TCONS_00066075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066075
Unique NameTCONS_00066075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066075 ID=TCONS_00066075|Name=TCONS_00066075|organism=Clytia hemisphaerica|type=transcript|length=3873bp
TGTCCTTTCACTTTTGTTCTTTGCTATTTGAATGTAAATCGAAAGTTCAT
CGCATAGTATTGATTTTGATGTTATGGAGATCCACACAAACTCTTCTTCT
TATTTCTTCACCTCTGAATAGGAGGAAAGCTTTCTCATCAATACAGTGAA
GGAATAAATAATAGATAACTTCTCGCTCCTTcgattttgtttcaaaaaaa
aatctctttctcTGATATGATatgtaatgttttgtttttcgatTGCGTGA
CTTACGTGACGAACTTTCAGACATGTATATTTAGAAAAAGGCACTGTCAT
TTTgctttactttttgttttaattaGAGAGCTTCTTTCGTACTCCCTCAT
TCGTAGAGAGGGGGACGTGTTAAAAGAAACATCTCTTCATCTTCAAGGTC
ATTTCGATAGTCACTGCACATGCAATGAATTTTACTTCCTTTCCATTAGA
TTACGCTTAACATTATAATTTGCTGCGATTCCACTGACTGGTGCTTATCA
TGGATCTTCCAACCAATAACATCGACCTCAACAATCGAAGAAAGAAGAAG
TTTACTGGTGGGAACGCTTCAAAACGGCATCGAGATCGAGTTAATGTTGA
ATTCAACAATTTGGCACAGCTTTTACCATTCCCCGAATCAGTGATTGCTA
AACTGGACAAGAGCTCCATCCTACGACTTGCTGTCAGCTATATAcgagca
aaaagttttttcaaagGTGCCTCCATTTTGCGAAGAGAAACGCTTTCCTC
TTTGATCAAGGAAGGAACAGGAGCTGTGACAGAAATATTTTCCAAGGCAC
TTGAGGGGTTTTTGTTGGTACTCACAGAAGATATGAAGGTTTTGTTTGTT
TCTGAATCCGTCAGAGATTACTTGGGTTATTGTCagGCGGGCATTATTCA
CGAGAATTTCTTACAATTCGTCAACCCTTTGGATCATTGCGTTGCCCAGC
AAAATGTCAATTATCAACAAACTGAGgcttCAACATGTTCTGATCAAACA
GATgctataaatgaaaatgaaagtcatGGATCACCACCACCACCTGTCGC
ACGCCGATTTGTATGTCGTATGAAATGCGCCTTCAGTTGTAGCAGTCGTT
TCTATACAGCTTACAGATCTTTCCAATTCAGCGGTCATCTGAGGAAATCC
TCCATTCAAGAAGGCCGTCAGGAGAAAACCGTCAACACACTGGTCGTCTT
TGCCAATCCCCTGAATAACAGTGAAAACAATACAACTGCCTCTGTCCCgc
ggaaaaaggaaaaagaagcaCGCTCTAGCAGTTCCTTTCGTAAAGAAATG
AATACGTATGATACATATACAAGTGGATTTCGAATAGAGCCGACATTGCG
CCCTCACGTCACCCCAATCCTTGTCACAAGCCAAGAACATTCGGATATTT
GTGCCTCCAATGAAATGACGGCAGTGGATGGAAGTTCACCGGCGGAAGCT
GTCAAAGTAGAAGAAATTCCCTCCAAACCGCCTCCCGATCTTCCTCCCCT
CATTAAATCGGAGAGATACTCACCTCTCTTCTTGTCCAAGAACATTTACA
GAGACAGTGCTGCAACTGAACAATTTTACAGTGATCAAAGTGATGACAGT
AAATTTTCACCTGTTTCCAGCCCTGATCTTTTATGGAAACAAAAGCTTTA
TAACGACGAACGTTATTTGCCTTTCAGTAAATCTAGTGATAGAGACgctt
attggttgaaagttgAAAGACGACTTCATGAAGAGCAAAGCTTTATGCAT
CCCTCTGTGTTGGAGGTAGCGAGAAGGGAATCTCGATTGGAACTTCCTCG
AAGAGAAACACGAAGTACGAGTCCGCGTATTAATCATCATTACGCTCCTT
TGGAAGTTTACCCTTCTCAACGAAAACGACATTTCATTGACACTAGTGAC
AACTTTGTTTACAAGAGGAAAAAGTTGGAAGTCGGTGCATTTCAAAGAAG
CAACAAATTTGACATAAATTCACTGTTGGGACTTGATGATACAGCATCGC
ACAATACttcttacaaaaacaaaccatACTAATTGCCCACATTTTGAATA
ttttagatattttaatgCACACGCATGAATGCACAAGGGAGATGAGGTTT
GTAGCTGCGGAAAGACGACTTTTTTGCTGCATGAATGCAAATTTGAAGAA
AGCTGCAAGAACGTGgcaGGAAATAATGGACTTTATCAGAATTTTCATTG
