|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066033 ID=TCONS_00066033|Name=TCONS_00066033|organism=Clytia hemisphaerica|type=transcript|length=805bp
TGAAGAAACTGCCCCAGGCCTGCTGTCATTTGCTGCTTTCAGTCAAGTAA
TTGATAAGAATGGCTGCTGGCCTTAGCGCTTATCGTGACCAACATTTCAA
AGGTACTCGTAATGAACTTGAAAGGAAGCTTGAAGGGAGCAATACATTAT
ATGTTGgtaatttgtcatttttcactACCGAAGAACAAATTTATGAATTA
TTTTCGAAATCAGGTGATGTTAAAAAGATTGTAATGGGCCTTGATCGTGT
TAGGAAAACCCCATGTGGATTTTGTTTTGTGGAATATTACTTCCGCAGTG
GGGCTGAAGATTCGGTCCGATATGTTAATGGAACTAGACTGGATGGTCGC
ATCGTGAGAACCGATTGGGATGCAGGCTTTGAGGAAGGGCGCCAATATGG
TAGAGGTCGCAGTGGAGGTCAAGTAAGAGATGAATATAGAACAGACTTTG
ATGATGAACGAGGTGGCTTTGGTAGATTATACCAAGAACGAAACAAAGGA
AATAATGATATgatgattgattgattaaaaaaggtgtaaaaataATGATA
GTATCATTGGTTTTCTAAATGGATTTTTCTGCTATTTACGAATGTGATGA
TTACCTTATTTGGGTGTTAGTTGGATATTTCATTCTCTTTTTGTATTTCG
AAAATACATCTTAGATATTtgattataacatttttttactttgtaggctt
cttgtatttatttttttagtgttttattaagagtaaaattttaataaatc
gagAGTCATGAGAGAGTTTTTTTGTAGTATCCTTTAGAAATCTTTCAGGA
TCACC Run BLAST on NCBI protein sequence of TCONS_00066033-protein >TCONS_00066033-protein ID=TCONS_00066033-protein|Name=TCONS_00066033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MAAGLSAYRDQHFKGTRNELERKLEGSNTLYVGNLSFFTTEEQIYELFSK
SGDVKKIVMGLDRVRKTPCGFCFVEYYFRSGAEDSVRYVNGTRLDGRIVR
TDWDAGFEEGRQYGRGRSGGQVRDEYRTDFDDERGGFGRLYQERNKGNND
MMID Run BLAST on NCBI transcript from alignment at scaffold_449:3184..22596+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066033 ID=TCONS_00066033|Name=TCONS_00066033|organism=Clytia hemisphaerica|type=transcript|length=19413bp|location=Sequence derived from alignment at scaffold_449:3184..22596+ (Clytia hemisphaerica)
TGAAGAAACTGCCCCAGGCCTGCTGTCATTTGCTGCTTTCAGGTTTGTGA
TTTCTCTTGGAGTATAGAAGTATAGTTGTTTTAAAAGAGCTTGAGAAAGT
TTTTACTCAGTCTAtcaaattgcttgaaaatgtgCCCCTgtaattttttc
tatttcaaaaagtaaaaacaaacaGTAAAGTCTTTACTAAAGTAAAAACT
CATACCAGACCCGTCCAGAcccccagacggtgtcaatcgaacgaatcgaa
cgccgaatcaatcgaacgcaatcgaataattccaattcgattgtcgaacg
caatcgaatcgcaatcgaatattacccaggatttactgttcgattgcttc
gattacgttcgattgtattcaattacgttcgattgattcaattgtgtatt
acattttattcgctttggtatggtaCTTAACACTCggacgcccacgctaa
aaagctctaacagagtgatccaatttaatttaatcgcaatcaaactcatc
gaacataatcgtaattgaacattaatccaatgtatgtaattgacaatcaa
tcgaaccaatcgaacatagtcaactatcaatcgaacattactcgaacgca
atcgaacacaatcgaatattacccaggaatcggccgttcgattaagattc
gattacgttcgacaatcaaatcgcaattattcgatcgcgtttgattacgt
tcgattggttcgattgtgatttttgttcgaagttgttcgattgacaccgt
ctggagacccaatcaatcgaacttgtcaaaccaatcaaacaatcgaacga
ttaaagttaaaaaaattaatcaaactctaagattttttaaaagattgcgA
GTgttcgatagaccttttttcaaagaggccaccctgttgaataatgatgt
agtccagcagaaaaacaatgataaaaccatgcataattattacaatatgc
atgatacagtaattatgcatagCTCTATCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaatatgcatgatacagtaattatgcatggctctatcattgtttt
tatggctggactacataatcattcaacaggacgtcctctttgaaaaaagg
tctattaagttcgatcaatgggtttcggttcgatcagttcgataaatcaa
ttttgtttgacaagtttattgtgctgctccgccaccttatattagcttct
tttcaaagccaaatttggaatttaaatcaggaaattacttccgataacgg
attacacgcttttcctgtatccttttagcgccagaggccacgtgcgtttg
gtttgggaacgcgaaaagCGAACGCGAACTACCTATGATacttttttgat
actttttgaaggcttctttgttcgtctcaacaatcatccaatttgagaAA
TCCGATGATGGAACATGACTTTGATGCTATTTGAATCAGCTCTCCTAAGA
GGAAAGTAATTCGGCAGCAGTGGCTCGTCCGGTagtgaattgagaaaatg
gtccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATCAAGGAATACTCCACGAGTGTCTAGAGGTGGATCAACATCAAAA
CCATTCAGAATGTCGTGTGTTATAGATAACAGCTGAGACAcacagaaaat
aatttttactacTTCTTGCTGATGTACGTGAAACGTTcaattaaaagtaa
taattgGCTTCTTGGCGTAGGTTTGAACCAACTTGAAACGTTGTAAAAAT
GAACTTATATTACCAAACGGTTTAAAATGCAACGAATTCACGTTGACAAA
TAACTCGAAGCTTGAAGTTTACTATAAATATAATCACTCGATCGTGCAAa
cttagataataagagacaaaggagaagattTGTAATTCTTTGTTCcacat
tttcaagcaattttcaaGCAACAGCGTGTATACACCCTTACTCTAATGGA
ATGAATATCATAAACGATTTCAATGTTTGTATTACAAGGATTCAAATATT
CttatattcaaatctttcctttttatataattttgtgCATTTCTTAGCAA
AATGCTTGAAAACCCTTGTACATTATGGTGGGAATTAAACTTATCTGGCT
GAGAAGAAATTAGAACAGTGCACTATAAGTGGTGGTTTCTAAACTTATCT
GATCGAAAAACAGCTAGTACAGTGTACCGGGTGGTATCAATAAACCAGTC
ATGGAGAAAAGTCGCTACAGTATACTGAAAGGGTGGCATTAAAAGTTGGT
TGTGGAGAAACGTTAGTACAGTGTTCTataagggtggtgtcaaagccccg
gGCGTGTAAGAAAGTTACTagagtgtactaaaagggtggtgttaAAGcct
agtacagtgtactaaaagagTGGTATCAAAAATCCGGTCATGGAGAAAAG
taagtacagtgtactaaaaagaGTGGTGGTCTGATTTTCCAAGATattgg
attgtcgtcatggttacttttttcTGCCTTGATTGCGctctgaatagaat
ctcgattggttGGTACAGGTCGAAGTATGATTTCAgcatgtgcttttcac
ggtagtttGGTATTGATCATACATGATTCTGGTCAGATTTTCCATAATTC
TAGCCATAAAACTTTGTTTACTTATTTAAACCTTCTAGTGCGCACTTTCT
CATTTCAAAACGTGCACTTTGCGAGTCGAGAAAAGTATTTACGGATTTTG
CCTGACTGCGTTAggttagatttttttcattgtttaatTGCATTTATAAC
ATTCACAGGAGTTAGGAAAGACATTTTAATTTTATGTCTTTTCACTTATA
TTGAATCGTTGggtccaaccaaaatattttcaggcttaCCCACAAAAGGG
CCGTTGAACCTGGTTTGGGGATGTGTGGTACAAAAGGCCGATGATCATTC
ACTATTTTCTCCAATGttaatgaaattattttgataagtCTTGGGTATTa
tcctgagtatcagaggttgagttttcaaagaatatatcaacctctgacga
ccaaaattatagaaattttatcgcgtatgtgtcaatctaatcactgtaga
attAAAAAGAATGCGACTTTTAGTCCTTGAGATTTTCGACCATAGTCGGT
AACAAAAGGTGACGAAATTTGGTGAGTACGAAATTTTTTTCACACGAATA
TTTTGGCCCACACTACAGGAATTTATTCACTGactacaatcaaagtcata
atatttgagaaaaaaggaaaattccccgaaatcttacaaccacaaacgat
ttggaagcgctctaaattaggttggacgggtagagttttattttaactct
gagttttaacgctagacttaagacttgcGGAACTGAAAGTCCAAGAATGA
TCCAATAGGgttcagaatatagcctggatgtctataaacccctcccgaat
tgaaatattcgaataaatatATCAATTTGcctaggctgcacacatcccct
ctgataagttttgatatagcaATAGCGACTTTTTCACCCGAACTTTAATT
