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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066008 ID=TCONS_00066008|Name=TCONS_00066008|organism=Clytia hemisphaerica|type=transcript|length=2841bp
ccgtgtcaattcaatatcaaaatacTCGTAAATTAGAATTACTGAGTAAG
CAAACCATGtcactcttattcaaaaacaaaacatttgagaTTTTCTACTG
TGTAAATCTAAGTAATAACTTACTAACTTTGACTAACGAAAATCTATTTA
CATTCcaataaaactttttgtgaccaaaatagtgacgccataggcaaaac
tgcaagggaaaataaggggtagagaaatagctgaGATTCAAAAGtctaaa
taaactaaaatggttGATACCATttgatagagcatgaaattctgagcaga
aaccccaggcttggcccctaCTAATATCCTAGGAGTTTGtaaaaaactat
gaaattgaTTAACATACTCATGAAGAACATTTGATGGTTTCATAATTTTC
GTCAAGGTTTcactcaggtgagttaagggaagtctcaaacatattttgcg
tgacgcgcactgCTTCCCATGttgttccttaactttcgtatatagctcaa
aagaagcgtattaatgagaggatttcgaaaagtgctgggccaaaaattta
aattaagccaatctcaagatatcgaccaaaaactgattttgccGTTATGA
attacatcgaaaaaacacgtcataagtaaaattcaaatgacgtcattatt
gaaaacagcgataacttcaactctattaatgcaatcaacaccaaattttg
actggagacgtagattaacgattctgaaatatttgttgagaaattttcaa
aatttttagatgacgtcatttactgtcggtaaaaaccaaaatacgtcaaa
taatgatgacgtcatcaaaaaatttttttcatgcattatttcaaaatcaa
caatcaaCGTCTCCAGTCAAAAGTTGGCGTTAATTGTAGTAATGGaatcg
aagttatcgctgttttaaaaaacgacgtcatttaacttgtctttttAACG
TGATTTTTCAACGTATTTcctaacgtcaaaatcagtttttggccgatatc
ttgagattggcttaatttaaaattttggcccAGCATTTTCCGAAATCCTC
tcattaatacgcttcttttgagctatatacgaaagttaaggaacaataTG
GGAAGCAGTGCGCGTCacacaaaatatatttggaacTTGCCTTTAACTTA
CCTGAGGATTATTGGGACATTATGATATTGGGCTCTTCCGGAAAATGTCA
GTACAtgaggggtggaggatatagtgtccggggggtagtgaaatatctac
aaaatttaccttgtctggggggtaaatttgctctgttcgggggtaatttt
gctctgtttgagggtaattttgaatatccagggggtcaaaagtcacaatg
tccgggggggggggggggaaatttNAAcgttttacccccgtctttttgac
gtttatgattcgaacgtcaaaattagAAAACCCCATTCGGCGCGATGCGA
TTGTTTCGAGTGCAAACActacctcgttttgaaaccattaccaaggtggT
TCAATCCCTTGAGCCTTCTAGTTTTACTTTCATAAATAAAGTAAACTACT
TTATCAAGTCCTCTGAGAatcatttaaaatataaatattttgaaaacgag
gtaagcttTGCTCAcgacataatttatgaaaaggtctatccagAGTATTG
TCAAACTGTACGACTGTACATCGTGTCATTTAATTCCTTTCTTTGTCAAA
AGAATACGATTCTCAACTTTCAACAAACCAATCAGAGAACAGTATTTTCA
TATTCTAACGAATCAAAATTTAGTTCATAGATTTTCTAATCAATAAGAGA
AgatcatttttaaatttctaaccAATCAGAGAATGGTACAACaaggtttc
ttttctttttcatcttccaTCGCTTCAATTGTTATTTGACGTTCGAATTT
