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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066005 ID=TCONS_00066005|Name=TCONS_00066005|organism=Clytia hemisphaerica|type=transcript|length=3071bp
TAACATTACTCTGAGTTCATTATTGTACAGTCTGGGAAGGATGTTGGACA
AGCGAGGGCCCTGTTGAATTTGCGAAAACATGACATGACATAAAACATTA
GATGTAAGAGAAAAACGTGCACCCAAAAGATTATAATTTGGGTATCTGGA
ACACTAATATAAATAGTCATGAGTTTTTTGTTTGCcaataaaaataagac
ttttcgTCCAAGGAGAAGTATCCCAGAAGGAACACATCAATATGATTTAT
TAAAACATGCTGAAGCTACTCTTGGATCAGGAAATCTTCGAAATGCTGTG
ATGCTACCTGAAGGCGAAGATCTAAATGAATGGGTTGCTGTCAATACCGT
TGACTTCTTCAATCAAATTAATATGTTATATGGAACCATAACAGAAGAAT
GCACCCCTGAAAGTTGTCCAGTCATGTCTGCTGGACCGAAATTTGAATAC
CTTTGGGCTGATGGTACCTCTATTAAGAAGCCTGTAAAATGTTCTGCACC
ACAATATATTGATTACCTAATGCAATGGGTTCAGGATCAGCTTGATGATG
AGACCTTATTTCCATCCAAGATTGGAGTACCATTCCCCAAGAATTTTTTG
AGTATCGCTAAAACCATGTTAAAACGTCTGTTCCGTGTTTATGCTCATAT
CTACCATCAACATTTCCCGCAAGTCGTCAGCTTGAAAGAAGAAGCTCATT
TGAATACGTCTTTCAAGCATTTTATCTACTTTGTGCAAGAGTTTAATTTG
ATTGAGAAAAGAGAGCTGGCTCCTTTGCAAGAATTGATCGATAGGCTAAT
TAACAAAGCCTCTGCATAAATTCCTCTTGATTTCACCTCCATTTTTTACT
GGAAGCTACACAATTTGTTATGAGTGATTATACCAAATGGGAATCAAATT
TTATTNTACTGGAAGCCACACAATTTGTTATGAGTGATTATACGAAATGg
gaatcaaattttatttttggaatatttttgaatgcaTTCATGATACCGTA
TAATAACTGTAACTTTCCAAGAGCACCTTATACCAACTGGAACTAAGGAA
CTGGTTTATTGTTTTGCTTCGTTAAATCGTAAATTTTTACTGGCTAATTA
CTCTGTGAAGTAGATAGATGTGTTATACTAAAATTGAGGAAACTGGTTAC
AGATGTTTGTAACCAAATGCCAAATTATTATGTTAATTCTGATggaattt
ttgccaaaacctTGATGtgataaaaaatcgaaaaatatttttttatatgg
tGGCATTATAACCCCCAGATGGATGATTgcgtaaaaaaatttttggttca
ATTACTAAGCTGTAATTATGTTTGGTTGAAAAGCTCGAAGCCAAGTCGTT
TTGGTTTTTTGGTTTGTTGGTTTATGTTCAAATGTTTATATATATAactg
aaaaataacaattttgttTATAACTGATTTTACAGTAGTTTGTAGTAAGT
TTGGACAGAATTTTTAGAATGTGCTTAAGAAAATGAATCAAGGCAACACA
TTTTTGTTCAACCAAAATAGTACTGTAGATTTTGCCAAGGACAAAAATTA
TGACCAGCTGCGGatttttttaattcactttCCAATGGTATGTAATACAT
CTAAGCCTAATTTTTTGTCAACTATTATTAAAATTATACAGAACTATCTT
GTGGACGAGTTTAAGATAGATTGGTTAAGATTTAATTCAGCTTTTCCTAT
CAATTccagtttttatattttttgtctttGGTATTTTATGAAGTACTATA
GTTTTCAATTGTGGCAAACTCATTCTAAAGCACAGTTAAGTCTCGACTTG
AATTTAATTGATAGAAAATCCTCTATAAAAATTCTCTCTAAAGATGTATT
TGTTTAACAGTGATTTAACAGGGATAAATTaaacacaaaaaataatattc
