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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066011 ID=TCONS_00066011|Name=TCONS_00066011|organism=Clytia hemisphaerica|type=transcript|length=1567bp
TGATAAATttataacattacgtcatttttcgaCAAGATTGGAGTTGAATT
CATCAATCGCATCAGCAATCAAAACAAGACGATTAGGAATTCCATGTCGG
ATTCATTCATTCTAAATCATCTAGGAGTAATTTGCTTAAATGTTacacaa
aacaaatcaaaagaaaattgcaataatttgattttcatcagaggaaatta
ttttttcatgcaattaaaaagaaatcaaattgtttcatcagaaatttcac
aaaaataacaaaaagatttttgaacatTATTTACAAGATAATTTTCAATG
GAGTTCTTAATTGGGGATAACGGAATtatcataataaaaaataataatat
aaacTTAAAGTTGGGGTATCTCATTTACAGGTATTtacaataatttttaa
aatctctGTTTCATATAAAAACTGTTGTCAAAACATATTCATTTAATGGT
AACCTAAATAAATTTGGAACATAAATAAAAATCCATCTCATTTTTTGTTC
CCGCCAACATTTTCATTTGAGTATTTAGATTCGGGCAATGTTTATATTTA
ATAGGTGTGGAAGCTTGGAACCCAAGCATAAATCGTGAAGTGCACATTAT
AGTTCCAATTAAATTGTCTATAAGATATTCGTGTGAAATATTTTTCCGGT
TCCTTCGGCTGTTGTTCTTGGTGGTTCGCAAGGTACATTCACAATCTGCA
ACTAGCATTTTACCATTCACCAATAGATTGTTCATATTTGAAAAATGCTT
TTTCGTATTCTTTGTCCCTTGGCTTAAATCTACCTGAGCAACAACGACAA
TTTTCTCTTCAACTTCAGTTCAGTATCAATTTCTTCACAATTTGGTGTCT
TCACAATCGTTTTCCGATTCCACATCATCTTCGACTTCATCCTCAAATGA
AAATTGTTTCGAACGACGTTTTGATTGCGTTTCTTCATTAAAGAACGGCG
TTGGTGGACGACACGACAATGGCTTACGTGAATCGGGACAACAAGACGGC
GTCAATGTTCGGTATAATACTTTATTATTCGGTGAACGACGAATGACCGA
CGATGATGCTCGTTTAACTTTCGGTGGCTTCTCGGTCAAGCATGGGATAT
TGATTGTTAAGGCACGGTCTAACTGCTTACCACCCTTGCTCCTTCTCCTA
ACCCTTAACATGGAGTCTCCTTCATCTAAACTCTTAGAATGTATACATAT
GGCACATAATCTGGATTCAACTTCCTCGACAACgatattgttattatttt
tatcgtttttagcTTGTAGTTGACAAGTATGATCTGAACTGCTCATTCTC
ATGATGGAACTTCTTCTATCGCGTTGAAaaccaaaaaatcaaataattct
AATTCAAAATTATGTCTTTCTCAATATCCTTGtcgtgaaatatttcaaat
ggcTTCTTGTACGTTGAAGGATCAGTTGACAGTTATACTTTCCGATATCC
TCTCACCTCAATGCGTTTACAGTTCCTTAATGACCCTTCAGTATTCTATG
AACCTTCTCTTATAACTCTTTCCTATGACCAATTCTTTTCTTTACTGAAG
TATCTCTAAGACGCGTG Run BLAST on NCBI protein sequence of TCONS_00066011-protein >TCONS_00066011-protein ID=TCONS_00066011-protein|Name=TCONS_00066011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MRMSSSDHTCQLQAKNDKNNNNIVVEEVESRLCAICIHSKSLDEGDSMLR
VRRRSKGGKQLDRALTINIPCLTEKPPKVKRASSSVIRRSPNNKVLYRTL
TPSCCPDSRKPLSCRPPTPFFNEETQSKRRSKQFSFEDEVEDDVESENDC
EDTKL Run BLAST on NCBI transcript from alignment at scaffold_448:140249..141815 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066011 ID=TCONS_00066011|Name=TCONS_00066011|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_448:140249..141815 (Clytia hemisphaerica)
CACGCGTCTTAGAGATACTTCAGTAAAGAAAAGAATTGGTCATAGGAAAG
AGTTATAAGAGAAGGTTCATAGAATACTGAAGGGTCATTAAGGAACTGTA
AACGCATTGAGGTGAGAGGATATCGGAAAGTATAACTGTCAACTGATCCT
TCAACGTACAAGAAgccatttgaaatatttcacgaCAAGGATATTGAGAA
AGACATAATTTTGAATTagaattatttgattttttggttTTCAACGCGAT