TTGGCCTTTTTGGGGTACTGTTTGAAGTACATGGATATCCAGCACCAGGA
GCAGTAGTCCCAACAGGATTCGAAGCAACAGCCACGGCTAGATTGACCGC
ACCTTTCTTGAAAGCTCGTGAGGTGGAACCAACAGAATCTTTACTGGAAA
GAAGTGAACGTCATGCACCTTTTCCTATGGTTCCAAAAAGACTAATCATT
CCAAAGCTCAAGAAGCATCTACGAAGAAGTCTGATACAGAGGAGGAGTTT
TTCACCGACTTCCAGTACGATGGTGAACAAAGCAAGCGAAGAAGTGGAGC
AATTTGTGTTGGACAAAAACGCGATGAATATGGATGAACAAGTGGATGAT
GATAACGATGAGGAGGACCAAGatgatGTTTCTCCGACAGCCAGTTCACT
TCTATTAAGGCAAGATAGTTCTGCAGTGTCTGAGAAGAAGGCGGTGGTCA
TTCAACAAGCCAACAGTGATGATCAATCTTCAGGAAGTGGAAATCAAGAT
CTCGATACCAATGAAGAAGACGACTCGGACGAAGACCTAGTGAAGCCGAC
GGCGAGTGCCGAACGCAAAGCACACATCCATCCCAAACCTGCTGCTAATG
TGGTTGATGAGCGCAAAAACAACATTGAAAAACAACAGGGTGACGAAATG
GACCGACTAATACAACTTGAATCGGATATCGAGAAAATGGCCAACGATTT
CATCGAACGTAGAGATAACATCCGCCACCCTTCAAAACACGCTTGAACCT
TTTAAGGACATAGAAAACCAAATAAGAGATGAGGGATTGATTCACTATCG
AACGTCGCATTCGCTCATCGAATATAAAGTTGGGttgtcatcaaaacaaa
atagttTTGTGAATGTAAGGCTTTCGAAAGCTAAAAAGCGTCACAATTAT
TGATTGAACATATCAAACGTAAGATAGGTGAAAGGTGGCACTTGAGTGAA
CAGGTCACATGAACTGCTTTAAATATCCCAACACAAATGACCTGTGAAAT
TTTATGTTGAAAAACACTGTCAAGAAGAAGTTCAAAAATTACTTGTTTTT
TGAGGAAGATGCTGGTGAACAGCACTGAAATTGTGATAGGAGCAAACAAA
GATCTTGACCCAGAAACCCGACCCGATATTGGTTGCTTGGTTGACTACCT
GTTAATTGTAATTTAGATGAAACAGTAAAATGTCATTGTTTGTTAAGAAG
AAGCACTTTCCAGTGCAAGAAATTAAAGCACGTGGCTGTATTACCGCCGA
GTATAGTCTGTTCACAAATAACCTGCAGTGGAAACGATAACTATTTTTGA
GAGTCGAACAGCATTAAACTTTGTTTTGTTTGATACCTTTGGATTGAatg
gatatttttgaaaaatcttttctcaGTAAATCTTCCAAGGCTAATATAAT
CATCACTGTAAAAAGTTAAATCCATTTGTGTTTCTTCTTTAGACCATTTT
GAAACTGCGgtaataatcaaatcaaatcaaatttgaaaagtttccTGATT
ggaccaaaaataaaaaataccgtATATATTCTTATAAGAATTGTGTATTT
CCAGTTCATCAACGATATTCTTGACATTTTGATAAGAACCGTATTAAGAT
ATTCTTAACAGTATTCATAGGTTAGAATCCAAACCCAATTTAACATGTAA
TGCATACCTCAAGCAAAAATATG
Run BLAST on NCBI

transcript from alignment at scaffold_45:57213..66455-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066075 ID=TCONS_00066075|Name=TCONS_00066075|organism=Clytia hemisphaerica|type=transcript|length=9243bp|location=Sequence derived from alignment at scaffold_45:57213..66455- (Clytia hemisphaerica)
TGTCCTTTCACTTTTGTTCTTTGCTATTTGAATGTAAATCGAAAGTTCAT
CGCATAGTATTGATTTTGATGTTATGGAGATCCACACAAACTCTTCTTCT
TATTTCTTCACCTCTGAATAGGAGGAAAGCTTTCTCATCAATACAGTGAA
GGAATAAATAATAGATAACTTCTCGCTCCTTCGATTTTGTTTCAAAAAAA
AATCTCTTTCTCTGATATGATATGTAATGTTTTGTTTTTCGATTGCGTGA
CTTACGTGACGAACTTTCAGACATGTATATTTAGAAAAAGGCACTGTCAT
TTTGCTTTACTTTTTGTTTTAATTAGAGAGCTTCTTTCGTACTCCCTCAT
TCGTAGAGAGGGGGACGTGTTAAAAGAAACATCTCTTCATCTTCAAGGTC
ATTTCGATAGTCACTGCACATGCAATGAATTTTACTTCCTTTCCATTAGA
TTACGCTTAACATTATAATTTGCTGCGATTCCACTGACTGGTGCTTATCA
