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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066038 ID=TCONS_00066038|Name=TCONS_00066038|organism=Clytia hemisphaerica|type=transcript|length=494bp
AAACAATTTGCtagttttggcgcgaaaaagccacaacaaaacagaaaaac
tcgaaacgaaggaagacaATCATTCCAACCACTGCTGCATTCTACAGCAG
AAAACTGCTGCTTGAAAGAATACATGCACAAACAGTTTTACATATTCCAT
TCCCTCATTAGAAGACTAACAGTATGGCAGACTCTGTAGGCTCACGAAGA
TCAAGCCGCCAGAGTTCAGAAAGGAAAAGTTCACGAAAAAAGGCACTTGA
AAAGATCAAGAAAAACAGAGAAACTGGAGAAAAGATTGAGTATGAGtttg
aagatgaaaaagacaTTTATGATGTCGTTGATGAGGATAAATATGCTAAA
ATTGTTCAAGAACGACAAGAAGAAGATTTTATTGTTGATGATGATGGAAC
AGGGTATGCAGATGATGgtagagaaatttttgatgatgatCCAAATGAAA
TTCCTGATAAAGAATTTGAGAAACtcaagaaaacgaaaaaagAG Run BLAST on NCBI protein sequence of TCONS_00066038-protein >TCONS_00066038-protein ID=TCONS_00066038-protein|Name=TCONS_00066038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MADSVGSRRSSRQSSERKSSRKKALEKIKKNRETGEKIEYEFEDEKDIYD
VVDEDKYAKIVQERQEEDFIVDDDGTGYADDGREIFDDDPNEIPDKEFEK
LKKTKKE Run BLAST on NCBI transcript from alignment at scaffold_449:45529..50441+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066038 ID=TCONS_00066038|Name=TCONS_00066038|organism=Clytia hemisphaerica|type=transcript|length=4913bp|location=Sequence derived from alignment at scaffold_449:45529..50441+ (Clytia hemisphaerica)
AAACAATTTGCtagttttggcgcgaaaaagccacaacaaaacagaaaaac
tcgaaacgaaggaagacaATCATTCCAACCACTGCTGCATTCTACAGCAG
AAAACTGCTGCTTGAAAGAATACATGCACAAACAGTTTTACATATTCCAT
TCCCTCATTAGAAGACTAACAGTATGGCAGACTCTGTAGGTAAGATACAC
ATTCATTTCAATAAGACCAATTCTGTAGTACCACCGTGCGTGGTGAAGTC
GGGTAAAAAACCTGCATAGGACCCTCCGTGACGCCTGTACAGCCCGTACT
TGCATCAGCATCAGCCAGTTGgtgtggagggaaacttgcatcatagtcat
caaatgcctgaccatttagagcagcaaaatttcaaaacaaacgaacacgc
agctccgctcgctgCTCTACTCAGGACcatgccgacgcaccggacttaac
gaacaccggacacgcgaaagtccggtgtaaaatgagaattttttttacca
ccggacaatttctacaccggacttaaggaagtcggatgtccggtgtcaga
gaatgatatttttcccactggacaatcaaaacaccgacatgaccagtccg
gtgcgtcttaattttttgtttcataaatgtccggcgttcaaaattccctg
tatgcaacaccggactgacaccggacttattgtgtccggtgtagcgaaag
gatactttttgccaccggacaaatacaccggacagtccggtgcgtcggca
gggtccgcTCTACTCTACCATGATGTTagaatcttttatttttttatttg
ctgCAGTGTTAGGGCAGTAtggacctaactcttcatacaaaaattacggg
aaacgcatgtttggactttgtaccctatgctgcacgcaagcacttaagcc
aaagtcccgcaaaggcgggacaaaaatcagttttttgaagtttgcaaaaa
aatgccacatacaagaagatctttcaaattcagtatgtgaatagagcggt
aaaaaatacaacttttctatttttctttttatttgcaaaagttctaagaa
tgaaaataaagggataatgataattgcatactacagttaggaacatttgg
cgagttcctgtacgcagccgcaatcaaaaaaatcataacgtcactcaata
aaaaatggcgttcgtgtcttttcgcactttttttaGCCTAGACGATGTAG
CAAACATAGTAAGTgtaagcacactgtgcttttaattggctgacaatttc
ttttgcgtcggaaaaactttttcaaactttcagcaatgattgatcAAACT
GTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNacaatgaaaattatccagcgcattttttatcttct