TGCACGTTTATCGCTCACATTATTATTCTTAAGAATCTCTTTTACACCAT
GTTCGAAAAGTTCTTTAACGTTATGCCCATTTTTTGCTGATGTTGAAAAT
TGTGCTGGTTGTTCGGGTAGCTCTGTGAAAAATTCTAACCCAGTCTCTAT
ATTTTGATGAATGTCTGACCCATGCTTGTCATATTTTGTCCCCACAACAA
TAAAAGCCACTTTTTTATCGTTTAATGTCTTTCGAGCTGAATCGTAATAC
CATTTCATCGAATCAATTGATTTTTGATTCCCGATTTCGTAAACAAGCAT
AAGGACATCAGATCTCGCGATATAAAGATCGTCCATTGTTGGGAATTGTC
GGGATCCGGCGATATCAATAATTGTAACATTGACTCGTTGATTCATGCAA
ATAATCGTTTTCATAAAGAAATCTTCCACAGTCGCTTGATAATTCTCGGG
AAAATCGTTATTCACCCACCGACGAATAAGTGCCGACTTTCCGATATCGA
CATCACCGAGTAGTAACATACCGACCGTATCTTTTCGTTTTAACGATTTT
AAAGCTGTTTTCCGACGACTATCCATGGTATCTGATAGAATAGCTATTTG
TCTGAGCCAGTGAATTATTTCTCCAGGTTTTTAGATTCAAAGATTATTTG
AATATTGCTTTTGCAAGCTCCTAAATCGAACGTCGTAACAAGTGAAACAA
AGTTAGTTGCACCTTCAGCCAAATTTACaattaaagccaattttatcCGG
CGTTTACTTTTATCCTTAGCTTAGGCGACAAGTTTCAGTTCCAAGTGTGT
AATCAAAAATGTAGAGATAAAAGCTGAATCTTATCCAAGATATTGCAATA
CACACTTACATACAACGTGAtcaaatgattttaattttatcAAGGTTTAA
TATCTAcaaatgaataaaatgaattaAAGATTACATTCAAA Run BLAST on NCBI transcript from alignment at scaffold_448:795785..801244- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066008 ID=TCONS_00066008|Name=TCONS_00066008|organism=Clytia hemisphaerica|type=transcript|length=5460bp|location=Sequence derived from alignment at scaffold_448:795785..801244- (Clytia hemisphaerica)
CCGTGTCAATTCAATATCAAAATACTCGTAAATTAGAATTACTGAGTAAG
CAAACCATGTCACTCTTATTCAAAAACAAAACATTTGAGATTTTCTACTG
TGTAAATCTAAGTAATAACTTACTAACTTTGACTAACGAAAATCTATTTA
CATTCCAATAAAACTTTTTGTGACCAAAATAGTGACGCCATAGGCAAAAC
TGCAAGGGAAAATAAGGGGTAGAGAAATAGCTGAGATTCAAAAGTCTAAA
TAAACTAAAATGGTTGATACCATTTGATAGAGCATGAAATTCTGAGCAGA
AACCCCAGGCTTGGCCCCTACTAATATCCTAGGAGTTTGTAAAAAACTAT
GAAATTGATTAACATACTCATGAAGAACATTTGATGGTTTCATAATTTTC
GTCAAGGTTTCACTCAGGTGAGTTAAGGGAAGTCTCAAACATATTTTGCG
TGACGCGCACTGCTTCCCATGTTGTTCCTTAACTTTCGTATATAGCTCAA
AAGAAGCGTATTAATGAGAGGATTTCGAAAAGTGCTGGGCCAAAAATTTA
AATTAAGCCAATCTCAAGATATCGACCAAAAACTGATTTTGCCGTTATGA
ATTACATCGAAAAAACACGTCATAAGTAAAATTCAAATGACGTCATTATT
GAAAACAGCGATAACTTCAACTCTATTAATGCAATCAACACCAAATTTTG
ACTGGAGACGTAGATTAACGATTCTGAAATATTTGTTGAGAAATTTTCAA
AATTTTTAGATGACGTCATTTACTGTCGGTAAAAACCAAAATACGTCAAA
