|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066108 ID=TCONS_00066108|Name=TCONS_00066108|organism=Clytia hemisphaerica|type=transcript|length=1531bp
TTTAGAGGACCGAGGAACAATTCCTGTATTTTTGAACAGATTGAAACGAG
AAACAGTACTGTAGTATATTTTGGGTATAAGGCATTTTGAAGAATGGAAA
GAGAAGAAACCCGTTCGTATAGTATCGAAAAACCACGTCACGCCAGCCTT
CTAGATCGCAACAACAATATACAACACCACGACAAATCATCCGATATCTC
TCACAACACAAGCGATAATGAAAACGACAGAGTCGTACGTCAGTGGTTAC
AAGAAACCGTAACCGTCGTTAAACCTTTATCCGACAAAGACGACAGGAAT
GAAACGTTATGTCGGGTATGTGGCGATATATCGTCTGGTCGACACTACGG
GCAATACACTTGTGACGGATGTTCCGGATTTTTCATGCGGTCAGTCCGTA
AGAATATGACGTACCGTTGTAAAGGGAATAAAAGTTGTATCGTAGATAAG
AAAAGAAGGAATCAATGTCAAGCATGTCGATTCGAGAAATGTTTGGAAGT
GAAAATGAATAGATACGCGGTGCAGCAAGAGCGACAGCCGAACAATCACT
TCAGTATGCAGCATCATTCATTCCATGGGCTACCACCCTACCTCTATCCA
AGGTCAGTTGGTTACTACCCTCCACCACCCCCTCCTCCACGAATTGGCCT
GACCCGGATAGGCGGGAGCTCACTTCCCACCATGCATGATATACGGGAAC
GACATCGAGAATTCAGGATCAATTACCAACACGCATCTACTTCTTCTTCC
TTGAGACAATCACCTGGATGTGTCTCACCCCTACCTACCACTACCAAGAT
ACAGACTCCTGTTAGTCCTCCACCAAGGCTCATAGAGGCCACGAAAATTA
AAACAGAGGATGCAGTACCAGTTCAAGCACCAGAAAAGCTAGAAGATATA
GCGGCTCGGTTATTATATCATACAATCAAATGGGCTCGGTCAGTACCTGC
CTTCACAGAACTCTCCATTAGTGACCAAATCAGGCTGTTAGAAAACTCTT
GGTCAGACATTTTCGTTCTATTCGCATTCCAATGGAAACTGCTTATTGAT
TCTGGTGAAATTACAAAATCCATTGAAGAGAGGCTTAAAGATGATGAAAA
TGGTCACATTCGAGATGATTTATCAGCAGAGTTGAAACACTTGCAAGAGA
TGGCTGGCAAATTCCATTCATTTCATGTTTCAGAAGACGAATTCATTTAC
TTGAAATCTGTGGTATTGTTTAAACCagAGGTACCAGGTCTGTTGGACCC
ACGACACATTGAGAGGTGTCAAGACCGTGCTCAAATCATGCTCCGTGACC
ACGTGGTAGCCTGTACACCAGAACAACCTGCAAGATTTGGTAAATTACTT
CTATTATTACCAGAGGTGAAACGAATCACACCGAAGACCATTGAAGAAAT
ATTATACCAACAGAATCTAGGGACTTTCTCATTTGACACGCTCCTGGCTG
ATCTATTCAAACCATAATTCATATAATTTATCTATTGGTAGCAGACTTGA
TGATCAAAAAGTGTAAATATTGTAATTAGTG Run BLAST on NCBI transcript from alignment at scaffold_450:57560..63820- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066108 ID=TCONS_00066108|Name=TCONS_00066108|organism=Clytia hemisphaerica|type=transcript|length=6261bp|location=Sequence derived from alignment at scaffold_450:57560..63820- (Clytia hemisphaerica)
TTTAGAGGACCGAGGAACAATTCCTGTATTTTTGAACAGATTGAAACGAG
AAACAGTACTGTAGTATATTTTGGGTATAAGGCATTTTGAAGAATGGAAA
GAGAAGGTTAGTTGATTACAACTCTTGCTTCACTGATAAATTGGTGGTCA
TTATCTGGTAATTTTTATTAAACCCCTGTCTTACTGACTTGATCACTATC
TTACTGACTTGACGGTGGTCAGTTCATTACACCTCTGTCTCAGTACCCCG
GTGGCAATGTCTTTAGTACACCTCTACATCTAGACTATGCTATAGTCTAA
GTATAGTCTAAGACCAATCAAAGCCGAAGAAAATTTGCTGGAAGGAGTTT
ACAGTAGTTACAGTAGGTAGAGTTTTCCAGTGTTCTTCGAAAGGCGTAGT
AGTGTAGTGGTTATCAACCTTGATTTCCGTCTGGGAGGTCAGGGTTCGAT
TCTCACTCGATGCTATAATTCACTTGGCAAGTGAATGTACCTTCGCCCGG
GTCGATCCATGCCTTCTGAGGGGAACTGGGTACCATCACTCTGATAAAAG
AGTATGGAGGAGTTTGTCAGGCATTGCACGTGGTGTGGTGACGATACTCA