taccttcttcatcttcaatgaagaactcaaagtttactgaaagtaagcac
ataagatattcttatgattaatgatattcatttaaacacgcttcgttatg
cgctgcggtggagtgcattacgtaactcgcgcggcaactaactcgccttc
tgttggaagatcatattgggcgttttggtgTTACCACCTTGACGCAGCga
gcgcctttgtctttccgcaactctttccaccattttagatggccttaaca
atagatccaaaagggcgccataatcttggaagataattNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgtgttttcgatggaaaatggtaagaaacttaagtttacaagtg
tcatttagtttttgctggcttatagaatggcaggatcctggatggtttcc
ctaactgtacTATCCAttgcacgtgcgtttggtttgggaacgcgaaacac
gaatgcaaactacccatgtctaaacttttcaatatatctccagaactaac
agattttttgaaattctgtaaagaggtctaagttcctgaattgttttact
atgttctgtgaaaaaatcataacagttacaacctttcgtccaaagcaaaa
gacgtgcttttctcgctgCCATCCTGTTTtcgaatgagaattctagagaa
tcCATTCGTTTTCCAGCTCCCGcagtcttttttcatccaatcagatcgcg
cgatttcactttcgctttctctagtccaataagactgcgggatttgagtc
atgtgacatctctattaaaaaacccgtgcgaaatacagggggtcacaaaa
tagaaatacaaggggtcacactactggctacaggaactgaaagcaagcaa
ttaaggccaatatttttggtttttctgaaggacaaaaggtataggaagNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNgcttcgcgtactcttcgctagAGAAAATGatttgacagattgaag
tttttctcCCGCGCGGGCGTTCTGCGCACAAAATGAATTCCATTATTTGT
GATGGTGCATGCGTTTAGTTTTTAACGTTGGGTGCTGTTTCGTTGAAGGT
GGAGTGCCCACATTTTTGTTACAAATAGCAAAATTACAATGTATTTTAAG
CCAAACATCTGAATTTTAATGATTTAATTTTGCCATTCATCAATCCTATG
CGATTTCACAAGTTTTATTTTGGCAAACAAAGCAAAAACGCAAAATTAAA
TCTTCCAAAAAATTAGTCAGATTAAAGTAACTGAGTTCAAATTAGTGTGT
AAAAATAAGTATTTGCCCATAGACAAGATTTATTGACGCTTGACTTTTTC
TAGTTACAGAAAGTTCTAAATATTTTACTTCAAACGTCAAACCTCAATTT
TTACCCTCCTCATTTTATCCTCACACTAAATTAGTCAACCACGCCCTTAC
ATTACCTACCTGCTCACTGTTTTGGATTGTTTTGCATTATAAACCCTAGA
CTTGCATAGTGTATAAAGTTAGTGtacaaagaaatttatttttttacata
gTGGTAACATAGACACAAGCCTGTTTCTATTCCCTAAAATTTGCCCGGTA
TTGTCAGGATTTGTGACAGGAGTTGTATatgtcaaaaaagaattttttta
tatttgaaaagaaaatgatttgaGCTTTCAAAGCTTTTAACAGCTTTACT
TCTTGCAGACattaaaaaaacaagttttaattcaaaatttttatatataa
ccTGGGCAAGCCCTGGAAGGAAATTAGAAGTATTTTACTATTGATGAAAT
CTGATGAAATACATAtgcaattttttatctttagGCTCACGAAGATCAAG
CCGCCAGAGTTCAGAAAGGAAAAGTTCACGAAAAAAGGCACTTGAAAAGA
TCAAGTATAAATACATTTTTGTCCTATTTTACatcggtttttttttaaaa
cattaaatGAATATAAGTGTTGTGTCTCTGCACCTCgacattttgtcaaa
aataccAAATATCCTATCTTTATTTTACCCTGCCCACCTAGAAGCTCAAA
CTACCCTATTTTAATGGGAAAAAGTCCTATCCTCCCTATGAAACCCTTCA
TGAAAAGTCCCCCCCCTAATAAGGAAGGGGGAGGGGGGCTTACACTATAT
AATATCTGAAAATACTGACAAAGCTAAAGGTGTAAACACCCTATTTtata
gtttttagtttttaaggGACAAAATACCCTGTGTTTCTCTACATTTTCTA
ATActagaaattttcttttattctttactaTAGGAAAAACAGAGAAACTG
GAGAAAAGATTGAGTATGAGGTAATCTAGAATATAAGCCCTATCTTGACA
GCTTCTTTTTAAATACTTCATACACAGTTTAAAAGGATAAAAAGATAGTT
GATATTTATATGTATATCAACAATATCACTTTAAAATTGTGGTTGAAAAA
CACTCGATATCTCCATCAAATTTAAGAGGAAAAAGTTTGCAGCATTTCTT
GAGAATatttaatgtttttgtttcagtttgaagatgaaaaagacaTTTAT
GATGTCGTTGATGAGGATAAATATGCTAAAATTGTTCAAGAACGACAAGA
AGAAGATTTTATTGTTGATGATGGTAAGATatgattaattatttttttga