TAATGATGACGTCATCAAAAAATTTTTTTCATGCATTATTTCAAAATCAA
CAATCAACGTCTCCAGTCAAAAGTTGGCGTTAATTGTAGTAATGGAATCG
AAGTTATCGCTGTTTTAAAAAACGACGTCATTTAACTTGTCTTTTTAACG
TGATTTTTCAACGTATTTCCTAACGTCAAAATCAGTTTTTGGCCGATATC
TTGAGATTGGCTTAATTTAAAATTTTGGCCCAGCATTTTCCGAAATCCTC
TCATTAATACGCTTCTTTTGAGCTATATACGAAAGTTAAGGAACAATATG
GGAAGCAGTGCGCGTCACACAAAATATATTTGGAACTTGCCTTTAACTTA
CCTGAGGATTATTGGGACATTATGATATTGGGCTCTTCCGGAAAATGTCA
GTACATGAGGGGTGGAGGATATAGTGTCCGGGGGGTAGTGAAATATCTAC
AAAATTTACCTTGTCTGGGGGGTAAATTTGCTCTGTTCGGGGGTAATTTT
GCTCTGTTTGAGGGTAATTTTGAATATCCAGGGGGTCAAAAGTCACAATG
TCCGGGGGGGGGGGGGGGAAATTTNAACGTTTTACCCCCGTCTTTTTGAC
GTTTATGATTCGAACGTCAAAATTAGAAAACCCCATTCGGCGCGATGCGA
TTGTTTCGAGTGCAAACACTACCTCGTTTTGAAACCATTACCAAGGTGGT
TCAATCCCTTGAGCCTTCTAGTTTTACTTTCATAAATAAAGTAAACTACT
TTATCAAGTCCTCTGAGAATCATTTAAAATATAAATATTTTGAAAACGAG
GTAAGCTTTGCTCACGACATAATTTATGAAAAGGTCTATCCAGAGTATTG
TCAAACTGTACGACTGTACATCGTGTCATTTAATTCCTTTCTTTGTCAAA
AGAATACGATTCTCAACTTTCAACAAACCAATCAGAGAACAGTATTTTCA
TATTCTAACGAATCAAAATTTAGTTCATAGATTTTCTAATCAATAAGAGA
AGATCATTTTTAAATTTCTAACCAATCAGAGAATGGTACAACAAGGTTTC
TTTTCTTTTTCATCTTCCATCGCTTCAATTGTTATTTGACGTTCGAATTT
TGCACGTTTATCGCTCACATTATTATTCTTAAGAATCTCTTTTACACCAT
GTTCGAAAAGTTCTTTAACGTTATGCCCATTTTTTGCTGATGTTGAAAAT
TGTGCTGGTTGTTCGGGTAGCTCTGTGAAAAATTCTAACCCAGTCTCTAT
ATTTTGATGAATGTCTGACCCATGCTTGTCATATTTTGTCCCCACAACAA
TAAAAGCCACTTTTTTATCGTTTAATGTCTTTCGAGCTGAATCGTAATAC
CATTTCATCGAATCAATTGATTTTTGATTCCCGATTTCGTAAACAAGCAT
AAGGACATCAGATCTCGCGATATAAAGATCGTCCATTGTTGGGAATTGTC
GGGATCCGGCGATATCAATAATTGTAACATTGACTCGTTGATTCATGCAA
ATAATCGTTTTCATAAAGAAATCTTCCACAGTCGCTTGATAATTCTCGGG
AAAATCGTTATTCACCCACCGACGAATAAGTGCCGACTTTCCGATATCGA
CATCACCGAGTAGTAACATACCGACCGTATCTTTTCGTTTTAACGATTTT
AAAGCTGTTTTCCGACGACTATCCATGGTATCTGATAGAATAGCTATTTG
TCTGAGCCAGTGAATTATTTCTCCAGGTTTTTAGATTCAAAGATTATTTG
AATATTGCTTTTGCAAGCTCCTAAATCGAACGTCGTAACAAGTGAAACAA
AGTTAGTTGCACCTTCAGCCAAATTTACAATTAAAGCCAATTTTATCCGG
CGTTTACTTTTATCCTTAGCTTAGGCGACAAGTTTCAATTCCAAGTGTGT
AATCAAATATGTAAAGATAAAAGCTGAATCTTATCCAAGATATTGCAGTA
CACACTTACATACAACGTGATCAAATGATTTTAATTTTATCAAGGTTTAA
TATCTACAAATGAATAAAATGAATTAAAGATTACTTTCAAAAGTATGACA
GACAGACAAGAAAAATTGTATTTCGAATTAAAGTCATAATATTTTCATTT