CAGGTTCAAAACCTGCGAAGATGTATGTACTCCCGTGTAGTTCAAATATC
ATCGTCTAACACCAATAACTTTGTCGCGTCGCGCAGGGTTAGCAGTGTCT
GGTAAGCGTGGTAATTTCCCTACCCTAGGGTAGGTATCCAGGGATAGGGC
CTATTCCGGATGATTAGGAGGGTTCAATTCTCTTTCTCTCTTCACTTCGA
AACAGCTGCTTTTTTTCCGTATACCACCATAACGATCATAAACTCTGCGC
GTATACTATTTTCACGCCTTTACTATCACTGTAAACGGACGATAACATTG
TCTACTCGATATCCTGTCTCAGTGAAGTGACCAATTCGGATTTTAGCAGC
CAATCCCAATCGCGGAAGACGCACAATCAGTCAATAAAAACAAGCTTACA
CTGTCTGCACCCCAAAAGTCGATGAATTATGTTTTCTTTCTGACGCCTCA
AATAATCATTGGAAATACAAAAATGAGCCTAATAACACTTATTTGTCACC
TAAAGATTCTTTCCCAATGCATAATTCCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAATACTCTTTATTTGTTGAACTAGTCTTTAATCGGACTATATT
GAAATCGATACTATTAATCGAACGAATCCGATTGTCAAACTGTTCGATTA
AAGTGACCTATTTTAATAACGGCGATGCAATAGTATGACTTGCTGATCTG
GAGCAACCTCGTTCTCTGCGTATTATCAGCTTATTGATGCTTACTGATAA
AGCTAGATGTTCTCTGACGTCTATCAGTAACGTAAATAAAGCCTGGGATA
CACGGAGAACGAGGTTGGATATGCAGTTTATTCAACGTGCCCTGTCTGTA
AGAATAATTTTTAACGTTTTCTTCTCTTAAATAGAAACCCGTTCGTATAG
TATCGAAAAACCACGTCACGCCAGCCTTCTAGATCGCAACAACAATATAC
AACACCACGACAAATCATCCGATATCTCTCACAACACAAGCGATAATGAA
AACGACAGAGTCGTACGTCAGTGGTTACAAGAAACCGTAACCGTCGTTAA
ACCTTTATCCGACAAAGACGACAGGAATGAAACGTTATGTCGGGTATGTG
GCGATATATCGTCTGGTCGACACTACGGGCAATACACTTGTGACGGATGT
TCCGGATTTTTCATGCGGTCAGTCCGTAAGAATATGACGTACCGTTGTAA
AGGGAATAAAAGTTGTATCGTAGATAAGAAAAGAAGGAATCAATGTCAAG
CATGTCGCTTCGAGAAATGTTTGGAAGTGAAAATGAATAGATACGGTAGG
AGATTTTCCCATTCTACGGTTACTCCTTTTATAAAGCTCCAACTCAAGGT
GCATTGAAGAAGATGAAAGTATTTGATACCTACATACTCAATCCTTAGAA
ACTTAACCTAAAGAAGGTTCTCAATACACATTTCCAACCGTAGTCACGCG
GTCAGGCGTGTGCCACTTAATTATTTAATCATCCCCCTAAACTTGATCCA
ATCCTTTTTTGACACCTTTTTCTATTGTCTATAGGTGCGAATAAAAGACT
GGGACGGTTTTAGGGTGGTAAAACGGACAAAGAAAAGCCCACGCAGCAGT
TGGCGGCTACGGTTGAAAAGGTGTATTACGTCTGCAATTTTAATTTAATG
CACTTGAAAAATACAGTTGACCCTTTCTTATTCGATCTCCAAGGGACCAA
GAACTTTTTCGAATTAGAGGAAGATTCAAATTATGAACGAATTTAACAAT
ACTTTAAAGCTGAGGGGACAATTTTTTCAGCTCGAATTATACAATAGAAT
TCGAAATATAGAGGTTCGAGACTACTAAATGTACATCTTTTATTATTCGT
TGAAAATTGAAAGTTATTCAATTATTTTGCAATGAACTTATAGCGGTGCA
GCAAGAGCGNCAATACTCTTTATTTGTTGAACTAGTCTTTAATCGGACTA
TATTGAAATCGATACTATTAATCGAACGAATCCGATTGTCAAACTGTTCG
ATTAAAGTGACCTATTTTAATAACGGCGATGCAATAGTATGACTTGCTGA
TCTGGAGCAACCTCGTTCTCTGCGTATTATCAGCTTATTGATGCTTACTG
ATAAAGCTAGATGTTCTCTGACGTCTATCAGTAACGTAAATAAAGCCTGG
GATACACGGAGAACGAGGTTGGATATGCAGTTTATTCAACGTGCCCTGTC
TGTAAGAATAATTTTTAACGTTTTCTTCTCTTAAATAGAAACCCGTTCGT
ATAGTATCGAAAAACCACGTCACGCCAGCCTTCTAGATCGCAACAACAAT
ATACAACACCACGACAAATCATCCGATATCTCTCACAACACAAGCGATAA
TGAAAACGACAGAGTCGTACGTCAGTGGTTACAAGAAACCGTAACCGTCG
TTAAACCTTTATCCGACAAAGACGACAGGAATGAAACGTTATGTCGGGTA
TGTGGCGATATATCGTCTGGTCGACACTACGGGCAATACACTTGTGACGG
ATGTTCCGGATTTTTCATGCGGTCAGTCCGTAAGAATATGACGTACCGTT
GTAAAGGGAATAAAAGTTGTATCGTAGATAAGAAAAGAAGGAATCAATGT