TGGATCTTCCAACCAATAACATCGACCTCAACAATCGAAGAAAGAAGAAG
TTTACTGGGTAACTTGTTTTTTCTTATATTTTTTTCTTGGTGCTTCTTTG
GTCATTGACGGGGGGAGTCTTGTCAACGCTTAATAAGGATAAAGTGGTCA
AATAGTTGAGAAAATATTGCAGACTTAAACTTTAACCGATTTTAAAGAAT
TTCATGTTAGTTCTTCACATGCCACTCTTCTTTCTTTTGATTGGAATTTC
TGTGAAGTAAACCTTTTGCAGGTTGTGCTGAATTTTTAGACCATGGCCAG
GTACCTCAAAACGTTTCACTTTTTTTCAAAATGTCGGTGAATAAACTTTT
GATATCTTTCTTGGTCAATTTGAAGGTGCTGATTCCGAATTTGAATGTTA
CCAAGCTTGTAAACCCGCAGTTTTTGCGTAATTTGCGATTTTTGGGTTTT
CAGGCAAAATTGTAAGATCTAAAAATTCAGATTTCAAATGAAATATAAAA
GTNATTTGAAGGTGCTGATTCGGAATTTGAATGTTACCAAGCTTGAAAAC
CCGCAGTTTTTACGTAATTTGCGATTTTTTGCGTTTTTAGGCAAAACTGT
AAGCCCTGAAAATTCATGATTTTGGGGGGGGTCTTCAAAATCAAAAAAGA
CCTATACCACGTGATAGAGCTCTTCAAACTGAGCAAAAAAATGTATTACA
TCTATTTGATCTCTGGAGTATTGCTTGCAATGAATAGTGAGTAGGAATGC
GTTTTTAAAGGTATTTTAGGATGAATTTCCTCAAACAACATATACTATAT
GCAGAATAGAAAGACTTTGAATTCAGTTGAATGAATTTCCATTAAATGTT
CATTATACATAAATTTTCAGTGGGAACGCTTCAAAACGGCATCGAGATCG
AGTTAATGTTGAATTCAACAATTTGGCACAGCTTTTACCATTCCCCGAAT
CAGTGATTGCTAAACTGGACAAGAGCTCCATCCTACGACTTGCTGTCAGC
TATATACGAGCAAAAAGTTTTTTCAAAGGTAACATTCAAATTTTTATGTT
TTAAGAGTATGTGTTAAGATCCTCATTTCTTTGGTTTGGAAAAATAGGCT
TTTTCTCTGAAAAAAATCTGTAACTAATTTAAAGTCAGTAGAAAAACAGT
TGAGTCGTCATTGATAACTTTTACTGTTACACAAAATCTTGGTATGGTGA
TTTACATAATACTTACGGTTTTCTTGTTAAAAATAAATTGAGAGAATATG
TACCGCTCGAAATGCGTCACGAGATGGCAACAAGAGATGCGTGTTGCATG
AATCTCTATATTTGGGTGCTCATGAAAACATGCAATGACCTTCGTGACAA
AGATTCCATGAGACAATTTCCTGACTTCAATTGATTCACTTTTTCTTTTT
CCAAAGTTATATTTAGAACTCCCTTATCTTTTCAAAACGAAATCTGGAGT
CACGCGAAAGTTTTTACTGTTTTTTCTCACCTCTCGTGCACCCCTTTCAT
AAGAATAACTTCATGTAGAGAGAATATGGTCAATTTGAAACTTATTTACC
CTAACTTTCCTTTAGGTGCCTCCATTTTGCGAAGAGAAACGCTTTCCTCT
TTGATCAAGGAAGGAACAGGAGCTGTGACAGAAATATTTTCCAAGGTACT
CTTCCACTTTCGTTTTTTAAAGTAACATTATTTGCTATCATTACACGAGA
AAATTTCCTCAACGATTTTCCTCATTTGAAAAACTCTGTTTCAAACTTAC
CTATTAGGCACTTGAGGGGTTTTTGTTGGTACTCACAGAAGATATGAAGG
TTTTGTTTGTTTCTGAATCCGTCAGAGATTACTTGGGTTATTGTCAGGTT
TGTTATTTTTTCAAAATCAAAATCATGAAATTCCTTCAATGTCAAAATAT
CTTACATGTGTGTTTTCGTTGAGATAGGAAAATTTAGAAATTTTTCTGAT
ATTTTATCAATGTTTGTGGTTGCCTTGTGTACTCTTTCGTCCTGACCAAG
CTTTGGCGTGCTCTTTTATTATAAGAAAACTTCACTGATGTTTCTTTTTG
CTTAAAATTAATTTTGGATTAGTTCTCACGTGACTTATTACACAAGGAGA
ACTAATTTCTCTGCATAATGTCGTGAGTCTTTGATACAAGGTGATTTTGT
CATGAAATCTATTTTCGTCATATCTGCACGAATAAAGCGTTGGTAAAAAG
AGTCACGATATCGTCCATTTTTTCTTCTACAGGCGGGCATTATTCACGAG
AATTTCTTACAATTCGTCAACCCTTTGGATCATTGCGTTGCCCAGCAAAA
TGTCAATTATCAACAAACTGAGGTTTCATTGTTTTTCACTTTCTCTCGAA
CTAATTTTCTCCCTTATAAATGATTACCGCCCATGCCACCTTCAATCTTA
CTAAGGGCGCCTTTTTATCAAAATTTAACTGCTCGCATTGATGAATTTGA
