TCONS_00065970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065970
Unique NameTCONS_00065970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065970 ID=TCONS_00065970|Name=TCONS_00065970|organism=Clytia hemisphaerica|type=transcript|length=1639bp
TTTGACTAACATTGTAtgttcttttttttatctttttcagataattaaat
aaaaataacgaataagaaaatagaaaattaactgaaaaaaCAGCAGACAA
GATTTCAGTATGTCAAGGATTTTGAGTTGATGAGCCTTTCAGAGTTATGG
AGAAGCTTGTATTAGATATTGAAAGTATATCACGGCTTGCAACGAGACAG
ACATCAGTCAAAGAGTTTGCTACTGTGTTAGAACAGTTGGACGTTTATTC
CGGTAAGATCAGAGAGAAATTAAAGGAACCAAATCTACCTCAGTTACATA
GAGACTCTTTAAGAGAAATTCAGAAATGTATCTCTCAGAtaatcaaagaa
aatcaacaaacttCTAAACAGGAAGATAACCTGCCACAGAgccaagaaaa
agaagaacaaagagAACGCGCGATAGGACAGACTATCATCAAAGCGGGAG
AAGTGAGATTTCAAGATATCGCTGGCCTAGACGTGGTCAAATCTCTTTTA
CATGAAGCTGTTATATTACCGGTGCAATACCCTCATCTTTTCACGGGGAA
AGTGAAACCATGGAAAAGTATTCTGTTGTATGGACCACCCGGAACTGGGA
AGTCAACGATCGCTCACGCAGTTTCAACAGAGGCCAATTGTACCTTCTAT
TCTTTATCTAGCTCTGATCTTCTCTCCTCTTGGTTTGGAGAAAGTGAGAA
ATTGATTAAAGAGCTCTTCTCCCAAGCTAGAAGCAACCCACGTGCTATCA
TCTTTATTGATGAGATTGATAGTATTTGTAGGAAACGATCAAGCAAGGAA
GAAGAAACTACACGCCGTATAAAAAACGAACTTTTAAAACAAATGGATGG
GTTCAGCAGAACATCTACATCTGCTTCTCCATCCGACGAGCCTAAGAAAC
ATCTCTTCGTTTTATGTGCTACAAACTGTCCTTGGGAACTCGATACAGCA
TTCTTACGTCGATTTAGTAAACGGATATACATCCCTCTACCGGATGCGAA
TTCGCGTAAACAGCTATTTCGCATCCATTTAAAAGACGTTGAAATGAGTA
TAGATGATTCAGATTATGACCAACTTGTCGATAAAACGGATGGTTATTCA
GGAAGTGATATCTCGAATTGTATTTCTGAAGCTGTTATGGAGCCGATTCG
GGAATTAAGAGATTGCTCAACGTGGAAATGGAACGATTCGAAAATGTCAC
TTTCTCCAACGATTAAAAGCGACGCTAGCGCTATATCATTGCGCCTGGAG
AATATACCACGTGAAAAAGTTCAACCTCGTAAATTAAATACGAAAGATTT
GTTTCACTCGATTTCGTTGAATAAGAAAACAGTATCGCAAGAAGAAACTG
TCCGATTTCAACAATTTACTGAAGATTTCGGACAAAATGGCTGATCAGGA
TTTCATTTAATTAAAAGTGGTAACTTAGCCTCTACTAAGCGACTACCAGT
TTCCATGATTAACAAACAACGGTTCGTTAGTGGTCAAGGAACTGGCTAAG
GTAAATAATATTGACCAGTTTGagttggcacttaaagggttaacatATTT
ATATCAGtatgttggacggtgaaaaagaatgcggctattatattttgatt
tttcccgacatgtttcggactcggtccgttctcaaggga
Run BLAST on NCBI

protein sequence of TCONS_00065970-protein

>TCONS_00065970-protein ID=TCONS_00065970-protein|Name=TCONS_00065970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MEKLVLDIESISRLATRQTSVKEFATVLEQLDVYSGKIREKLKEPNLPQL
HRDSLREIQKCISQIIKENQQTSKQEDNLPQSQEKEEQRERAIGQTIIKA
GEVRFQDIAGLDVVKSLLHEAVILPVQYPHLFTGKVKPWKSILLYGPPGT
GKSTIAHAVSTEANCTFYSLSSSDLLSSWFGESEKLIKELFSQARSNPRA
IIFIDEIDSICRKRSSKEEETTRRIKNELLKQMDGFSRTSTSASPSDEPK