CAAGCATGTCGATTCGAGAAATGTTTGGAAGTGAAAATGAATAGATACGG
TAGGAGATTTTCCCATTCTACGGTTACTCCTTTTATAAAGCTCCAACTCA
AGGTGCATTGAAGAAGATGAAAGTATTTGATACCTACATACTCAATCCTT
AGAAACTTAACCTAAAGAAGGTTCTCAATACACATTTCCAACCGTAGTCA
CGCGGTCAGGCGTGTGCCACTTAATTATTTAATCATCCCCCTAAACTTTA
TCCAATCCTTTTTTGACACCTTTTTCTATTGTCTATAGGTGCGAATAAAA
GACTGGGACGGTTTTAGGGTGGTAAAACGGACAAAGAAAAGCCCACGCAG
CAGTTGGCGGCTACGGTTGAAAAGGTGTATTACGTCTGCAATTTTAATTT
AATGCACTTGAAAAATACAGTTGACCCTTTCTTATTCGATCTCCAAGGGA
CCAAGAACTTTTTCGAATTAGAGGAAGATTCAAATTATGAACGAATTTAA
CAATACTTTAAAGCTGAGGGGACAATTTTTTCAGCTCGAATTATACAATA
GAATTCGAAATATAGAGGTTCGAGACTACTAAATGTACATCTTTTATTAT
TCGTTGAAAATTGAAAGTTATTCAATTATTTTGCAATGAACTTATAGCGG
TGCAGCAAGAGCGACAGCCGAACAATCACTTCAGTATGCAGCATCATTCA
TTCCATGGGCTACCACCCTACCTCTATCCAAGGTCAGTTGGTTACTACCC
TCCACCACCCCCTCCTCCACGAATTGGCCTGACCCGGATAGGCGGGAGCT
CACTTCCCACCATGCATGATATACGGGAACGACATCGAGAATTCAGGATC
AATTACCAACACGCATCTACTTCTTCTTCCTTGAGACAATCACCTGGATG
TGTCTCACCCCTACCTACCACTACCAAGATACAGACTCCTGTTAGTCCTC
CACCAAGGCTCATAGAGGCCACGAAAATTAAAACAGAGGATGCAGTACCA
GTTCAAGCACCAGAAAAGCTAGAAGATATAGCGGCTCGGTTATTATATCA
TACAATCAAATGGGCTCGGTCAGTACCTGCCTTCACAGAACTCTCCATTA
GTGACCAAATCAGGCTGTTAGAAAACTCTTGGTCAGACATTTTCGTTCTA
TTCGCATTCCAATGGAAACTGCTTATTGATTCTGGTGAAATTACAAAATC
CATTGAAGAGAGGCTTAAAGATGATGAAAATGGTCACATTCGAGATGATT
TATCAGCAGAGTTGAAACACTTGCAAGAGATGGCTGGCAAATTCCATTCA
TTTCATGTTTCAGAAGACGAATTCATTTACTTGAAATCTGTGGTATTGTT
TAAACCAGGTAAAAAAAAAGGAAAGCTTTAATTTACAAAAAAAAGAACCA
CTAAACTTTTAACTGAGCAGCAATTGTTCTTACTTTTTCGAGAGATTCAA
AATTAACCAAATTCAGTGTCGATATTTTCTTTCTAGGTTTTGATCAAAAT
CGAACTGTATGATTGCAGTCTGCAGTTAGTAGTCTGTTTCCTTGCATATC
TGACGTTTTAGTAGTTTGTTTATTTGCACCCTTTCATATCTGACGGTCAA
TAGTCAGGCAATGGGATTACAAGAAATAATATACTGATAAACCCTTGCTA
TTCAAAAAAGGGATCGAGTTAACCAGAATCAAATCACGCTAAATGTAATT
TGACGTCAACCAACCTTGTGAAACTGAAAGAAGAAAATCCTCTTGTGATC
ATAGTCCGTATAAAAAACTCTGGTCTGGAAGCGTATTGTTTTAACTTTTT
TCCTCTTGGGATTGGTTTAAGATTTAATCACATGATCAAAAAGCGAGCAA
AAAAACTAATTTCTCAAACGCAAGTTCAAGTAAGAAACAATGGAAAGAAA
CAAAAGGCTTCCAGACCGGGGTTTTTTATCCGAACTATGTTGTGATGTCA
GGGCTTCTATGTGAATATATTTCAACTCCCTTCAATGAACACATGCTTTC
ATTTTTAGAGGTACCAGGTCTGTTGGACCCACGACACATTGAGAGGTGTC
AAGACCGTGCTCAAATCATGCTCCGTGACCACGTGGTAGCCTGTACACCA
GAACAACCTGCAAGATTTGGTAAATTACTTCTATTATTACCAGAGGTGAA
ACGAATCACACCGAAGACCATTGAAGAAATATTATACCAACAGAATCTAG
GGACTTTCTCATTTGACACGCTCCTGGCTGATCTATTCAAACCATAATTC
ATATAATTTATCTATTGGTAGCAGACTTGATGATCAAAAAGTGTAAATAT
TGTAATTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066108-exon-scaffold_450-1575043694:63715..63820 | TCONS_00066108-exon-scaffold_450-1575043694:63715..63820 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1575043694:59822..60232 | TCONS_00066108-exon-scaffold_450-1575043694:59822..60232 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1575043694:58513..59223 | TCONS_00066108-exon-scaffold_450-1575043694:58513..59223 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1575043694:57560..57862 | TCONS_00066108-exon-scaffold_450-1575043694:57560..57862 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1510915933:63715..63820 | TCONS_00066108-exon-scaffold_450-1510915933:63715..63820 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1510915933:59822..60232 | TCONS_00066108-exon-scaffold_450-1510915933:59822..60232 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1510915933:58513..59223 | TCONS_00066108-exon-scaffold_450-1510915933:58513..59223 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1510915933:57560..57862 | TCONS_00066108-exon-scaffold_450-1510915933:57560..57862 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1491911889:63715..63820 | TCONS_00066108-exon-scaffold_450-1491911889:63715..63820 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1491911889:59822..60232 | TCONS_00066108-exon-scaffold_450-1491911889:59822..60232 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1491911889:58513..59223 | TCONS_00066108-exon-scaffold_450-1491911889:58513..59223 | Clytia hemisphaerica | exon |
| TCONS_00066108-exon-scaffold_450-1491911889:57560..57862 | TCONS_00066108-exon-scaffold_450-1491911889:57560..57862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_450 | supercontig | scaffold_450:57560..63820 - |
Blast
BLAST of TCONS_00066108 vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 9.206e-69 Identity = 138/393 (35.11%), Postives = 204/393 (51.91%), Query Frame = 1
Query: 310 CRVCGDISSGRHYGQYTCDGCSGFFMRSVRKNMTYRCK-GNKS-CIVDKKRRNQCQACRFEKCLEVKMNRYAVQQERQPNNHFSMQHHSFHGLPPYLYPRSVGYYXXXXXXXRIGLTRIGGSSLPTMHDIRERHREFRINYQHASTSSSLRQSPGCVSPLPTTTKIQTPVSPPPRLIEATKIKTEDAVPVQAPEKLEDIAARLLYHTIKWARSVPAFTELSISDQIRLLENSWSDIFVLFAFQWKLLIDSGEITKSIEERLKDDENGHIRDDLSAELKHLQEMAGKFHSFHVSEDEFIYLKSVVLFKP-------EVPGLLDPRHIERCQDRAQIMLRDHVVACTPEQPARFGKLLLLLPEVKRITPKTIEEILYQQNLGTFSFDTLLADLFK 1461
C+VCGD SSG+HYG Y CDGCSGFF RS+R+N TY CK GN+ C VDK RNQC+ACR +KCLEV MN+ AVQ ER P + V Y ++LP + + A+ S++ + T + P P + T + + A E + + AARLL+ +IKWA+SVPAF+ LS+ DQ+ LLE++W ++FVL QW + +D+ + ++ D+ + + + +E++ LQE+ +F + EF LK +V FK E+ + I QD AQ+ L ++ P QP RFGKLLLLLP ++ I+P TIEE+ +++ +G LL+D++K
Sbjct: 16 CKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTS--------------TIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQ--------TLVSLAQPTPKYPHEVNGTPMYLYEV----ATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL-AVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYK 381
The following BLAST results are available for this feature:
|