CAACAGTCTTCCCATAAAGATTTTCAAAGTATTTTAACTATTTTTGCAAT
TACCGGCTGTTTTTTTCTTCTTCAATATTTGAAAATAAAAACGAAATCAG
CGAAACACGATAATTGCTTGTATCTGTAGAAGACTTATGTGTTTCTGATT
AAACCTCCAAATCCCTTAGTTTCAATATTAAATTGGCTTTTGCATGCTTA
ATGTCGAAATTGCATTATTTTCTTGCTGAAAGTCGAAATTTATTGACATC
ACTGCTCGGAAACATAGGAGTAATCTGCATCATTTATATCTAAAGCCGTA
TGATTATTCCTGACATTCCACCAAATCCCCAACTAATAAAATGCAAATTT
CTCGTTGTAGTGACGAGTTTCGTGTATGAGAGATATGTCTATTCTTTTAA
AATCAGTATTCAGTGTCTTTCATGAAGTTGTTTTTTCTCTGTAGCATCAG
TTTTTTTTTTCAGGCTTCAACATGTTCTGATCAAACAGATGCTATAAATG
AAAATGAAAGTCATGGTATGTTTTCTTTTCACTCGGCGTACTTCACTCAG
AAACAAAATATTTCCATTGTTTCCGTGTGCTGCTATTCTATGGTCGGCTA
CCAAGCAACTGACCTTTATCTCGATAAAATTTCGGGAAAGTGCTTCTTAT
AAACAAAATTATGTGAAGATAAGGAACTAATATAGTGAAACGTCAGGTTT
CTTTTTTTGTCCTTTTCTGAGGGAAGGGCTTTAATTTTAACATATTTCTA
TGCCATTCTTTTCAACAGGATCACCACCACCACCTGTCGCACGCCGATTT
GTATGTCGTATGAAATGCGCCTTCAGTTGTAGCAGTCGTTTCTATACAGC
TTACAGATCTTTCCAATTCAGCGGTCATCTGAGGAAATCCTCCATTCAAG
AAGGCCGTCAGGAGAAAACCGTCAACACACTGGTCGTCTTTGCCAATCCC
CTGAATAACAGTGAAAACAATACAACTGCCTCTGTCCCGCGGAAAAAGGA
AAAAGAAGCACGCTCTAGCAGTTCCTTTCGTAAAGAAATGTATGTCCCAA
ATTTCTTCATTATTCAGTATGTTATTGATTTAATGAATGAAATCTGAGAT
AAAAGTTTATCAATGGCTCACTTAGCATACACCTTTTTTCGGTAGGATAC
AGGCCTTCTTGAAGCCATTGAAGTTGTTAAATGTTTTCTCAAGTGCAACT
TGTGGTTCTCTATGTACTTTTTCTCGCTTTTTATTGCGTTATCAGTAAAA
GTTCTTACCTTTTAACTTGGTTGCGATTCTCTTAATCTGTGACCGAAAAA
GCTTTATATTTGCCACTCCCTGAAAAACACTTTTTCACTATTTAGGAATA
CGTATGATACATATACAAGTGGATTTCGAATAGAGCCGACATTGCGCCCT
CACGTCACCCCAATCCTTGTCACAAGCCAAGAACATTCGGATATTTGTGC
CTCCAATGAAATGACGGCAGTGGATGGAAGTTCACCGGCGGAAGCTGTCA
AAGTAGAAGAAATTCCCTCCAAACCGCCTCCCGATCTTCCTCCCCTCATT
AAATCGGAGAGATACTCACCTCTCTTCTTGTCCAAGAACATTTACAGAGA
CAGTGCTGCAACTGAACAATTTTACAGTGATCAAAGTGATGACAGTAAAT
TTTCACCTGTTTCCAGCCCTGATCTTTTATGGAAACAAAAGCTTTATAAC
GACGAACGTTATTTGCCTTTCAGTAAATCTAGTGATAGAGACGCTTATTG
GTTGAAAGTTGAAAGACGACTTCATGAAGAGCAAAGCTTTATGCATCCCT
CTGTGTTGGAGGTAGCGAGAAGGGAATCTCGATTGGAACTTCCTCGAAGA
GAAACACGAAGTACGAGTCCGCGTATTAATCATCATTACGCTCCTTTGGA
AGTTTACCCTTCTCAACGAAAACGACATTTCATTGACACTAGTGACAACT
TTGTTTACAAGAGGAAAAAGTTGGAAGTCGGTGCATTTCAAAGAAGCAAC
AAATTTGACATAAATTCACTGTTGGGACTTGATGATACAGCATCGCACAA
TACTTCTTACAAAAACAAACCATACTAATTGCCCACATTTTGAATAGTTC
GTGGGGATTTACCTAGATATTTTGAGATATTTTACTGTTGTACATTTTAT
TCTTCAAAGGATTATTTGAAAGAAACGAGATTATCCTTCTTTTGTTTAAC
CGGCCATCAGAGTTCGACTTTTTCGGTTTTTCTTTTTTTGTGCAGCAGCG
ATAATCACTTAAATTTGGTACTCACAATTGTTGAAAAAATCTCCTTAGTT
AGAATGCGCCAGTTTGCACTTGTNCAATTGTTGAAAAAATCTCCTTAGTT
ATAGTTAGAATGCGCCAGTTTGCACTTGGCTCTAGAATAAAACCAAGTTT
GCAGAATACTTTTTTTGTAGAGCAATTGTGTTTGCACAAACATGAAGGAA
