TCONS_00066073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066073
Unique NameTCONS_00066073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066073 ID=TCONS_00066073|Name=TCONS_00066073|organism=Clytia hemisphaerica|type=transcript|length=1683bp
CGGTGCTTCCCGAACGAGCGATTTCTTCACCAAAAGCACTTCCGAGGAAT
CTTCCGAAATATTCGCCTGCGTAAGAAGTTGTGCGAACCACTCGCTTCCC
AAGATGCATGACGAACACGAGGTTGGTCCAATTGCGGTCCTCTCCAACCA
ACTCGTTGACGTGCGCTGCAAACACTTCGTAAGACATCGACGTATTCTCC
GAAAGAAAGCCAACCAAATCCGTTGTTAATTTCTGTAAGTGAAAAAAGGG
GTTTTCAAACAAGGAGTAAGAAGGAAAAAGGGCATCGACACTGATCCATA
TTCAAACCACTGGCTAATAGCGTATAAAGCACGTGAAGAAAATAAGGCGG
AGTGCATACAAGTGGTCAAACTAACCGTCATTTTGTTTCCGTATTCTTGT
TCAATATCATCACCGATATCAGCAATGGTTCGTGCCGTTTGTGCCAACAC
TTCTTCACTTGGACCTGTATTCGAGCGCGGCCGTTGCTGTTCACTTGGAA
AAGGTATAAAGGTGGCGGCAGCGGCGGATGGACCTTCCGCGACAGTTCGC
TTGTACCGTGAGAAGTCAGACGAGCTTGGTCGTTTTCTTTCGATGGCATG
TTTCAAGGAAGGTGAGGAAGAGGGCGGTGTACATGAAGTGAAAGAAGCGT
TAAAAGAATTGGGCGGTGTTCGCGCTGAATCGGATACTAAGTTTGGCGAA
TAAGCGATACTGTTTATCATGGGTGAGCTACCACTCCTGTTGGGTATGGA
AATCCCATCACTTTGCTTCCGATGGTCGAACGCATTTTGAAACTTCGAGG
CATCATCAAGACCTCGTGAACTGATGTTTGAAGCACTGCCAAAGGAGCCG
GATGAACGAACTGACGACGGCCTCTCACGAACGAAATATTGAACTGAAAC
GAAAAGGAAATTAAAGGATATTATTATCACGGAGAAAAAGCtacttaaaa
acattttagcatcttataaaaaattaaaagtttaccATTCATTGACAATA
ATTGGCGCTTTTAAAATGCTTATCAAAGTTGATCACCGTCATTCTTGGTg
acacaaaaaataaaaagaattttttcatagTTCATGCAAGAGTTTTTCGT
GTCTGACTctgttttaaaaatcatgatTGGTCTGAATGGTAATATTGTAA
TATCAAAGTAAAGTAAAGGAGACAATATACAATTGATGAAAAACCGCTGC
CAACAAAGTCCTCTCTCATTTGCCAGCAAAACTCACCTGGTGCAGCTTCT
AAAAAGTAACACAAAACCTGAAGTGATTTCTCCAGTTTGCTTCGACTTTA
TCACATCGACTAAAAATGTATTATTTTGGTAGAGAAGTACTGTAACAGTT
CCCAGATAACTTACAAATTAAAGCAAATTGACAACTCTCATTCTCTTATC
CTGCAAAGAAAAAACGTGCGAATTTTCTTCACGTTTTTCACATTAACACA
ATCCTTCTGACGCACCTCGAACAACAATTATACAAAATCCGTGACGTCAC
ACAGAccatcaaacaaaaacattaagTTCTCGTTTCAACAAGAAAAACTT
ACAATTCGAATAAAATCTAAACATTTGTGAACTTTGAAAAGTTTATAACA
ACAATAAactacgtttgtttgaaatgtttgtcTTTGGAACAGTTATGAGA
CTTTCCCCTCAGGATAAGTGTGCAAAATGCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_45:50131..53245-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066073 ID=TCONS_00066073|Name=TCONS_00066073|organism=Clytia hemisphaerica|type=transcript|length=3115bp|location=Sequence derived from alignment at scaffold_45:50131..53245- (Clytia hemisphaerica)