AGAAGAAGTTCCATCATGAGAATGAGCAGTTCAGATCATACTTGTCAACT
ACAAgctaaaaacgataaaaataataacaatatcGTTGTCGAGGAAGTTG
AATCCAGATTATGTGCCATATGTATACATTCTAAGAGTTTAGATGAAGGA
GACTCCATGTTAAGGGTTAGGAGAAGGAGCAAGGGTGGTAAGCAGTTAGA
CCGTGCCTTAACAATCAATATCCCATGCTTGACCGAGAAGCCACCGAAAG
TTAAACGAGCATCATCGTCGGTCATTCGTCGTTCACCGAATAATAAAGTA
TTATACCGAACATTGACGCCGTCTTGTTGTCCCGATTCACGTAAGCCATT
GTCGTGTCGTCCACCAACGCCGTTCTTTAATGAAGAAACGCAATCAAAAC
GTCGTTCGAAACAATTTTCATTTGAGGATGAAGTCGAAGATGATGTGGAA
TCGGAAAACGATTGTGAAGACACCAAATTGTGAAGAAATTGATACTGAAC
TGAAGTTGAAGAGAAAATTGTCGTTGTTGCTCAGGTAGATTTAAGCCAAG
GGACAAAGAATACGAAAAAGCATTTTTCAAATATGAACAATCTATTGGTG
AATGGTAAAATGCTAGTTGCAGATTGTGAATGTACCTTGCGAACCACCAA
GAACAACAGCCGAAGGAACCGGAAAAATATTTCACACGAATATCTTATAG
ACAATTTAATTGGAACTATAATGTGCACTTCACGATTTATGCTTGGGTTC
CAAGCTTCCACACCTATTAAATATAAACATTGCCCGAATCTAAATACTCA
AATGAAAATGTTGGCGGGAACAAAAAATGAGATGGATTTTTATTTATGTT
CCAAATTTATTTAGGTTACCATTAAATGAATATGTTTTGACAACAGTTTT
TATATGAAACagagattttaaaaattattgtaAATACCTGTAAATGAGAT
ACCCCAACTTTAAgtttatattattattttttattatgataATTCCGTTA
TCCCCAATTAAGAACTCCATTGAAAATTATCTTGTAAATAatgttcaaaa
atctttttgttatttttgtgaaatttctgatgaaacaatttgatttcttt
ttaattgcatgaaaaaataatttcctctgatgaaaatcaaattattgcaa
ttttcttttgatttgttttgtgtAACATTTAAGCAAATTACTCCTAGATG
ATTTAGAATGAATGAATCCGACATGGAATTCCTAATCGTCTTGTTTTGAT
TGCTGATGCGATTGATGAATTCAACTCCAATCTTGtcgaaaaatgacgta
atgttataaATTTATCA Coding sequence (CDS) from alignment at scaffold_448:140249..141815 >TCONS_00066011 ID=TCONS_00066011|Name=TCONS_00066011|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_448:140249..141815 (Clytia hemisphaerica)
ATGAGAATGAGCAGTTCAGATCATACTTGTCAACTACAAgctaaaaacga
taaaaataataacaatatcGTTGTCGAGGAAGTTGAATCCAGATTATGTG
CCATATGTATACATTCTAAGAGTTTAGATGAAGGAGACTCCATGTTAAGG
GTTAGGAGAAGGAGCAAGGGTGGTAAGCAGTTAGACCGTGCCTTAACAAT
CAATATCCCATGCTTGACCGAGAAGCCACCGAAAGTTAAACGAGCATCAT
CGTCGGTCATTCGTCGTTCACCGAATAATAAAGTATTATACCGAACATTG
ACGCCGTCTTGTTGTCCCGATTCACGTAAGCCATTGTCGTGTCGTCCACC
AACGCCGTTCTTTAATGAAGAAACGCAATCAAAACGTCGTTCGAAACAAT
TTTCATTTGAGGATGAAGTCGAAGATGATGTGGAATCGGAAAACGATTGT
GAAGACACCAAATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066011-exon-scaffold_448-1491911889:140249..141815 | TCONS_00066011-exon-scaffold_448-1491911889:140249..141815 | Clytia hemisphaerica | exon |
| TCONS_00066011-exon-scaffold_448-1510915933:140249..141815 | TCONS_00066011-exon-scaffold_448-1510915933:140249..141815 | Clytia hemisphaerica | exon |
| TCONS_00066011-exon-scaffold_448-1575043694:140249..141815 | TCONS_00066011-exon-scaffold_448-1575043694:140249..141815 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:140249..141815 . |
Blast
The following BLAST results are available for this feature:
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