ACACTATTTTTTTAAGTTTTAGATATTTTAATGCACACGCATGAATGCAC
AAGGGAGATGAGGTTTGTAGCTGCGGAAAGACGACTTTTTTGCTGCATGA
ATGCAAATTTGAAGAAAGCTGCAAGAACGTGGTAAGTCGCTTCAACTTTG
ATTTATCGTCCATCGTTAATTAGATATCTCTCTACCTTACGCTTGCTCGT
GTGACATCATCTCCATTAGCACATTAAAGGCTGTTGTTTTCGTGAATCAA
CACTTCTTGATTCTTCTTTTTTTCAGGCAGGAAATAATGGACTTTATCAG
AATTTTCATTGTTGGCCTTTTTGGGGTACTGTTTGAAGTACATGGTATGA
ATTTTCGATTCTCACTGTTTTTGATGATATCTTATAGCTCATATCATCTT
ACTGAATATATTTTGAATGAAACAGTAGCCCGGGGGGGGTACTAGGGTTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCCCCCCCCCCGG
GAACAGTAGCTTTCTAGTCATTTTTATAAATAAGACATTTTTAGCTTACT
GTGGCCTATAGGGAGGAAGCATTATCTCTCATGATTAGGGTAGGTTGTTC
ACACGCATCATTCTTCTAATTTTATCATTTTCTTCTTCTTTATAGGATAT
CCAGCACCAGGAGCAGTAGTCCCAACAGGATTCGAAGCAACAGCCACGGC
TAGATTGACCGCACCTTTCTTGAAAGCTCGTGAGGTGGAACCAACAGAAT
CTTTACTGGAAAGAAGTGAACGTCATGCACCTTTTCCTATGGTTCCAAAA
AGACTAATCATTCCAAAGCTCAAGAAGCATCTACGAAGAAGTCTGATACA
GGTCGGTAAATTGAAAATTTGTGAACATTTATGAACATTTTTAGCAATAT
TCTGCAACACGCAGGGGGGACGAAAATCTGTACATATTTAGCAACATAAC
TGTTTGGATACAGGTTTAGGAAATTTCGAGTTGAAGAAACTCGGCTGCAT
TATGCTCAAATATTCAATAAAGCCGAAAAAAGGTTGATGTTCATCAAGGA
TGCAAATGACCTTATTTGAAGCCTTTCGTTTTAAGTCAACAACTTCAAGA
GTTTTAAATTTCATTGCACAACCCGTTCAGCACAAAATAAAAAGAATGAA
CTTTTAGTTACCTATCAACAACCCTTATTAACGCGTCTTTTCAAAATCTC
GCTTGTAGAGGAGGAGTTTTTCACCGACTTCCAGTACGATGGTGAACAAA
GCAAGCGAAGAAGTGGAGCAATTTGTGTTGGACAAAAACGCGATGAATAT
GGATGAACAAGTGGATGATGATAACGATGAGGAGGACCAAGGTATTGAGT
TGATTGTAATTCACTGATTTGATTGAAAGTTGTCCAAAGTTGAACAGTTT
TTTGATAGTACAATTAGTTTTTCCTAACGTCCGCATACATTAGAATAATG
TTTTTAAAAGCATTTAATTTTCATTGTTTAGGAAAGAGCCAAGAAAATTT
GTTAATGAAAATGGACAGACTAAACCAACTTTTCTTTTTTCAGATGATGT
TTCTCCGACAGCCAGTTCACTTCTATTAAGGCAAGATAGTTCTGCAGTGT
CTGAGAAGAAGGCGGTGGTCATTCAACAAGCCAACAGTGATGATCAATCT
TCAGGAAGTGGAAATCAAGATCTCGATACCAATGAAGAAGGTGAGATCCT
TCTCTGTTTACCAACCTCCTCGTGGCCTGGAAAACTCGGGATAACAACTT
GCTTTACAAAGAAAATTCAAGCAAAAAATCATCCGATGTAGCTAATATCT
CCGAAAATATCCAGTTATTCACGAGTCCCGATCTAGTCCATGAAACATTC
AGAATATATTTGCGAGTACTTTTATGTGACTTAATTCTATTGAGATGTCA
GATTTGATTTCGATTTGAAGTTTGTTTAAAATGGGGTCTCTGCCAAAGAA
TTTCAAGTACCAATAGTGATTCTTTCTTTCCGTATCTAGACGACTCGGAC
GAAGACCTAGTGAAGCCGACGGCGAGTGCCGAACGCAAAGCACACATCCA
TCCCAAACCTGCTGCTAATGTGGTTGATGAGCGCAAAAACAACATTGAAA
AACAACAGGGTGACGAAATGGACCGACTAATACAACTTGAATCGGATATC
GAGAAAATGGCCAACGATTTCATCGAACGTAGAGATAACATCCGCCACCC
TTCAAAACACGCTTGAACCTTTTAAGGACATAGAAAACCAAATAAGAGAT
GAGGGATTGATTCACTATCGAACGTCGCATTCGCTCATCGAATATAAAGT
TGGGTTGTCATCAAAACAAAATAGTTTTGTGAATGTAAGGCTTTCGAAAG
CTAAAAAGCGTCACAATTATTGATTGAACATATCAAACGTAAGATAGGTG
AAAGGTGGCACTTGAGTGAACAGGTCACATGAACTGCTTTAAATATCCCA