gctgaaaacgaggaattaaccaaaattcccaatatatttcgacccTCCTG
ATTGTCTCTGAAAATAAacaatgccaaattctgctctgcgggCGGGgcgt
ctaatttcaaacttaaaggCATATTTTCCGGTTAAAAATGTCCCTTTCTT
CGAATTTATACTTATAGCCAgaaatttttggatttccatgaaagtgatat
tttcaaaaagtgaaatatttgacaaaatactgattttgactcgtcgaaaa
tgcttcaaaatggtcggaaaaaggttttttttatttcaaaattttcagct
tttctCGTAATTTTAGACCCAGAtcgcagaaatcggcattttcaattttc
aaagacaatcaaagtcataatattagAATATTTCTGGTTGTAATGCGCCA
TCGAAACGTCGGAATatacatgNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCTCAAAATCCCGCTTCATCCCCCTCAAAATTGGAATTGAATTAAT
TCCCGATTGGGAAGGGCTAGAGTTCTTAAATTTTCACTGGATATTCGTTG
TTATCTTCCTTATCGGATAAAAGAAAGATCTTGTTGTTAaatattgtcaa
tttttctttaagACCAAAAATAGGCATTATTTTAATCAGATAAATCGACA
GATCGCCATGTCTCATACATCATCTTGGGTATGACAAcagaaattgatga
aaatagggTCATAAATAAGGAttaaattttataaatgtttcaatattttt
attccctGCTTTGTTTTAATGACGAAGATGATGTCACTATTTTAATCTTA
AACAGCTCTTTTGAAGAACGTGATGTTTTCAAAGCATATCAATCTGTATC
CACTTGCACCGTCAGCATCCTATTGaacatgaaaaaaaagtttgttgtaA
TTTGGTGAACACAGCACGTATTTTGTGATAATGTCaatatttacataatt
taattaaaaataacttacattttgtcaatattttgaaTTGATAGTTTTTC
ATTTAAGAACCCTCTATTCTAAATAGCAaacacatttttatttttaagaa
acactaggctcagaatgcctaaaagctaagaaacatctaagaataatgct
aaagctcgaggctgagaatgagaaaataacattttttaatttggattttt
aagaaacaaaccAAATTgtttccaatcaaaacaaatgtttttttttcttt
gcatgaaaaataggctgattatgtcaaaaagtttagaagcatgtaagaaa
catttaaggctcaaaattcAGATAGATAAAGTAAATGGAGTTGAATCCGA
AAAACAACTAGTTCTTAGTGGAGTACTTTACTAGTAAGGTAGTGTCCTAG
GGCCTACCCATTTCGTTCTTTACATCAACGATTTACCagattcaattaaa
aaaatcacaactCTTTCTTACTtactttttgatactttttgaaggcttct
ttctttgtttgtctcaacaatcatccaatttgagaAATCCGATGATGGAC
CATGACTTTGATGCTATTTGAATCAGCTCTCCTAAGAGGAAAGTAATTCG
GCAGCAGTGGCTTGTCCGGTagtaaattgagaaaatggtccaattgttgt
ttaaaattagttttggAGCAGTTTTTGAGGTTACAGATGGATTGTGGGAG
GGCATTAAATAGTCTGGGACCTTCTTCTGACAGTACGGTGGCCGAGAGAG
GACAGCGCTTTTTTTTCAACagcgcgtttttttttttcaacagcgcattt
tttttcaatagcgcgttttttttcaacagcacgttttttattcagaattt
gcaacaaaatagataaaatcaggactgtctattctgtttttccttctcca
agcatctaaagccatttgacgagtcactaacagccatcaaatcctgggca
aaccctgcattttgacatcatccaggtctttctgcaaaattttgcagggt
gcaggcctgcaaaacgcttttgtacacaaaatctaaaatacagactcgaA
TTCAGGCTTCCTGTAACGCGACTTGATAaacagttttcttatatttaccg
ctgactttaagtcagtaaaataaatctaatgacaCTAACGAATGATCCGG
AAAAACAACTCCGGGTAGGCTAAAACAAGCTGCAACAAAAATGACTCCGG
AGCATACCCTGCGAGTGTatgttttgcaggggtgtcgcaccgccccTGAG
GCGAGAAGATGGATtgattgaacaaattgccggtaccaAAAAGTGGTCTT
atgcattgagtttaaagcccgaagggctagagaagaatctctaacctttc
ccaggcaagaaaaagtgaagccacttatttcccatccaaaacgtgcctgg
aacgcgccgtaatcatgacgacagattgtatctagcgtttcttttgtttt
taaggactacaatttttgaaatctagcggtagattttacttttaatccgg
cgtttgtgtaaaaacatcgcgcaggcgttctggatgggaaataagtagct
tcatttcccatccagaattTTCtcctctagccccttcggggctttaaact