KHLFVLCATNCPWELDTAFLRRFSKRIYIPLPDANSRKQLFRIHLKDVEM
SIDDSDYDQLVDKTDGYSGSDISNCISEAVMEPIRELRDCSTWKWNDSKM
SLSPTIKSDASAISLRLENIPREKVQPRKLNTKDLFHSISLNKKTVSQEE
TVRFQQFTEDFGQNG
Run BLAST on NCBI

transcript from alignment at scaffold_448:475152..478699-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065970 ID=TCONS_00065970|Name=TCONS_00065970|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at scaffold_448:475152..478699- (Clytia hemisphaerica)
TTTGACTAACATTGTATGTTCTTTTTTTTATCTTTTTCAGATAATTAAAT
AAAAATAACGAATAAGAAAATAGAAAATTAACTGAAAAAACAGCAGACAA
GATTTCAGTATGTCAAGGATTTTGAGTTGATGAGCCTTTCAGAGTTATGG
AGAAGCTTGTATTAGATATTGAAAGTATATCACGGCTTGCAACGAGACAG
ACATCAGTCAAAGAGTTTGCTACTGTGTTAGAACAGTTGGACGTTTATTC
CGGTAAGATCAGAGAGAAATTAAAGGAACCAAATCTACCTCAGTTACATA
GAGACTCTTTAAGAGAAATTCAGAAATGTATCTCTCAGATAATCAAAGAA
AATCAACAAACTTCTAAACAGGAAGATAACCTGCCACAGAGCCAAGAAAA
AGAAGAACAAAGAGAACGCGCGATAGGACAGACTATCATCAAAGCGGGAG
AAGTGAGATTTCAAGATATCGCTGGCCTAGACGTGGTCAAATCTCTTTTA
CATGAAGCTGTTATATTACCGGTGCAATACCCTCATCTTTTCACGGGGAA
AGTGAAACCATGGAAAAGTATTCTGTTGTATGGACCACCCGGTATGAATG
AATTTTTTATATTTATTCGTTTTAGTCCTTGTTTTCTATCATCAAGTAAT
TTTTTTTAGATCTTTATGACATTTTCATCGCCCAAATAAGGCAATTCTGT
AGTCTTAATTGGCCCCATTTATCTCAATTAATTAGACTTGATGCTTTCGC
TGTTAATCACCACGGGGCACTCGGTGTGAAGCGTTTTTAAGTCATATTTT
AGACAGCCGACTATCTATTCGTTCCTCTATGAAGTTAGATCGCCGCCAAA
ATTCGATCCTTCAAGTCGTCCCGTCGTACTAGAAGTCGTCCCGTCGCAAT
TTTCGGTAGTCGAATCATCCCAAGTTTCAAGTCCTCCCGTCGCACTAGAA
GTTCGCAGGTCGTAATTCTTTTAAGTCGAGTCATACCAAGTTTCTAGTGG
TTCCTATCAGAAGTTAACTCGTCGGAACTTGGTACATGTTCCAATCATGT
ACGTTTAACTGTTCTCATAAGTGTTCATGTCATCCATCAGGTATATCATG
GAGATAAAAATATAAATTCACATTGTTTTCAAAATTTTGACATGGCTCTA
ATCAATAAGTAAATTTCCACACGTGTGTTTCCACCAGCTTCCATTTTGAA
CATTGAAGTTTTCCCTGGGTGAGCTCTGCACGTGCACAAAAACTGCACAC
CACACGAACATAACATTATCTCCACAATATTTTGATTTTTGATATACAAA
ACAATAAAGTTTTTTTCCAGAATAGCCTAGAGTCCAACTTTTTGGGATGA
GTCGACTGCCGAAATTTGCGACGAGTCAACTTCTGAAGCAACGACTCGAC
TTAAAATTTGGAATGTTTCGACTTCCAAAAGATTCCGACTTGCAAACTTC
TAATGCGACCTGCGGACTTCTAGTGCGACGGGACGACTTCTAGTACGTCG
GGACGACTTGAAGGATCGAATTTTGGCGGTGATCTAACTTCATAGTCCTC
TCCATATTCTAATTCAGAGGCCAAATTAGTGATAATAGAGTATATACAAT
TATTGCTTTATAAATAAGAACTGGAAAAGAAAGATTTTATGCTCAAAGTG
CCAAAATTGCAAGAACAGCCTCAAAAAATATATATTGGATTCTTAAAAGG
AAGAGTGTATTGAAAGGAATTTGTTTGAATTTATTTCTCAGGAACTGGGA
AGTCAACGATCGCTCACGCAGTTTCAACAGAGGCCAATTGTACCTTCTAT
TCTTTATCTAGCTCTGATCTTCTCTCCTCTTGGTTTGGAGAAAGTGAGAA
ATTGATTAAAGAGCTCTTCTCCCAAGCTAGAAGCAACCCACGTGCTATCA
