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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065930 ID=TCONS_00065930|Name=TCONS_00065930|organism=Clytia hemisphaerica|type=transcript|length=2801bp
ATTAAACCTTgataaaattaaaatcatttgaTCACGTTGTATGTAAGTGT
GTATTGCAATATCTTGGATAAGATTCAGCTTTTATCTCTACATATTTGAT
TACACACTTGGAATTGAAACTTGTCGCCTAAGCTAAGGATAAAAGTAAAC
GCCGgataaaattggctttaattGTAAATTTGGCTGAAGGTGCAACTAAC
TTTGTTTCACTTGTTACGACGTTCGATTTAGGAGCTTGCAAAAGCAATAT
TCAAATAATCTTTGAATCTAAAAACCTGGAGAAATAATTCACTGGCTCAG
ACAAATAGCTATTCTATCAGATACCATGGATAGTCGTCGGAAAACAGCTT
TAAAATCGTTAAAACGAAAAGATACGGTCGGTATGTTACTACTCGGTGAT
GTCGATATCGGAAAGTCGGCACTTATTCGTCGGTGGGTGAATAACGATTT
TCCCGAGAATTATCAAGCGACTGTGGAAGATTTCTTTATGAAAACGATTA
TTTGCATGAATCAACGAGTCAATGTTACAATTATTGATATCGCCGGATCC
CGACAATTCCCAACAATGGACGATCTTTATATCGCGAGATCTGATGTCCT
TATGCTTGTTTACGAAATCGGGAATCAAAAATCAATTGATTCGATGAAAT
GGTATTACGATTCAGCTCGAAAGACATTAAACGATAAAAAAGTGGCTTTT
ATTGTTGTGGGGACAAAATATGACAAGCATGGGTCAGACATTCATCAAAA
TATAGAGACTGGGTTAGAATTTTTCACAGAGCTACCCGAACAACCAGCAC
AATTTTCAACATCAGCAAAAAATGGGCATAACGTTAAAGAACTTTTCGAA
CATGGTGTAAAAGAGATTCTTAAGAATAATAATGTGAGCGATAAACGTGC
AAAATTCGAACGTCAAATAACAATTGAAGCGAtggaagatgaaaaagaaa
agaaaccttGTTGTACCATTCTCTGATTggttagaaatttaaaaatgatc
TTCTCTTATTGATTAGAAAATCTATGAACTAAATTTTGATTCGTTAGAAT
ATGAAAATACTGTTCTCTGATTGGTTTGTTGAAAGTTGAGAATCGTATTC
TTTTGACAAAGAAAGGAATTAAATGACACGATGTACAGTCGTACAGTTTG
ACAATACTctggatagaccttttcataaattatgtcgTGAGCAaagctta
cctcgttttcaaaatatttatattttaaatgatTCTCAGAGGACTTGATA
AAGTAGTTTACTTTATTTATGAAAGTAAAACTAGAAGGCTCAAGGGATTG
AAccaccttggtaatggtttcaaaacgaggtagTGTTTGCACTCGAAACA
ATCGCATCGCGCCGAATGGGGTTTTctaattttgacgttcgaatcataaa
cgtcaaaaagacgggggtaaaacgTTNaaatttcccccccccccccccgg
acattgtgacttttgaccccctggatattcaaaattaccctcaaacagag
caaaattacccccgaacagagcaaatttaccccccagacaaggtaaattt
tgtagatatttcactaccccccggacactatatcctccacccctcaTGTA
CTGACATTTTCCGGAAGAGCCCAATATCATAATGTCCCAATAATCCTCAG
GTAAGTTAAAGGCAAgttccaaatatattttgtgtGACGCGCACTGCTTC
CCAtattgttccttaactttcgtatatagctcaaaagaagcgtattaatg
aGAGGATTTCGGAAAATGCTgggccaaaattttaaattaagccaatctca
agatatcggccaaaaactgattttgacgttaggAAATACGTTGAAAAATC
ACGTTaaaaagacaagttaaatgacgtcgttttttaaaacagcgataact
tcgattCCATTACTACAATTAACGCCAACTTTTGACTGGAGACGttgatt
gttgattttgaaataatgcatgaaaaaaattttttgatgacgtcatcatt
atttgacgtattttggtttttaccgacagtaaatgacgtcatctaaaaat
tttgaaaatttctcaacaaatatttcagaatcgttaatctacgtctccag
tcaaaatttggtgttgattgcattaatagagttgaagttatcgctgtttt