ATGAGTTCTCCCATTTCTATTAAAATCTCCTATAGAGCGATCTAAAGCAC
TTCTTTTGAAGAGCAAGAACAACTTCTTCCAGGGCTACTTTAAAATTCTC
TCTATAAATGAAATAACCCCTGAGACATCATCTGTAAGACCTCCAAATTC
AAGTAAATACTCCTTAATTTCATTGTAAAAGAAAGTCTAATAAAAGTCAG
GAACGATTATGCAAGTTTAGTAAATGAGATAAATTCACACGCACAAACTA
CTTTATAATCATTCTCGAGATCACTTGAAAAAGTGTTTTTATCATGATGC
CACTTTCCAAACTCTGAGAGTGAGACTAGAATATAGAGAGTGAATTTAAA
AAAATACTCTGAATTATCAAATTTTCAATTTTCATCGATTTCAAAATCAG
TTGTGACACTCCTGTATCACGACTCCCGTAGAACTTCCTTCAACTTTCGT
TTTGTTCGCACAATATTTCATGACGTAATCTTTTCTTCAATCTGTCGCTC
ATTTCGCGCAAAAGTGGAAACCGGCCTTTAGTTATCCACAATTGCTTAAA
AATCCTCAAATGGTACAGAGGTTTGATGTTTCCACGGGCTCTCAAACCGT
TTTACTGAAACGATAGTCAAGCAAAATCATAATAAATATGGTAAGTCTCA
ATCAGTAAATTCACGAGAAATCAACCAAACCAATAAACGGAAAATACCAG
AGGTCAAAAGTAATACTTATTTCAGTATATAGCATACATGAGAAAATATG
TCGATGGGAAACTTTTTAATAAAAACAATTTGATAGACTGTATCAATTAC
TAACCTGCTTCAAATGATATTTTGATAGCCTCCACATCGTACTGAGAAAG
AAATACGATTCACTGATTGCACCCATACTGAGATCACTTAAAACAAGCTG
AGTTCTCTAAAGCTATTTTTTCCAGAAAATCATAAATGCCAGTTTTGCAC
TGTCTTACACAACTTAAGTCTCTGTTATTAAACGAAGGACACTCATTATA
CTGAAAGCTATGACGCTTTNTGGTGAGACGAGGGTGTAAGAATCAATTTA
AATGCTCTGCAGCGTCTGAAAAACTTGCCACGATAAATTTAGACCATCTT
AAAAAGATCTTCCATTTAAGTTCAATATCAACAGTATAAACAAATTTTCT
ATCGATAGACCTTCTCATAAATTATTAAGAGCAAAGACTACCTCGTTTTG
AAACCATTACCAAGGTGGTTTAAGCCCTTGAGCCTTCTAGTTTTACTTTT
GTAAATAAAGTAAACTACTTTATGGAATCCTCTGAGAATCATTTAAAATA
GAAATATTTTGAAAACGAGGTAAGCTTTGCTCGCGACATAATTTATTAAA
AGGTCTATCCAGAGTATAGTCGAACTGTACGACTGTACATCGTGTCATTT
AATTCCTTTCTTTGTCAATAGAATATGATTCTCAACTTTCAACAAACCAA
TCAGAGAGCAGTATTTTCATATTCTAACCAATCAAAATTTAGTTCATAGA
TTTTCTAACCAATCAGAGAAGATCATTTTTAAATTTCTAACCAATCAGAG
AATGGTACAACAAGGTTTCTTTTCTTTTTCATCTTCCATCGCTTCAATTG
TTATTTGACGTTCGAATTTTGCACGTTTATCGCTCACATTATTATTCTTA
AGAATCTCTTTTACACCATGTTCGAAAAGTTCTTTAACGTTATACCCATT
TTTTGCTGATGTTGAAAATTGTGCTGGTTGTTCGGGTAGCTCTGTGAAAA
ATTCTAACCCAGTCTCTATATTTTGATGAATGTCTGACCCATGCTTGTCA
TATTTTGTCCCCACAACAATAAAAGCCACTTTTTTATCGTTTAATGTCTT
TCGAGCTGAATCGTAATACCATTTCATCGAATCAATTGATTTTTGATTCC
CGATTTCGTAAACAAGCATAAGGACATCAGATCTCGCGATATAAAGATCG
TCCATTGTTGGGAATTGTCGGGATCCGGCGATATCAATAATTGTAACATT
GACTCGTTGATTCATGCAAATAATCGTTTTCATAAAGAAATCTTCCACAG
TCGCTTGATAATTCTCGGGAAAATCGTTATTCACCCACCGACGAATAAGT