TCTTTATTGATGAGATTGATAGTATTTGTAGGAAACGATCAAGCAAGGTA
CTGCGGTAACATTTCGAGAATTTGGTAACCCAGGGGTGATGTTCAACGTT
TGATGGTTTCCCTTAATATTTATGTCAAAAATATAAATTTCTTCTTGAAT
TTTCGGCAAATTAAAGTAAGATAAAAACAAAAACAAAGTTCTATTAAATT
GAAGAATCTCTTTTTTACAAAGGCTGCAAGGATTGGTGTTTTGTGTTTAA
TGGGTTGAATATGATTGATAGATTTTTTAGCCATTAGGAAAACGTCAACC
GCGATTTGAGATGCCTTTTTTATTGGTGCTATCAAAAGGTGCATGGGTTG
CAGTGCTCAAAAGGGTATCTTTATCTACTGGCAGTATCCAGTCTAACACT
TGTGTGACGTACTTTTCTTCTGGAATGGCTGTTTTTCTATGCCTTACTTT
TCTGTAGGGGAGAAATTGGTGACAAAAACTTTTTTTATTTCCACAGGAAG
AAGAAACTACACGCCGTATAAAAAACGAACTTTTAAAACAAATGGATGGG
TTCAGCAGAACATCTACATCTGCTTCTCCATCCGACGAGCCTAAGAAACA
TCTCTTCGTTTTATGTGCTACAAACTGTCCTTGGGAACTCGATACAGCAT
TCTTACGTCGATTTAGTAAACGGATATACATCCCTCTACCGGATGCGAAT
TCGCGTAAACAGCTATTTCGCATCCATTTAAAAGACGTTGAAATGAGTAT
AGATGATTCAGATTATGACCAACTTGTCGATAAAACGGATGGTTATTCAG
GAAGTGATATCTCGAATTGTATTTCTGAAGCTGTTATGGAGCCGATTCGG
GAATTAAGAGATTGCTCAACGTGGAAATGGAACGATTCGAAAATGTCACT
TTCTCCAACGATTAAAAGCGACGCTAGCGCTATATCATTGCGCCTGGAGA
ATATACCACGTGAAAAAGTTCAACCTCGTAAATTAAATACGAAAGATTTG
TTTCACTCGATTTCGTTGAATAAGAAAACAGTATCGCAAGAAGAAACTGT
CCGATTTCAACAATTTACTGAAGATTTCGGACAAAATGGCTGATCAGGTC
AGTGTCACTGAAAATTCAACCTCGGCAAGATATTTGTTTTGAAAATTATT
GCTGATCAGATTTTTAACAAATGCTTTCCGACGATACTATCAGAGTGCCG
ACAAGTGTCCCTTTTACTTTGAGTCTTCAAAGAAGGGCTGTTCATTCCAG
CTTGGTCACATCACATTTCTCAGATATTCAAACTCAAGTAGGGCAAACTC
CTTGACCTTGCTCTTTATTTTCACATGTTTTAAATCTGTAAATTTATCAG
AATTGTACCCATATGATTGATGTTATATTTCTTTAATTTATTCTTACATT
ACGCCAGGATTTCATTTAATTAAAAGTGGTAACTTAGCCTCTACTAAGCG
ACTACCAGTTTCCATGATTAACAAACAACGGTTCGTTAGTGGTCAAGGAA
CTGGCTAAGGTAAATAATATTGACCAGTTTGAGTTGGCACTTAAAGGGTT
AACATATTTATATCAGTATGTTGGACGGTGAAAAAGAATGCGGCTATTAT
ATTTTGATTTTTCCCGACATGTTTCGGACTCGGTCCGTTCTCAAGGGA

Coding sequence (CDS) from alignment at scaffold_448:475152..478699-

>TCONS_00065970 ID=TCONS_00065970|Name=TCONS_00065970|organism=Clytia hemisphaerica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_448:475152..478699- (Clytia hemisphaerica)
GAAGAAGAAACTACACGCCGTATAAAAAACGAACTTTTAAAACAAATGGA
TGGGTTCAGCAGAACATCTACATCTGCTTCTCCATCCGACGAGCCTAAGA
AACATCTCTTCGTTTTATGTGCTACAAACTGTCCTTGGGAACTCGATACA
GCATTCTTACGTCGATTTAGTAAACGGATATACATCCCTCTACCGGATGC
GAATTCGCGTAAACAGCTATTTCGCATCCATTTAAAAGACGTTGAAATGA
GTATAGATGATTCAGATTATGACCAACTTGTCGATAAAACGGATGGTTAT
TCAGGAAGTGATATCTCGAATTGTATTTCTGAAGCTGTTATGGAGCCGAT
TCGGGAATTAAGAGATTGCTCAACGTGGAAATGGAACGATTCGAAAATGT