TGGGATTCTACAGTTACTTTACTTGTGAGATGACTTAATGGGGTCATCAC
TTGATGTGTacgaaaataaaattctcaaaaagcatttattgtttttttct
ttcttctttaatTCTATTGAAGTATGGTTTAGGAATAAGGTAGGATAAAA
CTTGGGATTAATTTCAATCTCATGGATTTTAGAGAGCATATGTTTTTCTC
TCATCGATCCActtactttttatatttttttgctcGAACATTACGTCACC
CCTTAGATTACGTCATATTCCCTTACTAAACTATGACGTAATAATCAGTG
GCTTTCAGTTTGTAAATAGTTAAACGAAAGTTTATCACCATTCGAAACAA
TGTTCTTCTGTGGTCCTTAGAATTTTAGTCTGTATCGCCGCTTTTGAGCC
TGAATTaaagccggtctccactttcgtgcaaaatgagcgaaaacttcttg
acgtttttgtaaggtctttggtcggttgaaaaatgaagcaattccattgg
gcaaatctgacgtaacggtttaaaaaagttgaacttctttcaacttttta
aggccggtctccactttcgcgcgaaagtaATCTTATGCAGGCAAAAtcga
ttgaaaaaaaaggtttcgCTCATTtttgcgcgaaagtggagaccgacctT
TAGCGGGAATTTCCCAACGTGatcctattcatgatatgcaccactggaga
gtcttctgagaacttttaaaattttccacccaatacgtcatttaaacaat
aaaaaacaatgacgtattgggtggaacaaaaataaaaaagtgaagTCATT
GCactggtgcatatcatgaatttgacGTAATATAATAAGGAACTTCAATA
CCATTACATAATGTTATCAGCGTTccgtatgtttttttttttgttttatt
tgaaaataattaattgATAAATAATTAGTTTCATAAATAGTTTTTATGAA
GTGAACTTATTTTTATGCTAAAACTAaatgattttttagaaaaaatacaa
attttctttttttttgtttcatttttttttcttctttaattaTTCACTAC
CTATATATTGCACTTTTTCATTCTTTCAAGcgattttttataactttttt
gttgttgtttagtttaatttcattctatcattgttagctttaaaacttaa
aaaatacttttcttcCCTTTA Run BLAST on NCBI protein sequence of TCONS_00066005-protein >TCONS_00066005-protein ID=TCONS_00066005-protein|Name=TCONS_00066005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MSFLFANKNKTFRPRRSIPEGTHQYDLLKHAEATLGSGNLRNAVMLPEGE
DLNEWVAVNTVDFFNQINMLYGTITEECTPESCPVMSAGPKFEYLWADGT
SIKKPVKCSAPQYIDYLMQWVQDQLDDETLFPSKIGVPFPKNFLSIAKTM
LKRLFRVYAHIYHQHFPQVVSLKEEAHLNTSFKHFIYFVQEFNLIEKREL
APLQELIDRLINKASA Run BLAST on NCBI transcript from alignment at scaffold_448:761233..765518- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066005 ID=TCONS_00066005|Name=TCONS_00066005|organism=Clytia hemisphaerica|type=transcript|length=4286bp|location=Sequence derived from alignment at scaffold_448:761233..765518- (Clytia hemisphaerica)
TAACATTACTCTGAGTTCATTATTGTACAGTCTGGGAAGGATGTTGGACA
AGCGAGGGCCCTGTTGAATTTGCGGTATGTACATGCACTTATATTTGTTA
CTTTTTAAATTTGATCTTGGATTGTTTCTCATATGTCAACTTTGTGTCTA
GGGTGACTTTGAGGTCTTTATTTAACTTCTTTTTATTTTTGATTAACGTT
GCTGTGTTGGAAAAGTAGCAAGAACTTCAGGGTGTCGTTTTTCCCGTAGG