caatggtcttATGACATAAGATGTggtctttttcttcaaagatgGCGCAT
AAATCATTGGAAAAAAGGCTTTGGTTGAACTAAGAATACTTTTAAAGCTC
TCTTCGGTTGAACTGGCTTGAATGTgaccaagctatatctgccatctttg
atcgaagttgtTTTGAATTGGTACCACAGGATATCTTATATAATACACTA
GATTTAGATAGAGTTTTTCTGTCCCTTACTAAAGCAAGATCCTTATTTTC
CGCTAGGGATAAAATTTTTAGCCAATGCGAATGCGCAGTGTGCATTTTCG
ACGTCACCTAGGATGAAAATTTGTAATTGCGTTTTCAACCATTTCGGTAG
AATGGACCAAATGCGTTTCTTGAAAAGAGGCGATCGCATACAGCGCGCGC
AAAGGGTGGAGTCTAACCTCTACTTTTGTGTGTTCGATACCGTGACTGAA
AGGAAATGTCCTAGTAATCTCTTTACCAGTCCCCTCACATGCATAAAGTG
CCGCTAAGAGTATTGATAGGTGTATTATGTGATTAATTTTAGGGCAGAAC
TTTCACGAATTCTTTCACGATTCTTGCCCTTTTCGCAAAGTTTTCTGCCA
AGTACACGAAAAGTTTGCCCAAGTTTTTTTCGGGAAAAGTaaactttttt
gctattttatactcagttttcagttttagtgcatttttattgcttttttg
cCTGCAAAATGAAATACAttctaaaattcgcgaaagttatatCCGATGAA
TTTGTTCCAAAGCAAAAGTAAgattcgcgaaatttcgcgattttgcaaCC
TCGTGAAAGTATCTGTGCGAAAGTATCTGTTCTTAAAGTCATAGCAATAA
TCTAAGATGAGTTTCAAACTGGATGGGGAGCAAACGCGAAGACGGGAGTT
TCGGGGGTTTCGAATTTCACTAGCTGTTCATGTAACTCATGAAAAtttat
taataaaaaaataataaatcttgTGTATCATAGATAAAACTTATTTTAAA
GGTCATCAAACACATCTTTTGATAATTTGCAAAAATAGCTCTCTTGCCGC
TGCCCATATGTTTGGTGGAAATATAAGATTTTCTGATTCTATaacatatt
gaaaaaaagtcatttaaacTCTTCATCTGTGTTAGCCTCAACCGCTAAGG
TCGCTTCTTGGGGAATGTTTCTTTCGTTTAAAAGGTTAGCTATCAAATTA
TCGTCTAGGTTTACTTTTGGTCTTCGAAATCGACTGACTCTGGAGCGTAA
AATAGTACATCCGGAATGCCTCTTATGGTATCATGTCGTGACTTTCTTAT
ATAATGAGAGTTCCATTCATGTTTTACATCATCAAGttgattttgtaaaa
atctcGAAAAGACGAACCACACACACATTTTAAATGAACGTGATGTCCTG
GGATGAGACTTCCGTCACTAACAAGTTCTTTAAAGAAATCAATTATCCAT
CCAGTAAATGATCTCTTTAAAAAAGACCACCAGTTCTCGATCCTTCGATT
CGCAACTGAAGTGCCATAAAAATGTGCAgccattttgaacaaaaaaacgA
TGAACATCAGCCATGATTCCATTTTCAGTTCCAAGATCTGTTCTCATTAT
AGTTGGGCAAAATTTAAACTCCCTCACAATCTCTAAGTACTTCTAATCGT
CGATTTCGTCTAATCAAAACACCCTGAGGATCAAGCTCCCTCATCAACTG
CATCACCAAATCCCGCTTTACGCGAATACCAAAAGAATGTCTAAGATGAT
TACACATAGCTCGATATCCCATACTGAGTCCAGGTCCTTCCATTTCACAT
AAAATTAAAGCAGATAAAGCAGGTATTGTGATATCTGTAAAACTTCGTGA
TAGATTATAAGTCTTTAAAAGACGTTTCAATGTCCTTTCACTCATATCAA
TACCATGGTAAATCCTCAACACGAGGACGATTTGCTTATATTTCAACAAG
CcctctttaaaaaaatgctcGATTATTTCACGTTCATCAGTTACATCTTG
CCTTAATCTCCTCTGACGACAATAGGTTTTGGTACCACAATGAGAACAAA
ATACTGCCCCATCGTCATCTAACACCCGTCCACATTCAGTACAATAAACC
ATTTTGTATGTTTAAAGCCTTCCTACTTTTTGTGCTGCACTCAAAACCTA
AATAatgagagcaaaaaaacatggGAAAGAAAAACGCGCTGACATAAAAA
AAACAcgctgttgaaaaaaaaacgcgctattgaaaaaaaagcgcgctgtc
gaaaaaaaaaacgcgcTGTTGAAAAAAAGCGCTCTCCTCTCTCGGCCACT
GTATGACAGGGAGTCTCTCCATATGTTTTTTTGCCTTATGTTCACCTCTT
TTAGATAACATTTTCTACCCAGTCTCTGATTATCGTAACTGAAGATGCCA
CCTTTgtcagggtgtctacgggaccttgaaaaccttgaaaaccttgaaaa
ccttgaaaatgaaccacccaaccttgaaaaccttgaaaactaccgggtgc
gccacaaaaaagtttctctctttgaaaccaaatttctagaaatctaaaaa
ttttaaaagaaccattcctaattcattggaaagaagaaagatagacttaa