CACTTTCTCCAACGATTAAAAGCGACGCTAGCGCTATATCATTGCGCCTG
GAGAATATACCACGTGAAAAAGTTCAACCTCGTAAATTAAATACGAAAGA
TTTGTTTCACTCGATTTCGTTGAATAAGAAAACAGTATCGCAAGAAGAAA
CTGTCCGATTTCAACAATTTACTGAAGATTTCGGACAAAATGGCTGAGAA
CTGGGAAGTCAACGATCGCTCACGCAGTTTCAACAGAGGCCAATTGTACC
TTCTATTCTTTATCTAGCTCTGATCTTCTCTCCTCTTGGTTTGGAGAAAG
TGAGAAATTGATTAAAGAGCTCTTCTCCCAAGCTAGAAGCAACCCACGTG
CTATCATCTTTATTGATGAGATTGATAGTATTTGTAGGAAACGATCAAGC
AAGATGGAGAAGCTTGTATTAGATATTGAAAGTATATCACGGCTTGCAAC
GAGACAGACATCAGTCAAAGAGTTTGCTACTGTGTTAGAACAGTTGGACG
TTTATTCCGGTAAGATCAGAGAGAAATTAAAGGAACCAAATCTACCTCAG
TTACATAGAGACTCTTTAAGAGAAATTCAGAAATGTATCTCTCAGATAAT
CAAAGAAAATCAACAAACTTCTAAACAGGAAGATAACCTGCCACAGAGCC
AAGAAAAAGAAGAACAAAGAGAACGCGCGATAGGACAGACTATCATCAAA
GCGGGAGAAGTGAGATTTCAAGATATCGCTGGCCTAGACGTGGTCAAATC
TCTTTTACATGAAGCTGTTATATTACCGGTGCAATACCCTCATCTTTTCA
CGGGGAAAGTGAAACCATGGAAAAGTATTCTGTTGTATGGACCACCCGGA
AGAAGAAACTACACGCCGTATAAAAAACGAACTTTTAAAACAAATGGATG
GGTTCAGCAGAACATCTACATCTGCTTCTCCATCCGACGAGCCTAAGAAA
CATCTCTTCGTTTTATGTGCTACAAACTGTCCTTGGGAACTCGATACAGC
ATTCTTACGTCGATTTAGTAAACGGATATACATCCCTCTACCGGATGCGA
ATTCGCGTAAACAGCTATTTCGCATCCATTTAAAAGACGTTGAAATGAGT
ATAGATGATTCAGATTATGACCAACTTGTCGATAAAACGGATGGTTATTC
AGGAAGTGATATCTCGAATTGTATTTCTGAAGCTGTTATGGAGCCGATTC
GGGAATTAAGAGATTGCTCAACGTGGAAATGGAACGATTCGAAAATGTCA
CTTTCTCCAACGATTAAAAGCGACGCTAGCGCTATATCATTGCGCCTGGA
GAATATACCACGTGAAAAAGTTCAACCTCGTAAATTAAATACGAAAGATT
TGTTTCACTCGATTTCGTTGAATAAGAAAACAGTATCGCAAGAAGAAACT
GTCCGATTTCAACAATTTACTGAAGATTTCGGACAAAATGGCTGAGAACT
GGGAAGTCAACGATCGCTCACGCAGTTTCAACAGAGGCCAATTGTACCTT
CTATTCTTTATCTAGCTCTGATCTTCTCTCCTCTTGGTTTGGAGAAAGTG
AGAAATTGATTAAAGAGCTCTTCTCCCAAGCTAGAAGCAACCCACGTGCT
ATCATCTTTATTGATGAGATTGATAGTATTTGTAGGAAACGATCAAGCAA
GATGGAGAAGCTTGTATTAGATATTGAAAGTATATCACGGCTTGCAACGA
GACAGACATCAGTCAAAGAGTTTGCTACTGTGTTAGAACAGTTGGACGTT
TATTCCGGTAAGATCAGAGAGAAATTAAAGGAACCAAATCTACCTCAGTT
ACATAGAGACTCTTTAAGAGAAATTCAGAAATGTATCTCTCAGATAATCA
AAGAAAATCAACAAACTTCTAAACAGGAAGATAACCTGCCACAGAGCCAA
GAAAAAGAAGAACAAAGAGAACGCGCGATAGGACAGACTATCATCAAAGC
GGGAGAAGTGAGATTTCAAGATATCGCTGGCCTAGACGTGGTCAAATCTC
TTTTACATGAAGCTGTTATATTACCGGTGCAATACCCTCATCTTTTCACG
GGGAAAGTGAAACCATGGAAAAGTATTCTGTTGTATGGACCACCCGGAAG
AAGAAACTACACGCCGTATAAAAAACGAACTTTTAAAACAAATGGATGGG
TTCAGCAGAACATCTACATCTGCTTCTCCATCCGACGAGCCTAAGAAACA
TCTCTTCGTTTTATGTGCTACAAACTGTCCTTGGGAACTCGATACAGCAT
TCTTACGTCGATTTAGTAAACGGATATACATCCCTCTACCGGATGCGAAT
TCGCGTAAACAGCTATTTCGCATCCATTTAAAAGACGTTGAAATGAGTAT