caataatgacgtcatttgaattttacttatgacgtgttttttcgatgtaa
tTCATAACggcaaaatcagtttttggtcgatatcttgagattggcttaat
ttaaatttttggcccagcacttttcgaaatcctctcattaatacgcttct
tttgagctatatacgaaagttaaggaacaaCATGGGAAGcagtgcgcgtc
acgcaaaatatgtttgagacttcccttaactcacctgagtgAAACCTTGA
CGAAAATTATGAAACCATCAAATGTTCTTCATGAGTATGTTAAtcaattt
catagttttttaCAAACTCCTAGGATATTAGtaggggccaagcctggggt
ttctgctcagaatttcatgctctatcaaATGGTATCaaccattttagttt
atttagaCTTTTGAATCtcagctatttctctaccccttattttcccttgc
agttttgcctatggcgtcactattttggtcacaaaaagttttattgGAAT
GTAAATAGATTTTCGTTAGTCAAAGTTAGTAAGTTATTACTTAGATTTAC
ACAGTAGAAAAtctcaaatgttttgtttttgaataagagtgaCATGGTTT
GCTTACTCAGTAATTCTAATTTACGAgtattttgatattgaattgacacg
g Run BLAST on NCBI protein sequence of TCONS_00065930-protein >TCONS_00065930-protein ID=TCONS_00065930-protein|Name=TCONS_00065930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MDSRRKTALKSLKRKDTVGMLLLGDVDIGKSALIRRWVNNDFPENYQATV
EDFFMKTIICMNQRVNVTIIDIAGSRQFPTMDDLYIARSDVLMLVYEIGN
QKSIDSMKWYYDSARKTLNDKKVAFIVVGTKYDKHGSDIHQNIETGLEFF
TELPEQPAQFSTSAKNGHNVKELFEHGVKEILKNNNVSDKRAKFERQITI
EAMEDEKEKKPCCTIL Run BLAST on NCBI transcript from alignment at scaffold_448:795825..801244+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065930 ID=TCONS_00065930|Name=TCONS_00065930|organism=Clytia hemisphaerica|type=transcript|length=5420bp|location=Sequence derived from alignment at scaffold_448:795825..801244+ (Clytia hemisphaerica)
ATTAAACCTTgataaaattaaaatcatttgaTCACGTTGTATGTAAGTGT
GTATTGCAATATCTTGGATAAGATTCAGCTTTTATCTCTACATTTTTGAT
TACACACTTGGAACTGAAACTTGTCGCCTAAGCTAAGGATAAAGGTTATC
GCCGgataaaattggctttaattGTAAATTTGGCTGAAGGTGCAACTAAC
TTTGTTTAACTTGTTACGACGTTCGATTCAGGAGCTTGGAAAAgcaattt
tcaaataatctttgAATCTAAAAACTTGGAGAAATAATTCACTGGCTCAG
ACAAATAGCTATTCTATCAGATACCATGGATAGTCGTCGGAAAACAGCTT
TAAAATCGTTAAAACGAAAAGATACGGTCGGTATGTTACTACTCGGTGAT
GTCGATATCGGAAAGTCGGCACTTATTCGTCGGTGGGTGAATAACGATTT
TCCCGAGAATTATCAAGCGACTGTGGAAGATTTCTTTATGAAAACGATTA
TTTGCATGAATCAACGAGTCAATGTTACAATTATTGATATCGCCGGATCC
CGACAATTCCCAACAATGGACGATCTTTATATCGCGAGATCTGATGTCCT
TATGCTTGTTTACGAAATCGGGAATCAAAAATCAATTGATTCGATGAAAT
GGTATTACGATTCAGCTCGAAAGACATTAAACGATAAAAAAGTGGCTTTT
ATTGTTGTGGGGACAAAATATGACAAGCATGGGTCAGACATTCATCAAAA
TATAGAGACTGGGTTAGAATTTTTCACAGAGCTACCCGAACAACCAGCAC
AATTTTCAACATCAGCAAAAAATGGGTATAACGTTAAAGAACTTTTCGAA
CATGGTGTAAAAGAGATTCTTAAGAATAATAATGTGAGCGATAAACGTGC
AAAATTCGAACGTCAAATAACAATTGAAGCGAtggaagatgaaaaagaaa