GCCGACTTTCCGATATCGACATCACCGAGTAGTAACATACCGACCGTATC
TTTTCGTTTTAACGATTTTAAAGCTGTTTTCCGACGACTATCCATGGTAT
CTGATAGAATAGCTATTTGTCTGAGCCAGTGAATTATTTCTCCAAGTTTT
TAGATTCAAAGATTATTTGAAAATTGCTTTTCCAAGCTCCTGAATCGAAC
GTCGTAACAAGTTAAACAAAGTTAGTTGCACCTTCAGCCAAATTTACAAT
TAAAGCCAATTTTATCCGGCGATAACCTTTATCCTTAGCTTAGGCGACAA
GTTTCAGTTCCAAGTGTGTAATCAAAAATGTAGAGATAAAAGCTGAATCT
TATCCAAGATATTGCAATACACACTTACATACAACGTGATCAAATGATTT
TAATTTTATCAAGGTTTAATATCTACAAATGAATAAAATGAATTAAAGAT
TACATTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00066008-exon-scaffold_448-1575043694:798571..801244 | TCONS_00066008-exon-scaffold_448-1575043694:798571..801244 | Clytia hemisphaerica | exon |
| TCONS_00066008-exon-scaffold_448-1575043694:795785..795951 | TCONS_00066008-exon-scaffold_448-1575043694:795785..795951 | Clytia hemisphaerica | exon |
| TCONS_00066008-exon-scaffold_448-1510915933:798571..801244 | TCONS_00066008-exon-scaffold_448-1510915933:798571..801244 | Clytia hemisphaerica | exon |
| TCONS_00066008-exon-scaffold_448-1510915933:795785..795951 | TCONS_00066008-exon-scaffold_448-1510915933:795785..795951 | Clytia hemisphaerica | exon |
| TCONS_00066008-exon-scaffold_448-1491911889:798571..801244 | TCONS_00066008-exon-scaffold_448-1491911889:798571..801244 | Clytia hemisphaerica | exon |
| TCONS_00066008-exon-scaffold_448-1491911889:795785..795951 | TCONS_00066008-exon-scaffold_448-1491911889:795785..795951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:795785..801244 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00066008 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.006e-19 Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = -3
Query: 1952 LLGDVDIGKSALIRRWVNNDFPENYQATVEDFFMKTIICMNQRVNVTIIDIAGSRQFPTMDDLYIARSDVLMLVYEIGNQKSIDSMKWYYDSARKTLND-KKVAFIVVGTKYDKHGSDIHQNIETGLEFFTELPEQPAQFSTSAKNGHNVKELFE 2413
+ G +GKS+L+ R+V F E+Y TVED + + I C + I D GS QFP M L I++ +LVY I +++S++ +K Y+ + D + + ++VG K D+ S Q+ E T + A TSAK HNVKELF+
Sbjct: 12 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART---WKCAFMETSAKLNHNVKELFQ 163
The following BLAST results are available for this feature:
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