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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066103 ID=TCONS_00066103|Name=TCONS_00066103|organism=Clytia hemisphaerica|type=transcript|length=3922bpRun BLAST on NCBI transcript from alignment at scaffold_450:141391..152664+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066103 ID=TCONS_00066103|Name=TCONS_00066103|organism=Clytia hemisphaerica|type=transcript|length=11274bp|location=Sequence derived from alignment at scaffold_450:141391..152664+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066103 vs. Swiss-Prot (Human)
Match: KIFA3 (Kinesin-associated protein 3 OS=Homo sapiens GN=KIFAP3 PE=1 SV=2) HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0 Identity = 387/639 (60.56%), Postives = 518/639 (81.06%), Query Frame = 2
Query: 56 MQGEDEARFLKRKVKGGTIDVHPNQNALVVNYELEAVILGEMGEPMMGERKECQKVIRLKSLNGGTDVSVLAKEVVDKCSLIHPSRIPEVEQLLYYLQQRKGGPKDAGLXXXXXXXIDP--FDSNEFDESANLNDVEEYMELLYDDTTSKIKGSSMILQVARNPDNLTELAQNETVLSALSRVLREEWKSSTELTTNIIYTXXXXXXXXXXXXVISHHKVGAMCLQILEQETXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXQNLLKKQDHLMRVGVYLLLNLAEDSKVEIKMKNKSIIDLLVKMMKRQNMELLILVVSFLKKLSIFKDNKDQMKEMEVMEKAAQLIPAQXXXXXXXXXXXXXXXTFDTEMRDKAVKCGLIPKLVDLISLEHHSVVVTCILYHISMDDKYRSYFSYTDCIPLVMKMILENPTDRVXXXXXXXXXXXXXXXXXXQLICEGNGLRLLMRRAIKFKDPLLMKMLRNISQHDGPTKSEFVNYISDLANIIKNFQEEEFVVECVGILGNLNIPELEYAMMLKEYDLLNFIKSKIVPGVTEDDLVLEVIIMTGTIASDEGCASLLAESGIIHDLIELLKEKQVDDELVLQIVYVFYQMVFHQATRNVIVKETRILSYF 1957
MQGED AR+LKRKVKGG IDVHP++ AL+V+YE+EA ILGEMG+PM+GERKECQK+IRLKSLN TD++ LA++VV++C LIHPS++ EVEQLLYYLQ R+ ++K K DP F+ E DE AN+ND++EY+ELLY+D K++GS++ILQ+ARNPDNL EL NET L AL+RVLRE+WK S EL TNIIY FFCFSSFS FH +I+H+K+GA+C+ I++ E K+H+LW EEL KK++ ++ ++K+YEK++KKYQ L+ KQ+ L+RV +YLLLNLAED++ E+KM+NK+I+ +LVK + R N ELLILVVSFLKKLSIF +NK+ M EM+++EK ++IP +++DLLNI LRL+LNL+FDT +R+K V+ GL+PKL L+ +++ + C+LYHISMDD+++S F+YTDCIP +MKM+ E +R+++ELI+ INLAAN+RN QLICEGNGL++LM+RA+KFKDPLLMKM+RNISQHDGPTK+ F++Y+ DLA I N +EEEFV+EC+G L NL IP+L++ ++LKEY L+ ++K K+ PG EDDLVLEV+IM GT++ D+ CA+LLA+SGII LIELL +Q DDE V QI+YVFYQMVFHQATR+VI+KET+ +Y
Sbjct: 1 MQGED-ARYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLSGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQTLRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYL 638 HSP 2 Score: 107.457 bits (267), Expect = 2.088e-23 Identity = 59/111 (53.15%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 2149 TEAPAYLIDLMHDKNEEVRKVCDNTLDIISECDSDWCSRITLEKFRWHNSQWLQMVEGTDNPEERDMPHNSQWLQMVEGTENPEERDMPEQYFDEENPYGGDLFSRTDLFY 2481
T+APAYLIDLMHDKN E+RKVCDNTLDII+E D +W +I EKFRWHNSQWL+MVE R M + Q+L D E Y E GD+ R DLFY
Sbjct: 632 TQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVES------RQMDESEQYLY---------GDDRIEPYIHE-----GDILERPDLFY 722 The following BLAST results are available for this feature:
BLAST of TCONS_00066103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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