agaaaccttGTTGTACCATTCTCTGATTggttagaaatttaaaaatgatc
TTCTCTGATTGGTTAGAAAATCTATgaactaaattttgattggttagaaT
ATGAAAATACTGCTCTCTGATTGGTTTGTTGAAAGTTGAGAATCATATTC
TATTGACAAAGAAAGGAATTAAATGACACGATGTACAGTCGTACAGTTCG
ACTATACTCTGGATAGACCTTTTAATAAATTATGTCGCGAGCAaagctta
cctcgttttcaaaatatttctattttaaatGATTCTCAGAGGATTCCATA
AAGTAGTTTACTTTATTTACAAAAGTAAAACTAGAAGGCTCAAGGGCTTA
AAccaccttggtaatggtttcaaaacgaggtagTCTTTGCTCTTAATAAT
TTATGAGAAGGTCTATCGATAGAAAATTTGTTTATACTGTTGATATTGAA
CTTAAATGGAAGATCTTTTTAAGATGGTCTAAATTTATCGTGGCAAGTTT
TTCAGACGCTGCAGAGCATTTAAATTGATTCTTACACCCTCGTCTCACCA
NAAAGCGTCATAGCTTTCAGTATAATGAGTGTCCTTCGTTTAATAACAGA
GACTTAAGTTGTGTAAGACAGTGCAAAACTGGCATTTATGATTTTCTGGA
AAAAATAGCTTTAGAGAACTCAGCTTGTTTTAAGTGATCTCAGTATGGGT
GCAATCAGTGAATCGTATTTCTTTCTCAGTACGATGTGGAGGCTATCAAA
ATATCATTTGAAGCAGGTTAGTAATTGATACAGTCtatcaaattgttttt
attaaaaagtttcCCATCGACATATTTTCTCATGTATGCTATATACTGAA
ATAAGTATTACTTTTGACCTCTGGTATTTTCCGTTTATTGGTTTGGTTGA
TTTCTCGTGAATTTACTGATTGAGACTTACCATATTTATTATGATTTTGC
TTGACTATCGTTTCAGTAAAACGGTTTGAGAGCCCGTGGAAACATCAAAC
CTCTGTACCATTTGAGGATTTTTAAGCAATTGTGGATAACTaaaggccgg
tttccacttTTGCGCGAAATGAGCGACAgattgaagaaaagattacgtca
tgaaataTTGTGCGAACAAAAcgaaagttgaaggaagttctacggGAGTC
GTGATACAGGAGTGTCACAACTGATtttgaaatcgatgaaaattgaaaat
ttgataattcagagtatttttttaaattcactcTCTATATTCTAGTCTCA
CTCTCAGAGTTTGGAAAGTGGCATCatgataaaaacactttttcaaGTGA
TCTCGAGAATGATTATAAAGTAGTTTGTGCGTGTGAATTTATCTCATTTA
CTAAACTTGCATAATCGTTCCTGACTTTTATTAGACTTTCTTTTACAATG
AAATTAAGGAGTATTTACTTGAATTTGGAGGTCTTACAGATGATGTCTCA
GGGGTTATTTCATTTATAGAGAGAATTTTAAAGTAGCCCTGGAAGAAGTT
GTTCTTGCTCTTCAAAAGAAGTGCTTTAGATCGCTCTATAGGAGATTTTA
ATAGAAATGGGAGAACtcataaatgaaaatattatgactttaattcgaaa
tacaatttttcttGTCTGTCTGTCATACTTTTGAAAGTAATCTTtaattc
attttattcatttgTAGATATTAAACCTTgataaaattaaaatcatttga
TCACGTTGTATGTAAGTGTGTACTGCAATATCTTGGATAAGATTCAGCTT
TTATCTTTACATATTTGATTACACACTTGGAATTGAAACTTGTCGCCTAA
GCTAAGGATAAAAGTAAACGCCGgataaaattggctttaattGTAAATTT
GGCTGAAGGTGCAACTAACTTTGTTTCACTTGTTACGACGTTCGATTTAG
GAGCTTGCAAAAGCAATATTCAAATAATCTTTGAATCTAAAAACCTGGAG
AAATAATTCACTGGCTCAGACAAATAGCTATTCTATCAGATACCATGGAT
AGTCGTCGGAAAACAGCTTTAAAATCGTTAAAACGAAAAGATACGGTCGG
TATGTTACTACTCGGTGATGTCGATATCGGAAAGTCGGCACTTATTCGTC
GGTGGGTGAATAACGATTTTCCCGAGAATTATCAAGCGACTGTGGAAGAT
TTCTTTATGAAAACGATTATTTGCATGAATCAACGAGTCAATGTTACAAT
TATTGATATCGCCGGATCCCGACAATTCCCAACAATGGACGATCTTTATA
TCGCGAGATCTGATGTCCTTATGCTTGTTTACGAAATCGGGAATCAAAAA