CAAGGTGCTCAAGTTTAAGACCATTCATCTGCATGTTGTTGTCTTTTGTC
CATCTGTAAGAAAATGTTAAAACCCCTGTTTTGATATCTATGAGAAATTC
CGAAAATTTTCTTCCATTCCTTGGAATCCAACTACTCGGAAAAAGACTAA
GACCCCTGGACTCCCTGGAAATGTTAATCCACAATTACATGGGACTGATA
TAAGATGGAAGTGTCTATTGTCCATTGCACCATCAAACTTTTTTGGTAGG
CGACTGTTTCAGTACCAAATCATCCAATGTGTGTTAATTGTAAGCAACCT
ACGTTTTAAAATTTGTTTTGGGAAAGTTCCCAGACATCTGCACACAAAAT
TATGAGCACTTTTCAAGGATTAAAGGGTCACAAAAATGAAACTCTTCTTT
TAATTCAAGGCAATAATCATAAGATGAAATAAACATTAGAGGCGACTTAA
TATATTTAATAAATTAAATATTCAAAAATTACTACTTTCTGTATTTTAGA
AAACATGACATGACATAAAACATTAGATGTAAGAGAAAAACGTGCACCCA
AAAGATTATAATTTGGGTATCTGGAACACTAATATAAATAGTCATGAGTT
TTTTGTTTGCCAATAAAAATAAGACTTTTCGTCCAAGGAGAAGTATCCCA
GAAGGAACACATCAATATGATTTATTAAAACATGCTGAAGCTACTCTTGG
ATCAGGAAATCTTCGAAATGCTGTGATGCTACCTGAAGTATGATTTTCTT
TGATATTTTAGCATTTTCTAGTTGAAGAGGTTTACAGCATACAACTCCTA
TGTCTTTTTTCTCAAAAATGACGCTTTCGATAACTTTTGAACACGTGAAG
TAAATTTGAAGTATGATAGCTCAAAATTCAAGTTAGTCTTTCCTCCTTCG
AATAGCAAAAAGTTTTGATTTATAACATTTTCAGTTTTCTCGAAAATTAA
CTTCAACTTGTACACATTTTTGTATCACCCGGTACTTTTTATGGGACTAG
TTTTATATAGCAGAATTAATTTTTAAAGTGTAAGGGTGTCGCAGTAGTGT
TTTTGCAAAACTTATTTTGACAATTGAAAATCATTTTCTGTTGAAGCTAT
TTGCAACTTTTCAGTCGCACTTAAATGTAAGCTTGGCTGAAAAAAGATTA
GCCTCCCTAAAAAATTTGTTGTTGCTAATATTTGTCTTTTCATCTTTTCA
GGGCGAAGATCTAAATGAATGGGTTGCTGTCAATACCGTTGACTTCTTCA
ATCAAATTAATATGTTATATGGAACCATAACAGAAGAATGCACCCCTGAA
AGTTGTCCAGTCATGTCTGCTGGACCGAAATTTGAATACCTTTGGGCTGA
TGGTACCTCTATTAAGAAGCCTGTAAAATGTTCTGCACCACAATATATTG
ATTACCTAATGCAATGGGTTCAGGATCAGCTTGATGATGAGACCTTATTT
CCATCCAAGATTGGAGTACCATTCCCCAAGAATTTTTTGAGTATCGCTAA
AACCATGTTAAAACGTCTGTTCCGTGTTTATGCTCATATCTACCATCAAC
ATTTCCCGCAAGTCGTCAGCTTGAAAGAAGAAGCTCATTTGAATACGTCT
TTCAAGCATTTTATCTACTTTGTGCAAGAGTTTAATTTGATTGAGAAAAG
AGAGCTGGCTCCTTTGCAAGAATTGATCGATAGGCTAATTAACAAAGCCT
CTGCATAAATTCCTCTTGATTTCACCTCCATTTTTTACTGGAAGCTACAC
AATTTGTTATGAGTGATTATACCAAATGGGAATCAAATTTTATTNTACTG
GAAGCCACACAATTTGTTATGAGTGATTATACGAAATGGGAATCAAATTT
TATTTTTGGAATATTTTTGAATGCATTCATGATACCGTATAATAACTGTA
ACTTTCCAAGAGCACCTTATACCAACTGGAACTAAGGAACTGGTTTATTG
TTTTGCTTCGTTAAATCGTAAATTTTTACTGGCTAATTACTCTGTGAAGT
AGATAGATGTGTTATACTAAAATTGAGGAAACTGGTTACAGATGTTTGTA
ACCAAATGCCAAATTATTATGTTAATTCTGATGGAATTTTTGCCAAAACC
