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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065919 ID=TCONS_00065919|Name=TCONS_00065919|organism=Clytia hemisphaerica|type=transcript|length=3337bpRun BLAST on NCBI protein sequence of TCONS_00065919-protein >TCONS_00065919-protein ID=TCONS_00065919-protein|Name=TCONS_00065919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp XAKRELQSQLDELRDDYDNEKSAKEKAERSKRDLENDLEDLRSELEVSADRun BLAST on NCBI transcript from alignment at scaffold_448:562100..572448+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065919 ID=TCONS_00065919|Name=TCONS_00065919|organism=Clytia hemisphaerica|type=transcript|length=10349bp|location=Sequence derived from alignment at scaffold_448:562100..572448+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:562100..572448+ >TCONS_00065919 ID=TCONS_00065919|Name=TCONS_00065919|organism=Clytia hemisphaerica|type=CDS|length=6225bp|location=Sequence derived from alignment at scaffold_448:562100..572448+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065919 vs. Swiss-Prot (Human)
Match: MYH10 (Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3) HSP 1 Score: 383.645 bits (984), Expect = 1.326e-147 Identity = 270/517 (52.22%), Postives = 385/517 (74.47%), Query Frame = 1
Query: 973 YQRSEKVKKKLQGELDDANVQTERERQNAAQISSKQRKFDTQLAEERAQLEALRVDRDNVEKQARANETKVLSFQNLVAELEDKLADSERLRKNQASELQDLVDTKDDVGKSVHELEKTKRLLEQQLNEQKTQVEELEDELQATEDAKLRLEVNLQAAKAQFERDLAAKEDSIEEGRRSLVKQXXXXXXXXXXXXKARQSISAAKRKLEGDNKDLEGQLEQANRIKEEGNXXXXXXXXXXXDVQRDLEDSRQSRDDLANQVKENEKKLKTLESDFLQMQEDLSAAERARRTIEQERDXXXXXXXXXTSAKQAVAEERKRWXXXXXXXXXXXXXXXXXXXXMQDKVRRSNLQLEQMQAELNEERSAAQSLDNTRMQLERQNKDLQGKLADMESSLRSRNKNVVATMESKINNLEIQLDQEAKDRQQLSKNLRKSDKKIKDLNIQIEEERAHTDSYKQQVDKVNARLKNMKRQLDETEEEVTRLNSAKRKLQRDLDESNETLESSQREVNQLRQRMKGG 2523
Y + EK K +LQ ELDD V + +RQ A+ + KQ+KFD LAEE++ +RD E +AR ETK LS + E + + ER K ++++DL+ +KDDVGK+VHELEK+KR LEQQ+ E +TQ+EELEDELQATEDAKLRLEVN+QA KAQFERDL +++ EE +R L+KQ+RE+E ELEDERK R A+K+K+E D KDLE Q+E AN+ ++E KQL+K Q Q+KD QR+LE++R SRD++ Q KE+EKKLK+LE++ LQ+QE+L+++ERARR EQERDEL +E+ N+ S K A+ +E++R EA+IA LEE+LEEE++ EL+ D+ R++ LQ++ + AEL ERSAAQ DN R QLERQNK+L+ KL ++E +++S+ K ++ +E+KI LE QL+QEAK+R +K +R+++KK+K++ +Q+E+ER H D YK+Q++K NAR+K +KRQL+E EEE TR N+++RKLQR+LD++ E E REV+ L+ R++ G
Sbjct: 1415 YDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQKKFDQLLAEEKSISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKSLEAEILQLQEELASSERARRHAEQERDELADEITNSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNDRFRKTTLQVDTLNAELAAERSAAQKSDNARQQLERQNKELKAKLQELEGAVKSKFKATISALEAKIGQLEEQLEQEAKERAAANKLVRRTEKKLKEIFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRLRRG 1931 HSP 2 Score: 160.614 bits (405), Expect = 1.326e-147 Identity = 117/283 (41.34%), Postives = 187/283 (66.08%), Query Frame = 2
Query: 11 RELQSQLDELRDDYDNXXXXXXXXXXXXXDLENDLEDLRSELEVSADASVVQKDMQRKRDEDLMDLKRQVAEEAKEHEGQMASLRTKHNNLVEELNNQLDQFKRTKTSLEKNKNSLESENAELASDLQRVSSMKADAEKKNKSLDNQVNELTMIRAEQEESITKLDSTCGKLQKECDSLNGALEDIESKAANLERAKLSAEAQLEDVQDQLSNETRVKLQLQTKLREANDEANRMXXXXXXXXXXRKAVQKALSTVQIQLEAAKKELEISVGGIEEAEAAKQK 859
RELQ+Q+ EL++D+++EK+++ KAE+ KRDL +LE L++ELE + D + Q++++ KR++++ +LK+ + EE K HE Q+ +R +H +EEL+ QL+Q KR K +LEKNK LE++N ELA +++ + +KA++E K K LD QV EL +E + +L KLQ E D+++ LE+ E K + S E+QL+D Q+ L ETR KL L +++R+ +E N +QEQ E+EEE RK ++K + +Q QL KK+++ +G IE E AK+K
Sbjct: 1114 RELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKALEEETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKASKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKK 1396 The following BLAST results are available for this feature:
BLAST of TCONS_00065919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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