AGATGATTCAGATTATGACCAACTTGTCGATAAAACGGATGGTTATTCAG
GAAGTGATATCTCGAATTGTATTTCTGAAGCTGTTATGGAGCCGATTCGG
GAATTAAGAGATTGCTCAACGTGGAAATGGAACGATTCGAAAATGTCACT
TTCTCCAACGATTAAAAGCGACGCTAGCGCTATATCATTGCGCCTGGAGA
ATATACCACGTGAAAAAGTTCAACCTCGTAAATTAAATACGAAAGATTTG
TTTCACTCGATTTCGTTGAATAAGAAAACAGTATCGCAAGAAGAAACTGT
CCGATTTCAACAATTTACTGAAGATTTCGGACAAAATGGCTGAGAACTGG
GAAGTCAACGATCGCTCACGCAGTTTCAACAGAGGCCAATTGTACCTTCT
ATTCTTTATCTAGCTCTGATCTTCTCTCCTCTTGGTTTGGAGAAAGTGAG
AAATTGATTAAAGAGCTCTTCTCCCAAGCTAGAAGCAACCCACGTGCTAT
CATCTTTATTGATGAGATTGATAGTATTTGTAGGAAACGATCAAGCAAGA
TGGAGAAGCTTGTATTAGATATTGAAAGTATATCACGGCTTGCAACGAGA
CAGACATCAGTCAAAGAGTTTGCTACTGTGTTAGAACAGTTGGACGTTTA
TTCCGGTAAGATCAGAGAGAAATTAAAGGAACCAAATCTACCTCAGTTAC
ATAGAGACTCTTTAAGAGAAATTCAGAAATGTATCTCTCAGATAATCAAA
GAAAATCAACAAACTTCTAAACAGGAAGATAACCTGCCACAGAGCCAAGA
AAAAGAAGAACAAAGAGAACGCGCGATAGGACAGACTATCATCAAAGCGG
GAGAAGTGAGATTTCAAGATATCGCTGGCCTAGACGTGGTCAAATCTCTT
TTACATGAAGCTGTTATATTACCGGTGCAATACCCTCATCTTTTCACGGG
GAAAGTGAAACCATGGAAAAGTATTCTGTTGTATGGACCACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041323XLOC_041323Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065970-proteinTCONS_00065970-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065970-exon-scaffold_448-1575043694:478109..478699TCONS_00065970-exon-scaffold_448-1575043694:478109..478699Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1575043694:476753..476958TCONS_00065970-exon-scaffold_448-1575043694:476753..476958Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1575043694:475703..476303TCONS_00065970-exon-scaffold_448-1575043694:475703..476303Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1575043694:475152..475392TCONS_00065970-exon-scaffold_448-1575043694:475152..475392Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1510915933:478109..478699TCONS_00065970-exon-scaffold_448-1510915933:478109..478699Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1510915933:476753..476958TCONS_00065970-exon-scaffold_448-1510915933:476753..476958Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1510915933:475703..476303TCONS_00065970-exon-scaffold_448-1510915933:475703..476303Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1510915933:475152..475392TCONS_00065970-exon-scaffold_448-1510915933:475152..475392Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1491911889:478109..478699TCONS_00065970-exon-scaffold_448-1491911889:478109..478699Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1491911889:476753..476958TCONS_00065970-exon-scaffold_448-1491911889:476753..476958Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1491911889:475703..476303TCONS_00065970-exon-scaffold_448-1491911889:475703..476303Clytia hemisphaericaexon