TCAATTGATTCGATGAAATGGTATTACGATTCAGCTCGAAAGACATTAAA
CGATAAAAAAGTGGCTTTTATTGTTGTGGGGACAAAATATGACAAGCATG
GGTCAGACATTCATCAAAATATAGAGACTGGGTTAGAATTTTTCACAGAG
CTACCCGAACAACCAGCACAATTTTCAACATCAGCAAAAAATGGGCATAA
CGTTAAAGAACTTTTCGAACATGGTGTAAAAGAGATTCTTAAGAATAATA
ATGTGAGCGATAAACGTGCAAAATTCGAACGTCAAATAACAATTGAAGCG
AtggaagatgaaaaagaaaagaaaccttGTTGTACCATTCTCTGATTggt
tagaaatttaaaaatgatcTTCTCTTATTGATTAGAAAATCTATGAACTA
AATTTTGATTCGTTAGAATATGAAAATACTGTTCTCTGATTGGTTTGTTG
AAAGTTGAGAATCGTATTCTTTTGACAAAGAAAGGAATTAAATGACACGA
TGTACAGTCGTACAGTTTGACAATACTctggatagaccttttcataaatt
atgtcgTGAGCAaagcttacctcgttttcaaaatatttatattttaaatg
atTCTCAGAGGACTTGATAAAGTAGTTTACTTTATTTATGAAAGTAAAAC
TAGAAGGCTCAAGGGATTGAAccaccttggtaatggtttcaaaacgaggt
agTGTTTGCACTCGAAACAATCGCATCGCGCCGAATGGGGTTTTctaatt
ttgacgttcgaatcataaacgtcaaaaagacgggggtaaaacgTTNaaat
ttcccccccccccccccggacattgtgacttttgaccccctggatattca
aaattaccctcaaacagagcaaaattacccccgaacagagcaaatttacc
ccccagacaaggtaaattttgtagatatttcactaccccccggacactat
atcctccacccctcaTGTACTGACATTTTCCGGAAGAGCCCAATATCATA
ATGTCCCAATAATCCTCAGGTAAGTTAAAGGCAAgttccaaatatatttt
gtgtGACGCGCACTGCTTCCCAtattgttccttaactttcgtatatagct
caaaagaagcgtattaatgaGAGGATTTCGGAAAATGCTgggccaaaatt
ttaaattaagccaatctcaagatatcggccaaaaactgattttgacgtta
ggAAATACGTTGAAAAATCACGTTaaaaagacaagttaaatgacgtcgtt
ttttaaaacagcgataacttcgattCCATTACTACAATTAACGCCAACTT
TTGACTGGAGACGttgattgttgattttgaaataatgcatgaaaaaaatt
ttttgatgacgtcatcattatttgacgtattttggtttttaccgacagta
aatgacgtcatctaaaaattttgaaaatttctcaacaaatatttcagaat
cgttaatctacgtctccagtcaaaatttggtgttgattgcattaatagag
ttgaagttatcgctgttttcaataatgacgtcatttgaattttacttatg
acgtgttttttcgatgtaatTCATAACggcaaaatcagtttttggtcgat
atcttgagattggcttaatttaaatttttggcccagcacttttcgaaatc
ctctcattaatacgcttcttttgagctatatacgaaagttaaggaacaaC
ATGGGAAGcagtgcgcgtcacgcaaaatatgtttgagacttcccttaact
cacctgagtgAAACCTTGACGAAAATTATGAAACCATCAAATGTTCTTCA
TGAGTATGTTAAtcaatttcatagttttttaCAAACTCCTAGGATATTAG
taggggccaagcctggggtttctgctcagaatttcatgctctatcaaATG
GTATCaaccattttagtttatttagaCTTTTGAATCtcagctatttctct
accccttattttcccttgcagttttgcctatggcgtcactattttggtca
caaaaagttttattgGAATGTAAATAGATTTTCGTTAGTCAAAGTTAGTA
AGTTATTACTTAGATTTACACAGTAGAAAAtctcaaatgttttgtttttg
aataagagtgaCATGGTTTGCTTACTCAGTAATTCTAATTTACGAgtatt
ttgatattgaattgacacgg Coding sequence (CDS) from alignment at scaffold_448:795825..801244+ >TCONS_00065930 ID=TCONS_00065930|Name=TCONS_00065930|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_448:795825..801244+ (Clytia hemisphaerica)