attttgatgggtcatttattaaattcgattaattagatcaaaagttatat
gctcaattgaataaaaatgttactttcagaaagtgctcgaaaacgttaaa
aatcgacctatcaaatttttactttaaatttggcaatcgcaatagccttt
accatgattaagagcatttttcattaactaaacagataaattttgaaact
gaaatgtcgaaagggtttaaaatcctcatcaaaattaatttaatttagtt
ttaccaaaattttcctgagatttttggttctagactggataaagtctatg
taaggctggatctacctcgaaacccatatttgatgtatttttatgaattc
tactagattttttggcctttttcgacgaattttcttcctttcattgaaat
tcaacctttctttaaataacaaaaggtcatttagacagctaattattaTT
TATAATGACTGAACCGAAAATACTTatatatcatgtaattatgcttctgt
ttaatttgataggtcgatttttaacgtttttgagcactttccgaaagtaa
cttttttattcaattaagcataactttcgatctaatgaatcgaattcaat
aaatgacccatcaaaatttaagtttatctttcttctttccaataaaatag
gaatggttcttttaaaatttttagttttcgaaaaaattacttttaaagag
agaaacttttttgtggcgcacccggtatataacCAGAGTTTTAGCATAAG
AGTCTCTTTGATTTATAGGTCAATATCTAAataaaaagatttagaaaagc
AGNCAATTTTCtcggaaaaaccttgaaaaccttgaaaaattgttaaaacc
ttgaaaagcactaTCCAGTCATTGgaaaagtaagaataagtaaaaaaccg
cctgcggcgctaaacctTTATAACATTTAGAGAATACCATATTTCCCTGT
TTCTGTTGCGATTCTGTCGCAATCAAAGCAacatattcttttatcattag
ctGAGTTTTTGTCACAAATTTTCCTATGCATGAGCCCTAAGAAATCGGCT
GTTCCCCAatttttaaatcgcttcagggcgtcttggaataatggccgttc
atcaataaaatttcaaggatttctcaaaacaactcttttggcaattgatt
tttgtaaaatacaaaatcaaaaacaaggcgtttttagccatttgaaagag
ttaaaatcaaaattttctctcgtcggcgcaaaccatggttgcgcctcctc
ggtcACTGTAAACAATTGGTTTTGCTTCTAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCACCTACCACTCTGTGGTATTGTTCTCGAGAGGGAGATAGGAAT
TTAACTGTGGAAGTAATTCCccgggcaccaaaagcgaataaattttattt
gctgttCTCTATTTTTCTTCCACTTaccactctgaaaaaaaaatcctgta
aagagccatatcaactgagtatcaaaaaaccttgaaaaatgccaaagttt
ttgccaaaaaaccttgaaaaccacttaaaaatgacaaaaaaaaccttgaa
aaccttgaaaatcccgaaaaaaaatccgtagacaccctgtttgttttcag
catagttaaaatttggtacAAGCTGTTCTAGGATGCTCCAGGTGTAGATA
ATCCTGTATCTTTCTCTGCGCCGCTCTAGGCTGTATAGTTTGAGTTCttt
gagcttctcccaataGTTGAGATGTTGAAGTGTAGGGATTCCATTCAGGT
AAGATTTTTGAAGTGATTCCAGTTGTTGGATCAGATATCTTTTTGAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGGTAACTTGAGTGTTctttcagttcttcattttttcc
gtatTTAAGATGTTCAAACTTCAAGCCATTGAGCTGCATGTTGTTTAATG
ATGTCCATTGATACACCTCATCAAGGTCGTTTTGTAGAAATTGAACATCA
GTGTTGTTAGAGATCTCCTTCATTAAACGTGTATCGTCGGCAAATGAAGA
TAGAAATGAATGTAGGATGTTATTGTCAATATCTTGGATCATTATCAGGA
AGAGAAGTGGACCAAGAACTGATCCTTGGGGGACGCCAGAAATGACTTCT
GCTTTTTTGGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGTGATGAATGAGT
CGTTCTGTGTGCGATAGAAGTTGGCTAAGACATGATCTTCCAGACCTGAA
TCCATGTTGATTATCGTTAAAGAAATCGTTTTCTTCTAGATGATTTTGTA
GCCGTTTTCTGACAATCTTCTCGAAGATCTTGGTTACATGCGAAGTTAAT
GCTACAGGTCGATAGTTTTCAGGTAGGCCTTGGTTGCCTTTTTTAAAGAT
GGGTGTGATGAAActggttttcaaaagttgaggTGTGTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTGGTTGC
CTTTTTTAAAGATGGGTGTGATGAAActggttttcaaaagttgaggTGTG