TTGATGTGATAAAAAATCGAAAAATATTTTTTTATATGGTGGCATTATAA
CCCCCAGATGGATGATTGCGTAAAAAAATTTTTGGTTCAATTACTAAGCT
GTAATTATGTTTGGTTGAAAAGCTCGAAGCCAAGTCGTTTTGGTTTTTTG
GTTTGTTGGTTTATGTTCAAATGTTTATATATATAACTGAAAAATAACAA
TTTTGTTTATAACTGATTTTACAGTAGTTTGTAGTAAGTTTGGACAGAAT
TTTTAGAATGTGCTTAAGAAAATGAATCAAGGCAACACATTTTTGTTCAA
CCAAAATANGTAAGTTTGGACAGAATTTTTAAAATGTGCTTAAGAAAATG
AATCAAGGCAACACATTTTTGTTCAACCAAAATAGTACTGTAGATTTTGC
CAAGGACAAAAATTATGACCAGCTGCGGATTTTTTTAATTCACTTTCCAA
TGGTATGTAATACATCTAAGCCTAATTTTTTGTCAACTATTATTAAAATT
ATACAGAACTATCTTGTGGACGAGTTTAAGATAGATTGGTTAAGATTTAA
TTCAGCTTTTCCTATCAATTCCAGTTTTTATATTTTTTGTCTTTGGTATT
TTATGAAGTACTATAGTTTTCAATTGTGGCAAACTCATTCTAAAGCACAG
TTAAGTCTCGACTTGAATTTAATTGATAGAAAATCCTCTATAAAAATTCT
CTCTAAAGATGTATTTGTTTAACAGTGATTTAACAGGGATAAATTAAACA
CAAAAAATAATATTCTGGGATTCTACAGTTACTTTACTTGTGAGATGACT
TAATGGGGTCATCACTTGATGTGTACGAAAATAAAATTCTCAAAAAGCAT
TTATTGTTTTTTTCTTTCTTCTTTAATTCTATTGAAGTATGGTTTAGGAA
TAAGGTAGGATAAAACTTGGGATTAATTTCAATCTCATGGATTTTAGAGA
GCATATGTTTTTCTCTCATCGATCCACTTACTTTTTATATTTTTTTGCTC
GAACATTACGTCACCCCTTAGATTACGTCATATTCCCTTACTAAACTATG
ACGTAATAATCAGTGGCTTTCAGTTTGTAAATAGTTAAACGAAAGTTTAT
CACCATTCGAAACAATGTTCTTCTGTGGTCCTTAGAATTTTAGTCTGTAT
CGCCGCTTTTGAGCCTGAATTAAAGCCGGTCTCCACTTTCGTGCAAAATG
AGCGAAAACTTCTTGACGTTTTTGTAAGGTCTTTGGTCGGTTGAAAAATG
AAGCAATTCCATTGGGCAAATCTGACGTAACGGTTTAAAAAAGTTGAACT
TCTTTCAACTTTTTAAGGCCGGTCTCCACTTTCGCGCGAAAGTAATCTTA
TGCAGGCAAAATCGATTGAAAAAAAAGGTTTCGCTCATTTTTGCGCGAAA
GTGGAGACCGACCTTTAGCGGGAATTTCCCAACGTGATCCTATTCATGAT
ATGCACCACTGGAGAGTCTTCTGAGAACTTTTAAAATTTTCCACCCAATA
CGTCATTTAAACAATAAAAAACAATGACGTATTGGGTGGAACAAAAATAA
AAAAGTGAAGTCATTGCACTGGTGCATATCATGAATTTGACGTAATATAA
TAAGGAACTTCAATACCATTACATAATGTTATCAGCGTTCCGTATGTTTT
TTTTTTTGTTTTATTTGAAAATAATTAATTGATAAATAATTAGTTTCATA
AATAGTTTTTATGAAGTGAACTTATTTTTATGCTAAAACTAAATGATTTT
TTAGAAAAAATACAAATTTTCTTTTTTTTTGTTTCATTTTTTTTTCTTCT
TTAATTATTCACTACCTATATATTGCACTTTTTCATTCTTTCAAGCGATT
TTTTATAACTTTTTTGTTGTTGTTTAGTTTAATTTCATTCTATCATTGTT
AGCTTTAAAACTTAAAAAATACTTTTCTTCCCTTTA Coding sequence (CDS) from alignment at scaffold_448:761233..765518- >TCONS_00066005 ID=TCONS_00066005|Name=TCONS_00066005|organism=Clytia hemisphaerica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_448:761233..765518- (Clytia hemisphaerica)