CGGTGCTTCCCGAACGAGCGATTTCTTCACCAAAAGCACTTCCGAGGAAT
CTTCCGAAATATTCGCCTGCGTAAGAAGTTGTGCGAACCACTCGCTTCCC
AAGATGCATGACGAACACGAGGTTGGTCCAATTGCGGTCCTCTCCAACCA
ACTCGTTGACGTGCGCTGCAAACACTTCGTAAGACATCGACGTATTCTCC
GAAAGAAAGCCAACCAAATCCGTTGTTAATTTCTGTAAGTGAAAAAAGGG
GTTTTCAAACAAGGAGTAAGAAGGAAAAAGGGCATCGACACTGATCCATA
TTCAAACCACTGGCTAATAGCGTATAAAGCACGTGAAGAAAATAAGGCGG
AGTGCATACAAGTGGTCAAACTAACCGTCATTTTGTTTCCGTATTCTTGT
TCAATATCATCACCGATATCAGCAATGGTTCGTGCCGTTTGTGCCAACAC
TTCTTCACTTGGACCTGTATTCGAGCGCGGCCGTTGCTGTTCACTTGGAA
AAGGTATAAAGGTGGCGGCAGCGGCGGATGGACCTTCCGCGACAGTTCGC
TTGTACCGTGAGAAGTCAGACGAGCTTGGTCGTTTTCTTTCGATGGCATG
TTTCAAGGAAGGTGAGGAAGAGGGCGGTGTACATGAAGTGAAAGAAGCGT
TAAAANAAATCCGCTTGAATTCAAGTCAACTAAAAATCTATATTTTCATT
CTCTCATAGTAAAAATTGTACAAATTGCCTGAATCCAGTCAACTCTTTCT
CTCCATTAACAAAAAAGTTTCAAGGCATATATGTGGGGCATAAAAATATT
TTTGGGTGATGATTCCAATAAATTTTCAAAACGAGGATTTTATACCGGAC
AGCGTCAATGCCAAGTGTCATCTCCACCATTGTAAATCCGCTTTGAACAT
TCTAAAAACACGATAGCCGTCAAACAGCTGACCCTTCTTCTTCCCCTGCA
GAGGATTTCTTTTTCGAATGCTCGCGAACATATCGATCCTATTACAAAAA
TTATCCATATAAAAGATTTTTCAATTCATTACAGTTTGATACTCCAATGG
ATTCTAAAAAAGCTGATTTTTATTTATGATCTTTGAAAATCAGTCCTCTT
TCACAGCAAAACGGCCAGCTTATGCTGTTTGATTTCAATAATCGTTAAGC
ATTTAATAGACGATATCGGCTTAACGAAATTCTCCCCGAATGATTACCCA
TGATGCATTGCGCAAAAAAATTCACGGACAATATTAACTTACTGAATTTT
TTGCGCAATGCATCATGGGTAATCATTCGGGGAGAATTTCGTTAAGCCGA
TATCGTCTATTAAATGCTTAACGATTAGACTGCAAACAATCAAAATACCA
TACCTTATTTCAAATTTATTTATTCTTTTTTCTCGTTATAAAAGAAGTTA
AGGGTGAGTAATGGAAAGATAACAACTACTTACGGTGCTTCCCGAACGAG
CGATTTCTTCACCAAAAGCACTTCCGAGGAATCTTCCGAAATATTCGCCT
GCGTAAGAAGTTGTGCGAACCACTCGCTTCCCAAGATGCATGACGAACAC
GAGGTTGGTCCAATTGCGGTCCTCTCCAACCAACTCGTTGACGTGCGCTG
CAAACACTTCGTAAGACATCGACGTATTCTCCGAAAGAAAGCCAACCAAA
TCCGTTGTTAATTTCTGTAAGTGAAAAAAGGGGTTTTCAAACAAGGAGTA
AGAAGGAAAAAGGGCATCGACACTGATCCATATTCAAACCACTGGCTAAT
AGCGTATAAAGCACGTGAAGAAAATAAGGCGGAGTGCATACAAGTGGTCA
AACTAACCGTCATTTTGTTTCCGTATTCTTGTTCAATATCATCACCGATA
TCAGCAATGGTTCGTGCCGTTTGTGCCAACACTTCTTCACTTGGACCTGT
ATTCGAGCGCGGCCGTTGCTGTTCACTTGGAAAAGGTATAAAGGTGGCGG
CAGCGGCGGATGGACCTTCCGCGACAGTTCGCTTGTACCGTGAGAAGTCA
GACGAGCTTGGTCGTTTTCTTTCGATGGCATGTTTCAAGGAAGGTGATGA
AGAGGGCGGTGTACATGAAGTGAAAGAAGCGTTAAAAGAATTGGGCGGTG
TTCGCGCTGAATCGGATACTAAGTTTGGCGAATAAGCGATACTGTTTATC
ATGGGTGAGCTACCACTCCTGTTGGGTATGGAAATCCCATCACTTTGCTT
CCGATGGTCGAACGCATTTTGAAACTTCGAGGCATCATCAAGACCTCGTG
