTCGAGATGATTTATCAGCAGAGTTGAAACACTTGCAAGAGATGGC
TGGCAAATTCCATTCATTTCATGTTTCAGAAGACGAATTCATTTACTTGA
AATCTGTGGTATTGTTTAAACCAGAAACCCGTTCGTATAGTATCGAAAAA
CCACGTCACGCCAGCCTTCTAGATCGCAACAACAATATACAACACCACGA
CAAATCATCCGATATCTCTCACAACACAAGCGATAATGAAAACGACAGAG
TCGTACGTCAGTGGTTACAAGAAACCGTAACCGTCGTTAAACCTTTATCC
GACAAAGACGACAGGAATGAAACGTTATGTCGGGTATGTGGCGATATATC
GTCTGGTCGACACTACGGGCAATACACTTGTGACGGATGTTCCGGATTTT
TCATGCGGTCAGTCCGTAAGAATATGACGTACCGTTGTAAAGGGAATAAA
AGTTGTATCGTAGATAAGAAAAGAAGGAATCAATGTCAAGCATGTCGCTT
CGAGAAATGTTTGGAAGTGAAAATGAATAGATACGATGGAAAGAGAAGAG
GTACCAGGTCTGTTGGACCCACGACACATTGAGAGGTGTCAAGACCGTGC
TCAAATCATGCTCCGTGACCACGTGGTAGCCTGTACACCAGAACAACCTG
CAAGATTTGGTAAATTACTTCTATTATTACCAGAGGTGAAACGAATCACA
CCGAAGACCATTGAAGAAATATTATACCAACAGAATCTAGGGACTTTCTC
ATTTGACACGCTCCTGGCTGATCTATTCAAACCATAACGGTGCAGCAAGA
GCGACAGCCGAACAATCACTTCAGTATGCAGCATCATTCATTCCATGGGC
TACCACCCTACCTCTATCCAAGGTCAGTTGGTTACTACCCTCCACCACCC
CCTCCTCCACGAATTGGCCTGACCCGGATAGGCGGGAGCTCACTTCCCAC
CATGCATGATATACGGGAACGACATCGAGAATTCAGGATCAATTACCAAC
ACGCATCTACTTCTTCTTCCTTGAGACAATCACCTGGATGTGTCTCACCC
CTACCTACCACTACCAAGATACAGACTCCTGTTAGTCCTCCACCAAGGCT
CATAGAGGCCACGAAAATTAAAACAGAGGATGCAGTACCAGTTCAAGCAC
CAGAAAAGCTAGAAGATATAGCGGCTCGGTTATTATATCATACAATCAAA
TGGGCTCGGTCAGTACCTGCCTTCACAGAACTCTCCATTAGTGACCAAAT
CAGGCTGTTAGAAAACTCTTGGTCAGACATTTTCGTTCTATTCGCATTCC
AATGGAAACTGCTTATTGATTCTGGTGAAATTACAAAATCCATTGAAGAG
AGGCTTAAAGATGATGAAAATGGTCACATTCGAGATGATTTATCAGCAGA
GTTGAAACACTTGCAAGAGATGGCTGGCAAATTCCATTCATTTCATGTTT
CAGAAGACGAATTCATTTACTTGAAATCTGTGGTATTGTTTAAACCAGAA
ACCCGTTCGTATAGTATCGAAAAACCACGTCACGCCAGCCTTCTAGATCG
CAACAACAATATACAACACCACGACAAATCATCCGATATCTCTCACAACA
CAAGCGATAATGAAAACGACAGAGTCGTACGTCAGTGGTTACAAGAAACC
GTAACCGTCGTTAAACCTTTATCCGACAAAGACGACAGGAATGAAACGTT
ATGTCGGGTATGTGGCGATATATCGTCTGGTCGACACTACGGGCAATACA
CTTGTGACGGATGTTCCGGATTTTTCATGCGGTCAGTCCGTAAGAATATG
ACGTACCGTTGTAAAGGGAATAAAAGTTGTATCGTAGATAAGAAAAGAAG
GAATCAATGTCAAGCATGTCGCTTCGAGAAATGTTTGGAAGTGAAAATGA
ATAGATACGATGGAAAGAGAAGAGGTACCAGGTCTGTTGGACCCACGACA
CATTGAGAGGTGTCAAGACCGTGCTCAAATCATGCTCCGTGACCACGTGG
TAGCCTGTACACCAGAACAACCTGCAAGATTTGGTAAATTACTTCTATTA
TTACCAGAGGTGAAACGAATCACACCGAAGACCATTGAAGAAATATTATA
CCAACAGAATCTAGGGACTTTCTCATTTGACACGCTCCTGGCTGATCTAT
TCAAACCATAACGGTGCAGCAAGAGCGACAGCCGAACAATCACTTCAGTA
TGCAGCATCATTCATTCCATGGGCTACCACCCTACCTCTATCCAAGGTCA
GTTGGTTACTACCCTCCACCACCCCCTCCTCCACGAATTGGCCTGACCCG
GATAGGCGGGAGCTCACTTCCCACCATGCATGATATACGGGAACGACATC
GAGAATTCAGGATCAATTACCAACACGCATCTACTTCTTCTTCCTTGAGA
CAATCACCTGGATGTGTCTCACCCCTACCTACCACTACCAAGATACAGAC
TCCTGTTAGTCCTCCACCAAGGCTCATAGAGGCCACGAAAATTAAAACAG
AGGATGCAGTACCAGTTCAAGCACCAGAAAAGCTAGAAGATATAGCGGCT
CGGTTATTATATCATACAATCAAATGGGCTCGGTCAGTACCTGCCTTCAC
AGAACTCTCCATTAGTGACCAAATCAGGCTGTTAGAAAACTCTTGGTCAG
ACATTTTCGTTCTATTCGCATTCCAATGGAAACTGCTTATTGATTCTGGT
GAAATTACAAAATCCATTGAAGAGAGGCTTAAAGATGATGAAAATGGTCA
CATTCGAGATGATTTATCAGCAGAGTTGAAACACTTGCAAGAGATGGCTG
GCAAATTCCATTCATTTCATGTTTCAGAAGACGAATTCATTTACTTGAAA
TCTGTGGTATTGTTTAAACCAGAAACCCGTTCGTATAGTATCGAAAAACC
ACGTCACGCCAGCCTTCTAGATCGCAACAACAATATACAACACCACGACA
AATCATCCGATATCTCTCACAACACAAGCGATAATGAAAACGACAGAGTC
GTACGTCAGTGGTTACAAGAAACCGTAACCGTCGTTAAACCTTTATCCGA
CAAAGACGACAGGAATGAAACGTTATGTCGGGTATGTGGCGATATATCGT
CTGGTCGACACTACGGGCAATACACTTGTGACGGATGTTCCGGATTTTTC
ATGCGGTCAGTCCGTAAGAATATGACGTACCGTTGTAAAGGGAATAAAAG
TTGTATCGTAGATAAGAAAAGAAGGAATCAATGTCAAGCATGTCGCTTCG
