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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066060 ID=TCONS_00066060|Name=TCONS_00066060|organism=Clytia hemisphaerica|type=transcript|length=917bp
GAGAGTTGTCAATTTGCTTTAATTTGTAAGTTATCTGGGAACTGTTACAG
TACTTCTCTACCAAAATAATACATTTTTAGTCGATGTGATAAAGTCGAAG
CAAACTGGAGAAATCACTTCAGGTTTTGTGTTACTTTTTAGAAGCTGCAC
CAGTTCAATATTTCGTTCGTGAGAGGCCGTCGTCAGTTCGTTCATCCGGC
TCCTTTGGCAGTGCTTCAAACATCAGTTCACGAGGTCTTGATGATGCCTC
GAAGTTTCAAAATGCGTTCGACCATCGGAAGCAAAGTGATGGGATTTCCA
TACCCAACAGGAGTGGTAGCTCACCCATGATAAACAGTATCGCTTATTCG
CCAAACTTAGTATCCGATTCAGCGCGAACACCGCCCAATTCTTTTAACGC
TTCTTTCACTTCATGTACACCGCCCTCTTCATCACCTTCCTTGAAACATG
CCATCGAAAGAAAACGACCAAGCTCGTCTGACTTCTCACGGTACAAGCGA
ACTGTCGCGGAAGGTCCATCCGCCGCTGCCGCCACCTTTATACCTTTTCC
AAGTGAACAGCAACGGCCGCGCTCGAATACAGGTCCAAGTGAAGAAGTGT
TGGCACAAACGGCACGAACCATTGCTGATATCGGTGATGATATTGAACAA
GAATACGGAAACAAAATGACGAAATTAACAACGGATTTGGTTGGCTTTCT
TTCGGAGAATACGTCGATGTCTTACGAAGTGTTTGCAGCGCACGTCAACG
AGTTGGTTGGAGAGGACCGCAATTGGACCAACCTCGTGTTCGTCATGCAT
CTTGGGAAGCGAGTGGTTCGCACAACTTCTTACGCAGGCGAATATTTCGG
AAGATTCCTCGGAAGTGCTTTTGGTGAAGAAATCGCTCGTTCGGGAAGCA
CCGTAAGTAGTTGTTAT Run BLAST on NCBI transcript from alignment at scaffold_45:50425..53259+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066060 ID=TCONS_00066060|Name=TCONS_00066060|organism=Clytia hemisphaerica|type=transcript|length=2835bp|location=Sequence derived from alignment at scaffold_45:50425..53259+ (Clytia hemisphaerica)
GAGAGTTGTCAATTTGCTTTAATTTGTAAGTTATCTGGGAACTGTTACAG
TACTTCTCTACCAAAATAATACATTTTTAGTCGATGTGATAAAGTCGAAG
CAAACTGGAGAAATCACTTCAGGTTTTGTGTTACTTTTTAGAAGCTGCAC
CAGGTGAGTTTTGCTGGCAAATGAGAGAGGACTTTGTTGGCAGCGGTTTT
TCATCAATTGTATATTGTCTCCTTTACTTTACTTTGATATTACAATATTA
CCATTCAGACCAatcatgatttttaaaacagAGTCAGACACGAAAAACTC
TTGCATGAActatgaaaaaattctttttattttttgtgtcACCAAGAATG
ACGGTGATCAACTTTGATAAGCATTTTAAAAGCGCCAATTATTGTCAATG
AATggtaaacttttaattttttataagatgctaaaatgtttttaagtaGC
TTTTTCTCCGTGATAATAATATCCTTTAATTTCCTTTTCGTTTCAGTTCA
ATATTTCGTTCGTGAGAGGCCGTCGTCAGTTCGTTCATCCGGCTCCTTTG
GCAGTGCTTCAAACATCAGTTCACGAGGTCTTGATGATGCCTCGAAGTTT
CAAAATGCGTTCGACCATCGGAAGCAAAGTGATGGGATTTCCATACCCAA
CAGGAGTGGTAGCTCACCCATGATAAACAGTATCGCTTATTCGCCAAACT
TAGTATCCGATTCAGCGCGAACACCGCCCAATTCTTTTAACGCTTCTTTC
ACTTCATGTACACCGCCCTCTTCATCACCTTCCTTGAAACATGCCATCGA
AAGAAAACGACCAAGCTCGTCTGACTTCTCACGGTACAAGCGAACTGTCG
CGGAAGGTCCATCCGCCGCTGCCGCCACCTTTATACCTTTTCCAAGTGAA
CAGCAACGGCCGCGCTCGAATACAGGTCCAAGTGAAGAAGTGTTGGCACA
AACGGCACGAACCATTGCTGATATCGGTGATGATATTGAACAAGAATACG
GAAACAAAATGACGGTTAGTTTGACCACTTGTATGCACTCCGCCTTATTT
TCTTCACGTGCTTTATACGCTATTAGCCAGTGGTTTGAATATGGATCAGT
GTCGATGCCCTTTTTCCTTCTTACTCCTTGTTTGAAAACCCCTTTTTTCA
CTTACAGAAATTAACAACGGATTTGGTTGGCTTTCTTTCGGAGAATACGT
CGATGTCTTACGAAGTGTTTGCAGCGCACGTCAACGAGTTGGTTGGAGAG
GACCGCAATTGGACCAACCTCGTGTTCGTCATGCATCTTGGGAAGCGAGT
GGTTCGCACAACTTCTTACGCAGGCGAATATTTCGGAAGATTCCTCGGAA
GTGCTTTTGGTGAAGAAATCGCTCGTTCGGGAAGCACCGTAAGTAGTTGT