ATGGATAGTCGTCGGAAAACAGCTTTAAAATCGTTAAAACGAAAAGATAC
GGTCGGTATGTTACTACTCGGTGATGTCGATATCGGAAAGTCGGCACTTA
TTCGTCGGTGGGTGAATAACGATTTTCCCGAGAATTATCAAGCGACTGTG
GAAGATTTCTTTATGAAAACGATTATTTGCATGAATCAACGAGTCAATGT
TACAATTATTGATATCGCCGGATCCCGACAATTCCCAACAATGGACGATC
TTTATATCGCGAGATCTGATGTCCTTATGCTTGTTTACGAAATCGGGAAT
CAAAAATCAATTGATTCGATGAAATGGTATTACGATTCAGCTCGAAAGAC
ATTAAACGATAAAAAAGTGGCTTTTATTGTTGTGGGGACAAAATATGACA
AGCATGGGTCAGACATTCATCAAAATATAGAGACTGGGTTAGAATTTTTC
ACAGAGCTACCCGAACAACCAGCACAATTTTCAACATCAGCAAAAAATGG
GCATAACGTTAAAGAACTTTTCGAACATGGTGTAAAAGAGATTCTTAAGA
ATAATAATGTGAGCGATAAACGTGCAAAATTCGAACGTCAAATAACAATT
GAAGCGAtggaagatgaaaaagaaaagaaaccttGTTGTACCATTCTCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065930-exon-scaffold_448-1491911889:795825..795915 | TCONS_00065930-exon-scaffold_448-1491911889:795825..795915 | Clytia hemisphaerica | exon |
| TCONS_00065930-exon-scaffold_448-1510915933:795825..795915 | TCONS_00065930-exon-scaffold_448-1510915933:795825..795915 | Clytia hemisphaerica | exon |
| TCONS_00065930-exon-scaffold_448-1575043694:795825..795915 | TCONS_00065930-exon-scaffold_448-1575043694:795825..795915 | Clytia hemisphaerica | exon |
| TCONS_00065930-exon-scaffold_448-1491911889:798535..801244 | TCONS_00065930-exon-scaffold_448-1491911889:798535..801244 | Clytia hemisphaerica | exon |
| TCONS_00065930-exon-scaffold_448-1510915933:798535..801244 | TCONS_00065930-exon-scaffold_448-1510915933:798535..801244 | Clytia hemisphaerica | exon |
| TCONS_00065930-exon-scaffold_448-1575043694:798535..801244 | TCONS_00065930-exon-scaffold_448-1575043694:798535..801244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:795825..801244 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00065930 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.823e-19 Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 2
Query: 389 LLGDVDIGKSALIRRWVNNDFPENYQATVEDFFMKTIICMNQRVNVTIIDIAGSRQFPTMDDLYIARSDVLMLVYEIGNQKSIDSMKWYYDSARKTLND-KKVAFIVVGTKYDKHGSDIHQNIETGLEFFTELPEQPAQFSTSAKNGHNVKELFE 850
+ G +GKS+L+ R+V F E+Y TVED + + I C + I D GS QFP M L I++ +LVY I +++S++ +K Y+ + D + + ++VG K D+ S Q+ E T + A TSAK HNVKELF+
Sbjct: 12 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART---WKCAFMETSAKLNHNVKELFQ 163
The following BLAST results are available for this feature:
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