AACTGATGTTTGAAGCACTGCCAAAGGAGCCGGATGAACGAACTGACGAC
GGCCTCTCACGAACGAAATATTGAACTGAAACGAAAAGGAAATTAAAGGA
TATTATTATCACGGAGAAAAAGCTACTTAAAAACATTTTAGCATCTTATA
AAAAATTAAAAGTTTACCATTCATTGACAATAATTGGCGCTTTTAAAATG
CTTATCAAAGTTGATCACCGTCATTCTTGGTGACACAAAAAATAAAAAGA
ATTTTTTCATAGTTCATGCAAGAGTTTTTCGTGTCTGACTCTGTTTTAAA
AATCATGATTGGTCTGAATGGTAATATTGTAATATCAAAGTAAAGTAAAG
GAGACAATATACAATTGATGAAAAACCGCTGCCAACAAAGTCCTCTCTCA
TTTGCCAGCAAAACTCACCTGGTGCAGCTTCTAAAAAGTAACACAAAACC
TGAAGTGATTTCTCCAGTTTGCTTCGACTTTATCACATCGACTAAAAATG
TATTATTTTGGTAGAGAAGTACTGTAACAGTTCCCAGATAACTTACAAAT
TAAAGCAAATTGACAACTCTCATTCTCTTATCCTGCAAAGAAAAAACGTG
CGAATTTTCTTCACGTTTTTCACATTAACACAATCCTTCTGACGCACCTC
GAACAACAATTATACAAAATCCGTGACGTCACACAGACCATCAAACAAAA
ACATTAAGTTCTCGTTTCAACAAGAAAAACTTACAATTCGAATAAAATCT
AAACATTTGTGAACTTTGAAAAGTTTATAACAACAATAAACTACGTTTGT
TTGAAATGTTTGTCTTTGGAACAGTTATGAGACTTTCCCCTCAGGATAAG
TGTGCAAAATGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041370XLOC_041370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066073-exon-scaffold_45-1575043694:52614..53245TCONS_00066073-exon-scaffold_45-1575043694:52614..53245Clytia hemisphaericaexon
TCONS_00066073-exon-scaffold_45-1575043694:50131..51181TCONS_00066073-exon-scaffold_45-1575043694:50131..51181Clytia hemisphaericaexon
TCONS_00066073-exon-scaffold_45-1510915933:52614..53245TCONS_00066073-exon-scaffold_45-1510915933:52614..53245Clytia hemisphaericaexon
TCONS_00066073-exon-scaffold_45-1510915933:50131..51181TCONS_00066073-exon-scaffold_45-1510915933:50131..51181Clytia hemisphaericaexon
TCONS_00066073-exon-scaffold_45-1491911889:52614..53245TCONS_00066073-exon-scaffold_45-1491911889:52614..53245Clytia hemisphaericaexon
TCONS_00066073-exon-scaffold_45-1491911889:50131..51181TCONS_00066073-exon-scaffold_45-1491911889:50131..51181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:50131..53245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.169424	0.13826	0.627304	1.2785	1.20855	0.857838	0.775929	0.60817	0.12417	0.258457	0.250044	0.281179	0.39571	0.286667	0.360716	1.61414	0.226434	1.5087	1.52955	0.655829	0.180385	0.337532	0.287804	0.194977	0.318096	0.25267	2.01397	0.708081	3.81659	2.18736
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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