TAGCCTTTGTCAAGTATATTTCTCCAGATTAGAGAGAGAGGGGCCGCAAT
CTGTGACTTgacttgttttaagaaaattgcaGGGAAGCCGTCAGGTCCTG
CTGCAGCATTGGAGGATAAAGTGTAGATCTCCTCTATAATATTTTGTTCT
GAGAAGTCGATATCACTTAGATTTGGTTGATTTTCGTTGATTTCTGGCAA
GTTATAGTTGGGTAGTGGCTCCATAAAAACAGAGGTATATTGATCTTGTA
GAatgtttgccattttttgacTGTCATTTGTCAGTTGATTGGTTTTTGGA
TCCTTCAATGGTCCAACCTTCGGTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CATGTTCTTTAACAGATTTAGGTAACACGGTCGATGGACTTCTTGCCCAC
AGGAGCCGCATTTTAGGAGTGAACTGTCATGTATTTTTATTCTGTATGAC
TGGTTGCATATTTGGCATATATCTGGAAAATAGCTTTGTATAACCACACA
TAATTTTTCAATGGCTTCATCTTTGTTCATAGAGTTAGTCTTTTTTGACA
GGAAGTTCAATGTTTCCATAATAGGATCCTTTCGACACGATTTCagcgtt
tttacgttatctTTGGTTGGCTTTTCTGGATCTATgtctaaaattttcaa
tatctcTCCAGAACTCACAGATTTTTTGAAgttctgtaaaaaggtccaag
ttcctgaatagttttgctatgttctgtgaaaaaatctaTAACCATcgtca
aatactcgttcatctatttaagattgaagacaaaaatttgcgaagaaaaa
taatccttgagcacaaaaaaatgcttttttaaccacttttttccaccgaa
aaacaaataactatagacttaccttccccaaacatcgaagaagcctctac
taattaaagtaaatgaaataagataagataaaaccttaaaatcaaccaga
atttacaacctttcgtccaaagcaaaagacgagCTTTTCTCGctgccatc
ttgttttagaatgagaattattttcggttccaATTCCCACgttctttttt
catccaattagatcgcgcgatttcactttcgctttctctaaaTTGAAAAA
CCCGCGcagaataaaatagaaatacagggggtcacactactggctaaagg
aactgaaagcaagcaattatataaggccaatatttttggtttttctgaag
gacaaaaggtataggaagctttactgaaggagggataaggctgggactat
ctatttaaaagatataaaggcacttttttgggtgataattaagattttac
ttagaaactttaattctcttacccccgtctcgggcccccctgatatgagc
aagggaaccatgttggtcagatcaaaacaaacaaggaattaattcctgta
actcaaagaaaattggaaaaagctggtttttgactgtttctgatcctaca
taaagtgctattttttggtaaaagctatgcagtttatgtttggatttcta
gaaagcttacccattcattgtcaatacaatatattttttatttgaaagta
atctcttcatggaattaatcaaatcttgtagggtcatttttcaaaaaagt
tttgccaaatttgatttttgcatTTCGCATGTGAGGCGGTTTTTTGGGGC
GTAGTATTCCACCACTCGGCCACGTGcaaaatcgcaacagaggggctacg
gactttattccggatagacaaatatctgggtacaataaacgtcaagctat
taagtccgggaactgtcgaaatggcaatcgcgtgccaggataaagttttt
gcaagcgagggaagatatgagaatttaatatcatcgaactaatcaaactt
tttcatgaccgaactaatcgaactgctattgtTTCAAAagttgtgagtgt
tcgattaggtttgactaatttttttaattgaactttaatcgttcgatgga
gttcgattagttcgattgttcgatagGTTTGACAAGTACGATTGATCAGG
TCTGGCTCAtacagttagtggaagtacttcgTTTTGTGAAGCGTCTTTAC
AACTACGtcacatagaacaaaagaaaatagcaaaaaaacaaaggaattac
ccacAGCCGCCATTTcgcaaccatggggaatcgcGATTTTACGAAAATGG
GAATACTCATCTcgaataaagcatcttctgaaaattttatagaccttttc
ccctttccatccgccatattgaattgtatgcaaaataattatggtggccg
aattgccgtggtgaaattcccttaaaaattatgcaaaacatatgcaaaag
aaagtattaatataaaacttacatgcataattggcattatattaaagtgt
aatcttgtagaagaaagattaaatttgcttcttttgaaaactagaaataa
tcaaactcgctcatctcttagaacaagcacttgaAAAAACCATAACATAA
ACAACTTTAACACAAGAACCCCCTGATATGATTTCTAATGGTAAAATACT
TGCTTTTACTAATATCTAATATGTTGTGCTGGAACTGgtttaatattttc