AGAAATGTTTGGAAGTGAAAATGAATAGATACGATGGAAAGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041384XLOC_041384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066109-exon-scaffold_450-1575043694:63715..63820TCONS_00066109-exon-scaffold_450-1575043694:63715..63820Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1575043694:61176..61586TCONS_00066109-exon-scaffold_450-1575043694:61176..61586Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1575043694:58513..59223TCONS_00066109-exon-scaffold_450-1575043694:58513..59223Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1575043694:57560..57862TCONS_00066109-exon-scaffold_450-1575043694:57560..57862Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1510915933:63715..63820TCONS_00066109-exon-scaffold_450-1510915933:63715..63820Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1510915933:61176..61586TCONS_00066109-exon-scaffold_450-1510915933:61176..61586Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1510915933:58513..59223TCONS_00066109-exon-scaffold_450-1510915933:58513..59223Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1510915933:57560..57862TCONS_00066109-exon-scaffold_450-1510915933:57560..57862Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1491911889:63715..63820TCONS_00066109-exon-scaffold_450-1491911889:63715..63820Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1491911889:61176..61586TCONS_00066109-exon-scaffold_450-1491911889:61176..61586Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1491911889:58513..59223TCONS_00066109-exon-scaffold_450-1491911889:58513..59223Clytia hemisphaericaexon
TCONS_00066109-exon-scaffold_450-1491911889:57560..57862TCONS_00066109-exon-scaffold_450-1491911889:57560..57862Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066109-proteinTCONS_00066109-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:57560..63820 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0455783	0	0	0	0	0	0	0	0	0	0	0.741415	0	0	0.000498796	0.187959	0.363728	2.17399e-09	0.688755	0.696081	0.261546	0.313409	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00066109 vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 9.206e-69
Identity = 138/393 (35.11%), Postives = 204/393 (51.91%), Query Frame = 1 
Query:  310 CRVCGDISSGRHYGQYTCDGCSGFFMRSVRKNMTYRCK-GNKS-CIVDKKRRNQCQACRFEKCLEVKMNRYAVQQERQPNNHFSMQHHSFHGLPPYLYPRSVGYYXXXXXXXRIGLTRIGGSSLPTMHDIRERHREFRINYQHASTSSSLRQSPGCVSPLPTTTKIQTPVSPPPRLIEATKIKTEDAVPVQAPEKLEDIAARLLYHTIKWARSVPAFTELSISDQIRLLENSWSDIFVLFAFQWKLLIDSGEITKSIEERLKDDENGHIRDDLSAELKHLQEMAGKFHSFHVSEDEFIYLKSVVLFKP-------EVPGLLDPRHIERCQDRAQIMLRDHVVACTPEQPARFGKLLLLLPEVKRITPKTIEEILYQQNLGTFSFDTLLADLFK 1461
            C+VCGD SSG+HYG Y CDGCSGFF RS+R+N TY CK GN+  C VDK  RNQC+ACR +KCLEV MN+ AVQ ER P                    + V  Y                ++LP         +      + A+ S++  +         T   +  P    P  +  T +   +     A E + + AARLL+ +IKWA+SVPAF+ LS+ DQ+ LLE++W ++FVL   QW + +D+  +  ++     D+ +    + + +E++ LQE+  +F    +   EF  LK +V FK        E+    +   I   QD AQ+ L  ++    P QP RFGKLLLLLP ++ I+P TIEE+ +++ +G      LL+D++K
Sbjct:   16 CKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTS--------------TIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQ--------TLVSLAQPTPKYPHEVNGTPMYLYEV----ATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL-AVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYK 381
The following BLAST results are available for this feature:
BLAST of TCONS_00066109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E19.206e-6935.11Nuclear receptor subfamily 2 group E member 1 OS=H... [more]
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