GGCGAAGATCTAAATGAATGGGTTGCTGTCAATACCGTTGACTTCTTCAA
TCAAATTAATATGTTATATGGAACCATAACAGAAGAATGCACCCCTGAAA
GTTGTCCAGTCATGTCTGCTGGACCGAAATTTGAATACCTTTGGGCTGAT
GGTACCTCTATTAAGAAGCCTGTAAAATGTTCTGCACCACAATATATTGA
TTACCTAATGCAATGGGTTCAGGATCAGCTTGATGATGAGACCTTATTTC
CATCCAAGATTGGAGTACCATTCCCCAAGAATTTTTTGAGTATCGCTAAA
ACCATGTTAAAACGTCTGTTCCGTGTTTATGCTCATATCTACCATCAACA
TTTCCCGCAAGTCGTCAGCTTGAAAGAAGAAGCTCATTTGAATACGTCTT
TCAAGCATTTTATCTACTTTGTGCAAGAGTTTAATTTGATTGAGAAAAGA
GAGCTGGCTCCTTTGCAAGAATTGATCGATAGGCTAATTAACAAAGCCTC
TGCATAAATGAGTTTTTTGTTTGCCAATAAAAATAAGACTTTTCGTCCAA
GGAGAAGTATCCCAGAAGGAACACATCAATATGATTTATTAAAACATGCT
GAAGCTACTCTTGGATCAGGAAATCTTCGAAATGCTGTGATGCTACCTGA
AGGCGAAGATCTAAATGAATGGGTTGCTGTCAATACCGTTGACTTCTTCA
ATCAAATTAATATGTTATATGGAACCATAACAGAAGAATGCACCCCTGAA
AGTTGTCCAGTCATGTCTGCTGGACCGAAATTTGAATACCTTTGGGCTGA
TGGTACCTCTATTAAGAAGCCTGTAAAATGTTCTGCACCACAATATATTG
ATTACCTAATGCAATGGGTTCAGGATCAGCTTGATGATGAGACCTTATTT
CCATCCAAGATTGGAGTACCATTCCCCAAGAATTTTTTGAGTATCGCTAA
AACCATGTTAAAACGTCTGTTCCGTGTTTATGCTCATATCTACCATCAAC
ATTTCCCGCAAGTCGTCAGCTTGAAAGAAGAAGCTCATTTGAATACGTCT
TTCAAGCATTTTATCTACTTTGTGCAAGAGTTTAATTTGATTGAGAAAAG
AGAGCTGGCTCCTTTGCAAGAATTGATCGATAGGCTAATTAACAAAGCCT
CTGCATAAATGAGTTTTTTGTTTGCCAATAAAAATAAGACTTTTCGTCCA
AGGAGAAGTATCCCAGAAGGAACACATCAATATGATTTATTAAAACATGC
TGAAGCTACTCTTGGATCAGGAAATCTTCGAAATGCTGTGATGCTACCTG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066005-exon-scaffold_448-1575043694:765445..765518 | TCONS_00066005-exon-scaffold_448-1575043694:765445..765518 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1575043694:764532..764769 | TCONS_00066005-exon-scaffold_448-1575043694:764532..764769 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1575043694:762888..764067 | TCONS_00066005-exon-scaffold_448-1575043694:762888..764067 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1575043694:761233..762811 | TCONS_00066005-exon-scaffold_448-1575043694:761233..762811 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1510915933:765445..765518 | TCONS_00066005-exon-scaffold_448-1510915933:765445..765518 