ACACAAATGACCTGTGAAATTTTATGTTGAAAAACACTGTCAAGAAGAAG
TTCAAAAATTACTTGTTTTTTGAGGAAGATGCTGGTGAACAGCACTGAAA
TTGTGATAGGAGCAAACAAAGATCTTGACCCAGAAACCCGACCCGATATT
GGTTGCTTGGTTGACTACCTGTTAATTGTAATTTAGATGAAACAGTAAAA
TGTCATTGTTTGTTAAGAAGAAGCACTTTCCAGTGCAAGAAATTAAAGCA
CGTGGCTGTATTACCGCCGAGTATAGTCTGTTCACAAATAACCTGCAGTG
GAAACGATAACTATTTTTGAGAGTCGAACAGCATTAAACTTTGTTTTGTT
TGATACCTTTGGATTGAATGGATATTTTTGAAAAATCTTTTCTCAGTAAA
TCTTCCAAGGCTAATATAATCATCACTGTAAAAAGTTAAATCCATTTGTG
TTTCTTCTTTAGACCATTTTGAAACTGCGGTAATAATCAAATCAAATCAA
ATTTGAAAAGTTTCCTGATTGGACCAAAAATAAAAAATACCGTATATATT
CTTATAAGAATTGTGTATTTCCAGTTCATCAACGATATTCTTGACATTTT
GATAAGAACCGTATTAAGATATTCTTAACAGTATTCATAGGTTAGAATCC
AAACCCAATTTAACATGTAATGCATACCTCAAGCAAAAATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041371XLOC_041371Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066075-exon-scaffold_45-1575043694:65898..66455TCONS_00066075-exon-scaffold_45-1575043694:65898..66455Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:64928..65085TCONS_00066075-exon-scaffold_45-1575043694:64928..65085Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:64311..64390TCONS_00066075-exon-scaffold_45-1575043694:64311..64390Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:64109..64198TCONS_00066075-exon-scaffold_45-1575043694:64109..64198Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:63634..63723TCONS_00066075-exon-scaffold_45-1575043694:63634..63723Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:62991..63042TCONS_00066075-exon-scaffold_45-1575043694:62991..63042Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:62467..62737TCONS_00066075-exon-scaffold_45-1575043694:62467..62737Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:61410..62160TCONS_00066075-exon-scaffold_45-1575043694:61410..62160Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:60925..61039TCONS_00066075-exon-scaffold_45-1575043694:60925..61039Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:60712..60779TCONS_00066075-exon-scaffold_45-1575043694:60712..60779Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:59505..59710TCONS_00066075-exon-scaffold_45-1575043694:59505..59710Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:59015..59147TCONS_00066075-exon-scaffold_45-1575043694:59015..59147Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:58666..58812TCONS_00066075-exon-scaffold_45-1575043694:58666..58812Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1575043694:57213..58366TCONS_00066075-exon-scaffold_45-1575043694:57213