ttgcatAATGAAAGAAGGTACAACATCATAACcagtcataattactgctt
tcaattTGCATGTTTGAAAGTTTGGTGtgtgtaccgtaagttggtccaAT
ATCAACAGGGGGGTACAAAGGCAGGgtactaccttattggaactaatttt
cgcgggaactaattttcgcggtcgaaaaaaaatttccgaaaaattgcatt
tcgcgggttttaatttttgcggaTTTTTCCATTCAGGAATTtttgcgggt
tttaattttcgcggttttgcctttttttggacaaatttctttcattttcc
tagggattttccaaatttttcgataaaattggaaaaaattgtatttcgcg
ggaattaattttcgcggttttcgactgtcaaaatttttcgcgagttcaaa
ttttcgcgattttgacgaaaaactgcgaaagaaaaacgctaaaattaaaa
cccgcgaaaattagttccaataaggtaacccatagccgggtggtggtgtc
tatttttgcatttcaaaaaggTTAGTACCATGTACTACTTTAGGGGTggg
gtgtgtatttttcactcttctAGCAAGTATATGgtactatttgggtactt
tttcacagagTTTTGCtgctttttcaataaaaaaagtagttttttgtaat
attttgacttttttcaaatattatttttttgatttgaaattttttttaat
tgagaaacttttttttattcttttgagaaattttttgatttttgtgaaga
caaaacttccgaaatggtcaagaagtgtgttattgaaatcaaaggacaaa
agccTCTGacttactttaggcgtacaaacttacgcgagcagaaactttcg
cgaggacgaaaaatcgcaaaattcacgacatttactttcgcgaatttaac
ggaaaaatatttttcgcgagcataaactttcgcgaatcaagacgtaaaat
tgagaattttcacatgaaaaaatggcttagagacacgaatacttcttggg
ttggcttgaaacatttgtcctttgacttattagtcttttagaaggctaaa
aagtgccacaaaagttacattttattcaaagtttgaagttttacagattt
ttctattttgtcatgaatttttcgcgagcataaactttcgcgaatgaccc
ttcctagaatttttaaagacatttactttcgcgaaaagggccaaaattcg
cgaaaatcgcgaaagtttctgctcgcgaaagtttctacgcctaaagtaat
caATGATAGTTTGTTTGAATTATCTGTCCATTTCGGTCAGAAAAACTAAC
ATAGTACCCTCTCTTttggtctaatctgtaaaatataagattttaggggg
tggtgtctctatttttttacagcaaaaatgaagtagtaccctgtactaaa
tatgggtgggtggtactaaaaagaaattgagtgaaaaatcaagttagtac
cctatgggttagtaccctgcctttGTGGGCCAATCCAAATGAGCCATACA
AGTATAAGGTCTTTCCGCCTTCCAATAAGATAAGTTTGGATCGTTTTAAA
AATTCATAGAACTCAAGAGATATCACATTTAAAGATGGTAACTTATTTCT
GGCACACCCAAAGAAACATTGAATTTTATggcaaaaattcacttttttgt
tgTGAAATTCTTTTAAAGGAAATAAAAGGTATTAAAAAACCTTGGATGAA
GTGACATCACAATTTAGCTTGCGAGATTCTTGAAATTATGAAGTCATCAC
AGtgtcaaaaaaagattcaaaagtaAAAACCAAGTTTCTACTGTGACtga
cctactttcagcaaagatggcggattattttgcttcacctgtCTTGCCTT
GGGAAAGatagagtagctctatctagtctTTTATATAAGATACCTGTGGT
AGGTACCAGGTGTCATAGGACACTTTACTGCAAGATGACTGAAAGCATGT
CAGGTCATTAagatttttaacatttaacataTATTTTCATTATCTTTTAG
TCAAGTAATTGATAAGAATGGCTGCTGGCCTTAGCGCTTATCGTGACCAA
CATTTCAAAGGTACTCGTAATGAACTTGAAAGGAAGCTTGAAGGGAGCAA
TACATTATATGTTGgtaatttgtcatttttcactACCGAAGAACAAATTT
ATGAATTATTTTCGAAATCAGGTGATGTTAAAAAGATTGTAATGGGCCTT
GATCGTGTTAGGAAAACCCCATGTGGATTTTGTTTTGTGGAATATTACTT
CCGCAGTGGGGCTGAAGATTCGGTCCGATATGTTAATGGAACTAGACTGG
ATGGTCGCATCGTGAGAACCGATTGGGATGCAGGCTTTGAGGAAGGGCGC
CAATATGGTAGAGGTCGCAGTGGAGGTCAAGTAAGAGATGAATATAGAAC
AGACTTTGATGATGAACGAGGTGGCTTTGGTAGATTATACCAAGAACGAA
ACAAAGGAAATAATGATATgatgattgattgattaaaaaaggtgtaaaaa
taATGATAGTATCATTGGTTTTCTAAATGGATTTTTCTGCTATTTACGAA