TCONS_00065970-exon-scaffold_448-1491911889:475152..475392TCONS_00065970-exon-scaffold_448-1491911889:475152..475392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:475152..478699 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	9.74874e-05	0	4.55407e-08	0	0	0	0.902345	1.91632	2.35265	0.259786	0.698894	0.0383137	0	0.410778	0.105631	1.17343	1.09984	0	0.350394	0.000544834	0.555062	1.07583e-07	0	0	0	0.350522	0.0126892	0.717098	0.248227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR015415Vps4_C
IPR003959ATPase_AAA_core
IPR003960ATPase_AAA_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00065970 vs. Swiss-Prot (Human)
Match: VPS4A (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 2.528e-92
Identity = 165/414 (39.86%), Postives = 251/414 (60.63%), Query Frame = 3 
Query:  198 QTSVKEFATVLEQLDVYSGKIREKLKEPNLPQLHR-----DSLREIQKCISQIIKENQQTSKQEDNLPQSQ--EKEEQRERAIGQTIIKAGEVRFQDIAGLDVVKSLLHEAVILPVQYPHLFTGKVKPWKSILLYGPPGTGKSTIAHAVSTEA-NCTFYXXXXXXXXXXWFGESEKLIKELFSQARSNPRAIIFIDEIDSICRKRSSKEEETTRRIKNELLKQMDGFSRTSTSASPSDEPKKHLFVLCATNCPWELDTAFLRRFSKRIYIPLPDANSRKQLFRIHLKDVEMSIDDSDYDQLVDKTDGYSGSDISNCISEAVMEPIRELRD-------CSTWKWNDSKM---SLSPTIKSDASAISLRLENIPREKVQPRKLNTKDLFHSISLNKKTVSQEETVRFQQFTEDFGQ 1385
            Q +V+ F   + + + +S K +E ++   +  L R     D LR  +K   + +KENQ   K  D+  +    EK++ +E+ +G  +++   +R+ D+AGL+  K  L EAVILP+++PHLFTGK  PW+ ILL+GPPGTGKS +A AV+TEA N TF+S+SSSDL+S W GESEKL+K LF  AR +  +IIFIDE+DS+C  R+  E E  RRIK E L QM G    +              VL ATN PW LD+A  RRF KRIYIPLP+  +R Q+FR+HL     ++ D++  +L  KT+GYSG+DIS  + +++M+P+R+++        C   + N S M    L+P    D  A+ +   ++P +K+    +   D+  S++  + TV+ ++ ++ ++F+EDFGQ
Sbjct:   33 QHAVEYFLHAI-KYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGT----------LVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQ 435
The following BLAST results are available for this feature:
BLAST of TCONS_00065970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS4A2.528e-9239.86Vacuolar protein sorting-associated protein 4A OS=... [more]
back to top