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1510915933:764532..764769 | TCONS_00066005-exon-scaffold_448-1510915933:764532..764769 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1510915933:762888..764067 | TCONS_00066005-exon-scaffold_448-1510915933:762888..764067 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1510915933:761233..762811 | TCONS_00066005-exon-scaffold_448-1510915933:761233..762811 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1491911889:765445..765518 | TCONS_00066005-exon-scaffold_448-1491911889:765445..765518 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1491911889:764532..764769 | TCONS_00066005-exon-scaffold_448-1491911889:764532..764769 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1491911889:762888..764067 | TCONS_00066005-exon-scaffold_448-1491911889:762888..764067 | Clytia hemisphaerica | exon |
| TCONS_00066005-exon-scaffold_448-1491911889:761233..762811 | TCONS_00066005-exon-scaffold_448-1491911889:761233..762811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:761233..765518 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005301 | MOB_kinase_act_fam |
Blast
BLAST of TCONS_00066005 vs. Swiss-Prot (Human)
Match: MOB1B (MOB kinase activator 1B OS=Homo sapiens GN=MOB1B PE=1 SV=3) HSP 1 Score: 385.571 bits (989), Expect = 6.576e-126 Identity = 178/214 (83.18%), Postives = 203/214 (94.86%), Query Frame = 1
Query: 169 MSFLFANKN-KTFRPRRSIPEGTHQYDLLKHAEATLGSGNLRNAVMLPEGEDLNEWVAVNTVDFFNQINMLYGTITEECTPESCPVMSAGPKFEYLWADGTSIKKPVKCSAPQYIDYLMQWVQDQLDDETLFPSKIGVPFPKNFLSIAKTMLKRLFRVYAHIYHQHFPQVVSLKEEAHLNTSFKHFIYFVQEFNLIEKRELAPLQELIDRLINK 807
MSFLF +++ KTF+P+++IPEG+HQY+LLKHAEATLGSGNLR AVMLPEGEDLNEWVAVNTVDFFNQINMLYGTIT+ CT ESCPVMSAGPK+EY WADGT+IKKP+KCSAP+YIDYLM WVQDQLDDETLFPSKIGVPFPKNF+S+AKT+LKRLFRVYAHIYHQHF V+ L+EEAHLNTSFKHFI+FVQEFNLI++RELAPLQELI++L +K
Sbjct: 1 MSFLFGSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSGNLRMAVMLPEGEDLNEWVAVNTVDFFNQINMLYGTITDFCTEESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDPVIQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLTSK 214
The following BLAST results are available for this feature:
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