TATCTTTCCATTACTCACCCTTAACTTCTTTTATAAcgagaaaaaagaat
aaataaatttgaaataaggTATGGTATTTTGATTGTTTGCAGTCTAATCG
TTAAGCatttaatagacgatatcggcttaacgaaattctccccgaatgat
tacccatgatgcattgcgcaaaaaattcagtaagttaatattgtccgtga
atttttttgcgcaatgcatcatgggtaatcattcggggagaatttcgtta
agccgatatcgtctattaaatGCTTAACGATTATTGAAATCAAACAGCAT
AAGCTGGCcgttttgctgtgaaagaggaCTGATTTTCAAAGATCATAAat
aaaaatcagcttttttagAATCCATTGGAGTATCAAACTGtaatgaattg
aaaaatcttttatatGGATAATTTTTGTAATAGGATCGATATGTTCGCGA
GcattcgaaaaagaaatcctCTGCAGGGGAAGAAGAAGGGTCAGCTGTTT
GACGGCTATCGTGTTTTTAGAATGTTCAAAGCGGATTTACAATGGTGGAG
ATGACACTTGGCATTGACGCTGTCCGGTATAAAATCCtcgttttgaaaat
ttattggaATCATcacccaaaaatatttttatgcccCACATATAtgcctt
gaaacttttttgttaaTGGAGAGAAAGAGTTGACTGGATTCAGGCAATTT
GTACAATTTTTACTATGAGAGAATGAAAATATAGATTTTTAGTTGACTTG
AATTCAAGCGGATTTNTTTTAACGCTTCTTTCACTTCATGTACACCGCCC
TCTTCCTCACCTTCCTTGAAACATGCCATCGAAAGAAAACGACCAAGCTC
GTCTGACTTCTCACGGTACAAGCGAACTGTCGCGGAAGGTCCATCCGCCG
CTGCCGCCACCTTTATACCTTTTCCAAGTGAACAGCAACGGCCGCGCTCG
AATACAGGTCCAAGTGAAGAAGTGTTGGCACAAACGGCACGAACCATTGC
TGATATCGGTGATGATATTGAACAAGAATACGGAAACAAAATGACGGTTA
GTTTGACCACTTGTATGCACTCCGCCTTATTTTCTTCACGTGCTTTATAC
GCTATTAGCCAGTGGTTTGAATATGGATCAGTGTCGATGCCCTTTTTCCT
TCTTACTCCTTGTTTGAAAACCCCTTTTTTCACTTACAGAAATTAACAAC
GGATTTGGTTGGCTTTCTTTCGGAGAATACGTCGATGTCTTACGAAGTGT
TTGCAGCGCACGTCAACGAGTTGGTTGGAGAGGACCGCAATTGGACCAAC
CTCGTGTTCGTCATGCATCTTGGGAAGCGAGTGGTTCGCACAACTTCTTA
CGCAGGCGAATATTTCGGAAGATTCCTCGGAAGTGCTTTTGGTGAAGAAA
TCGCTCGTTCGGGAAGCACCGTAAGTAGTTGTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066060-exon-scaffold_45-1491911889:50425..50577 | TCONS_00066060-exon-scaffold_45-1491911889:50425..50577 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1510915933:50425..50577 | TCONS_00066060-exon-scaffold_45-1510915933:50425..50577 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1575043694:50425..50577 | TCONS_00066060-exon-scaffold_45-1575043694:50425..50577 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1491911889:50921..51438 | TCONS_00066060-exon-scaffold_45-1491911889:50921..51438 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1510915933:50921..51438 | TCONS_00066060-exon-scaffold_45-1510915933:50921..51438 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1575043694:50921..51438 | TCONS_00066060-exon-scaffold_45-1575043694:50921..51438 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1491911889:53014..53259 | TCONS_00066060-exon-scaffold_45-1491911889:53014..53259 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1510915933:53014..53259 | TCONS_00066060-exon-scaffold_45-1510915933:53014..53259 | Clytia hemisphaerica | exon |
| TCONS_00066060-exon-scaffold_45-1575043694:53014..53259 | TCONS_00066060-exon-scaffold_45-1575043694:53014..53259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_45 | supercontig | scaffold_45:50425..53259 + |
Blast
The following BLAST results are available for this feature:
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