..58366Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:65898..66455TCONS_00066075-exon-scaffold_45-1510915933:65898..66455Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:64928..65085TCONS_00066075-exon-scaffold_45-1510915933:64928..65085Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:64311..64390TCONS_00066075-exon-scaffold_45-1510915933:64311..64390Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:64109..64198TCONS_00066075-exon-scaffold_45-1510915933:64109..64198Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:63634..63723TCONS_00066075-exon-scaffold_45-1510915933:63634..63723Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:62991..63042TCONS_00066075-exon-scaffold_45-1510915933:62991..63042Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:62467..62737TCONS_00066075-exon-scaffold_45-1510915933:62467..62737Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:61410..62160TCONS_00066075-exon-scaffold_45-1510915933:61410..62160Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:60925..61039TCONS_00066075-exon-scaffold_45-1510915933:60925..61039Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:60712..60779TCONS_00066075-exon-scaffold_45-1510915933:60712..60779Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:59505..59710TCONS_00066075-exon-scaffold_45-1510915933:59505..59710Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:59015..59147TCONS_00066075-exon-scaffold_45-1510915933:59015..59147Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:58666..58812TCONS_00066075-exon-scaffold_45-1510915933:58666..58812Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1510915933:57213..58366TCONS_00066075-exon-scaffold_45-1510915933:57213..58366Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:65898..66455TCONS_00066075-exon-scaffold_45-1491911889:65898..66455Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:64928..65085TCONS_00066075-exon-scaffold_45-1491911889:64928..65085Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:64311..64390TCONS_00066075-exon-scaffold_45-1491911889:64311..64390Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:64109..64198TCONS_00066075-exon-scaffold_45-1491911889:64109..64198Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:63634..63723TCONS_00066075-exon-scaffold_45-1491911889:63634..63723Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:62991..63042TCONS_00066075-exon-scaffold_45-1491911889:62991..63042Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:62467..62737TCONS