tggtTGATCTTGATCATTCATTATGTGCATTTTGTCtgcaaataaataaa
aagtggGCAAAAAATTAAGGGAGGTATCTTAGAAAATGACGAAATCTTTT
GTGATGTTGAATCATCAAGACTACCTGTCTTTTAAATAGCTCTACTGGCT
TTTCAAGATGATTATTTGAGCAACTCAATAAAGTTTTCAATTTCCCTAAT
TTCAGATGGAACAGGGTATGCAGATGATGgtagagaaatttttgatgatg
atCCAAATGAAATTCCTGATAAAGGTAAAAGTAATTTTTGGTGTGCTATT
TTACGttatttttaaagataaattagtgaacaaaattaaagtttatcttt
atttttttaaatcatattgacaactttgaaaaaaaacttatttgatAAGA
AtctttattgaattttttttctaatttataGAATTTGAGAAACtcaagaa
aacgaaaaaagAG Coding sequence (CDS) from alignment at scaffold_449:45529..50441+ >TCONS_00066038 ID=TCONS_00066038|Name=TCONS_00066038|organism=Clytia hemisphaerica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_449:45529..50441+ (Clytia hemisphaerica)
ATGGCAGACTCTGTAGGCTCACGAAGATCAAGCCGCCAGAGTTCAGAAAG
GAAAAGTTCACGAAAAAAGGCACTTGAAAAGATCAAGAAAAACAGAGAAA
CTGGAGAAAAGATTGAGTATGAGtttgaagatgaaaaagacaTTTATGAT
GTCGTTGATGAGGATAAATATGCTAAAATTGTTCAAGAACGACAAGAAGA
AGATTTTATTGTTGATGATGATGGAACAGGGTATGCAGATGATGgtagag
aaatttttgatgatgatCCAAATGAAATTCCTGATAAAGAATTTGAGAAA
CtcaagaaaacgaaaaaagAGATGGCAGACTCTGTAGGCTCACGAAGATC
AAGCCGCCAGAGTTCAGAAAGGAAAAGTTCACGAAAAAAGGCACTTGAAA
AGATCAAGAAAAACAGAGAAACTGGAGAAAAGATTGAGTATGAGtttgaa
gatgaaaaagacaTTTATGATGTCGTTGATGAGGATAAATATGCTAAAAT
TGTTCAAGAACGACAAGAAGAAGATTTTATTGTTGATGATGATGGAACAG
GGTATGCAGATGATGgtagagaaatttttgatgatgatCCAAATGAAATT
CCTGATAAAGAATTTGAGAAACtcaagaaaacgaaaaaagAGATGGCAGA
CTCTGTAGGCTCACGAAGATCAAGCCGCCAGAGTTCAGAAAGGAAAAGTT
CACGAAAAAAGGCACTTGAAAAGATCAAGAAAAACAGAGAAACTGGAGAA
AAGATTGAGTATGAGtttgaagatgaaaaagacaTTTATGATGTCGTTGA
TGAGGATAAATATGCTAAAATTGTTCAAGAACGACAAGAAGAAGATTTTA
TTGTTGATGATGATGGAACAGGGTATGCAGATGATGgtagagaaattttt
gatgatgatCCAAATGAAATTCCTGATAAAGAATTTGAGAAACtcaagaa
aacgaaaaaagAGATGGCAGACTCTGTAGGCTCACGAAGATCAAGCCGCC
AGAGTTCAGAAAGGAAAAGTTCACGAAAAAAGGCACTTGAAAAGATCAAG
AAAAACAGAGAAACTGGAGAAAAGATTGAGTATGAGtttgaagatgaaaa
agacaTTTATGATGTCGTTGATGAGGATAAATATGCTAAAATTGTTCAAG
AACGACAAGAAGAAGATTTTATTGTTGATGATGATGGAACAGGGTATGCA
GATGATGgtagagaaatttttgatgatgatCCAAATGAAATTCCTGATAA
AGAATTTGAGAAACtcaagaaaacgaaaaaagAGATGGCAGACTCTGTAG
GCTCACGAAGATCAAGCCGCCAGAGTTCAGAAAGGAAAAGTTCACGAAAA
AAGGCACTTGAAAAGATCAAGAAAAACAGAGAAACTGGAGAAAAGATTGA
GTATGAGtttgaagatgaaaaagacaTTTATGATGTCGTTGATGAGGATA
AATATGCTAAAATTGTTCAAGAACGACAAGAAGAAGATTTTATTGTTGAT
GATGATGGAACAGGGTATGCAGATGATGgtagagaaatttttgatgatga
tCCAAATGAAATTCCTGATAAAGAATTTGAGAAACtcaagaaaacgaaaa
aagAGATGGCAGACTCTGTAGGCTCACGAAGATCAAGCCGCCAGAGTTCA
GAAAGGAAAAGTTCACGAAAAAAGGCACTTGAAAAGATCAAGAAAAACAG
AGAAACTGGAGAAAAGATTGAGTATGAGtttgaagatgaaaaagacaTTT
ATGATGTCGTTGATGAGGATAAATATGCTAAAATTGTTCAAGAACGACAA
GAAGAAGATTTTATTGTTGATGATGATGGAACAGGGTATGCAGATGATGg
tagagaaatttttgatgatgatCCAAATGAAATTCCTGATAAAGAATTTG
AGAAACtcaagaaaacgaaaaaagAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066038-exon-scaffold_449-1491911889:45529..45717 | TCONS_00066038-exon-scaffold_449-1491911889:45529..45717 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1510915933:45529..45717 | TCONS_00066038-exon-scaffold_449-1510915933:45529..45717 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1575043694:45529..45717 | TCONS_00066038-exon-scaffold_449-1575043694:45529..45717 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1491911889:49163..49232 | TCONS_00066038-exon-scaffold_449-1491911889:49163..49232 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1510915933:49163..49232 | TCONS_00066038-exon-scaffold_449-1510915933:49163..49232 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1575043694:49163..49232 | TCONS_00066038-exon-scaffold_449-1575043694:49163..49232 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1491911889:49612..49648 | TCONS_00066038-exon-scaffold_449-1491911889:49612..49648 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1510915933:49612..49648 | TCONS_00066038-exon-scaffold_449-1510915933:49612..49648 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1575043694:49612..49648 | TCONS_00066038-exon-scaffold_449-1575043694:49612..49648 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1491911889:49855..49951 | TCONS_00066038-exon-scaffold_449-1491911889:49855..49951 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1510915933:49855..49951 | TCONS_00066038-exon-scaffold_449-1510915933:49855..49951 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1575043694:49855..49951 | TCONS_00066038-exon-scaffold_449-1575043694:49855..49951 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1491911889:50184..50252 | TCONS_00066038-exon-scaffold_449-1491911889:50184..50252 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1510915933:50184..50252 | TCONS_00066038-exon-scaffold_449-1510915933:50184..50252 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1575043694:50184..50252 | TCONS_00066038-exon-scaffold_449-1575043694:50184..50252 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1491911889:50410..50441 | TCONS_00066038-exon-scaffold_449-1491911889:50410..50441 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1510915933:50410..50441 | TCONS_00066038-exon-scaffold_449-1510915933:50410..50441 | Clytia hemisphaerica | exon |
| TCONS_00066038-exon-scaffold_449-1575043694:50410..50441 | TCONS_00066038-exon-scaffold_449-1575043694:50410..50441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_449 | supercontig | scaffold_449:45529..50441 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024647 | DNA_pol_a_cat_su_N |
Blast
The following BLAST results are available for this feature:
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