TGTGATGATTACCTTATTTGGGTGTTAGTTGGATATTTCATTCTCTTTTT
GTATTTCGAAAATACATCTTAGATATTtgattataacatttttttacttt
gtaggcttcttgtatttatttttttagtgttttattaagagtaaaatttt
aataaatcgagAGTCATGAGAGAGTTTTTTTGTAGTATCCTTTAGAAATC
TTTCAGGATCACC Coding sequence (CDS) from alignment at scaffold_449:3184..22596+ >TCONS_00066033 ID=TCONS_00066033|Name=TCONS_00066033|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_449:3184..22596+ (Clytia hemisphaerica)
ATGGCTGCTGGCCTTAGCGCTTATCGTGACCAACATTTCAAAGGTACTCG
TAATGAACTTGAAAGGAAGCTTGAAGGGAGCAATACATTATATGTTGgta
atttgtcatttttcactACCGAAGAACAAATTTATGAATTATTTTCGAAA
TCAGGTGATGTTAAAAAGATTGTAATGGGCCTTGATCGTGTTAGGAAAAC
CCCATGTGGATTTTGTTTTGTGGAATATTACTTCCGCAGTGGGGCTGAAG
ATTCGGTCCGATATGTTAATGGAACTAGACTGGATGGTCGCATCGTGAGA
ACCGATTGGGATGCAGGCTTTGAGGAAGGGCGCCAATATGGTAGAGGTCG
CAGTGGAGGTCAAGTAAGAGATGAATATAGAACAGACTTTGATGATGAAC
GAGGTGGCTTTGGTAGATTATACCAAGAACGAAACAAAGGAAATAATGAT
ATgatgattgattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066033-exon-scaffold_449-1491911889:3184..3225 | TCONS_00066033-exon-scaffold_449-1491911889:3184..3225 | Clytia hemisphaerica | exon |
| TCONS_00066033-exon-scaffold_449-1510915933:3184..3225 | TCONS_00066033-exon-scaffold_449-1510915933:3184..3225 | Clytia hemisphaerica | exon |
| TCONS_00066033-exon-scaffold_449-1575043694:3184..3225 | TCONS_00066033-exon-scaffold_449-1575043694:3184..3225 | Clytia hemisphaerica | exon |
| TCONS_00066033-exon-scaffold_449-1491911889:21834..22596 | TCONS_00066033-exon-scaffold_449-1491911889:21834..22596 | Clytia hemisphaerica | exon |
| TCONS_00066033-exon-scaffold_449-1510915933:21834..22596 | TCONS_00066033-exon-scaffold_449-1510915933:21834..22596 | Clytia hemisphaerica | exon |
| TCONS_00066033-exon-scaffold_449-1575043694:21834..22596 | TCONS_00066033-exon-scaffold_449-1575043694:21834..22596 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_449 | supercontig | scaffold_449:3184..22596 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00066033 vs. Swiss-Prot (Human)
Match: NCBP2 (Nuclear cap-binding protein subunit 2 OS=Homo sapiens GN=NCBP2 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.570e-58 Identity = 103/140 (73.57%), Postives = 123/140 (87.86%), Query Frame = 3
Query: 72 LSAYRDQHFKGTRNELERKLEGSNTLYVGNLSFFTTEEQIYELFSKSGDVKKIVMGLDRVRKTPCGFCFVEYYFRSGAEDSVRYVNGTRLDGRIVRTDWDAGFEEXXXXXXXXXXXXXXDEYRTDFDDERGGFGRLYQER 491
LS YRDQHF+G E E+ L+ S TLYVGNLSF+TTEEQIYELFSKSGD+KKI+MGLD+++KT CGFCFVEYY R+ AE+++RY+NGTRLD RI+RTDWDAGF+EGRQYGRGRSGGQVRDEYR D+D RGG+G+L Q +
Sbjct: 17 LSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 156
The following BLAST results are available for this feature:
|