_00066075-exon-scaffold_45-1491911889:62467..62737Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:61410..62160TCONS_00066075-exon-scaffold_45-1491911889:61410..62160Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:60925..61039TCONS_00066075-exon-scaffold_45-1491911889:60925..61039Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:60712..60779TCONS_00066075-exon-scaffold_45-1491911889:60712..60779Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:59505..59710TCONS_00066075-exon-scaffold_45-1491911889:59505..59710Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:59015..59147TCONS_00066075-exon-scaffold_45-1491911889:59015..59147Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:58666..58812TCONS_00066075-exon-scaffold_45-1491911889:58666..58812Clytia hemisphaericaexon
TCONS_00066075-exon-scaffold_45-1491911889:57213..58366TCONS_00066075-exon-scaffold_45-1491911889:57213..58366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:57213..66455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0409224	0.0695285	0.0226929	0.0995471	0.430542	0.419594	0.156699	0.155223	0.236783	0.451259	0.166028	0.184036	0.334096	0.229328	0.623317	0.64575	1.4705	5.50947	1.33325	1.15658	0.133356	0.104261	0.0714415	0.141051	0.0948745	0.172366	0.483017	0.155751	0.141439	0.234737
Blast
[Close]
BLAST of TCONS_00066075 vs. Swiss-Prot (Human)
Match: AHR (Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 5.772e-29
Identity = 81/223 (36.32%), Postives = 117/223 (52.47%), Query Frame = 2 
Query:  563 NASKRHRDRVNVEFNNLAQLLPFPESVIAKLDKSSILRLAVSYIRAKSFFK------------GASILR----RETLSSLIKEGTGAVTEIFSKALEGFLLVLTEDMKVLFVSESVRDYLGYCQAGIIHENFLQFVNPLDHCVAQQNVNYQQTEASTCSDQTDAINENESHGS----------PP---PPVARRFVCRMKCAFSCSSRFYTAYRSFQFSGHLR 1144
            N SKRHRDR+N E + LA LLPFP+ VI KLDK S+LRL+VSY+RAKSFF             G    R    RE L+  ++EG     E   +AL GF+LV+T D  V + S +++DYLG+ Q+ +IH++  + ++  D    Q+ +++     S C++    I E                PP   P + R F+CR++C    SS F     +  F G L+
Sbjct:   34 NPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAKSFFDVALKSSPTERNGGQDNCRAANFREGLN--LQEG-----EFLLQALNGFVLVVTTDALVFYASSTIQDYLGFQQSDVIHQSVYELIHTEDRAEFQRQLHW-ALNPSQCTESGQGIEEATGLPQTVVCYNPDQIPPENSPLMERCFICRLRCLLDNSSGFL----AMNFQGKLK 244
The following BLAST results are available for this feature:
BLAST of TCONS_00066075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AHR5.772e-2936.32Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR P... [more]
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