XLOC_041301 (gene) - C. hemisphaerica

Overview
NameXLOC_041301
Unique NameXLOC_041301
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_448:562100..572448+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041301 ID=XLOC_041301|Name=XLOC_041301|organism=Clytia hemisphaerica|type=gene|length=10349bp|location=Sequence derived from alignment at scaffold_448:562100..572448+ (Clytia hemisphaerica)
TNGAGCGAAACGTGAATTGCAGAGCCAGTTAGACGAGCTGAGAGACGACT
ATGATAATGAGAAATCTGCCAAAGAGAAAGCTGAACGATCCAAACGCGAT
CTCGAAAACGTAAGTCTCACTTTTCCCATTGTAGGATGTTATGATACTTC
TACACTTTGTCAAAGCCTAAGTTGCTTTTGAACGAAATCTTGACCAGTAT
TGAGCCACAGCAAGTGGGCTTTTGAGCAGGATGTTATGGGCTTTTGAAAC
ATCTAATAATAGCTAAATATAAATTTGTCAAAAAGCTTATCGATTTTATA
GCAGAAAAAAGCTTACAAGACacccttcaaaatatttttctcgtctAACA
GAGGCTTTGAGGTCAAATTTTTAACATCTATAGTTCTAACCTTTACAAGA
TCGAGCAATTCAATAACATATTTCATGTAAAATTAAGTTTAGAGGATTTC
ATCTTGATGATGATGGTGACTCGAATAATAAGGGCTGAAGAATTAGCGAT
CCCCACTGGAAAGTCTTTCCCAAATAATGGACACGATACGAGGTTGAGTT
AACTGTAGATGAAATAATCTCCTTATTACAGGATTTAGAAGATTTACGTA
GCGAGCTTGAAGTTTCCGCCGACGCTTCAGTCGTCCAGAAGGACATGCAA
CGAAAACGTGACGAAGACTTGATGGATCTCAAGAGACAGGTCGCAGAGGA
AGCCAAGGAACACGAAGGACAAATGGCTTCGTTGAGAACCAAACATAATA
ATTTGGTTGAAGAACTCAACAACCAATTGGATCAATTCAAACGAACCAAA
ACTTCCTTGGGTATGCTCGTCTAAGTTTAATTCAtgattgcaatgtcttc
cattccacccaatagctaaTTGGttcaaagtgacgtattgactgatttta
cgtcacttacaaccaatgagcgattggttccgtgatgtaatgtcagaaga
cattgcagtggtgcatatcatgaatNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGGGGttatttttgttcgaatttcAACATAAAGTGTGCTCTACTCAGC
AAAATATACTGCCGATATAAATAAACAGGAATCTTTATAAACTCACGCCA
ACTGGGTACCCCACTCTAATCGGTATGTGAAAATGTTGCTTGTCTATTTC
TCGCACTTATTTGAGCACTTTTGATCAAATGATTGTTTTATTATGAAGCA
ATCTTGAAGACATAATCAATCAAAGAAATCGTTTTGTTTTCCCCCCTTTC
TAGAGAAGAACAAGAACTCACTTGAGAGTGAAAATGCTGAGTTAGCATCT
GATTTGCAACGAGTGAGCTCCATGAAAGCTGACGCCGAGAAGAAGAACAA
ATCTTTGGATAATCAAGTCAACGAGCTCACCATGATTCGCGCAGGTACCA
TTTATATCTTACATTGTAACCATTCCAAGCCCTCTTTATTTATTCAACTA
ATTAGTCTACCAGTGTTCTTGAATATACTTGACGGAGCTTCAGGAAACCG
AGCGATAACCTTTAGTTTGACGCTTATCTACGCTAAAATGACTTAAATTT
GTCCAAAGATTATAAATTGGTCGTGTTATTTTAGTTCATTTTAAGATTTA
CAGAAAAAGTAGGCAGAATAGTTAGTCCTTTAtgatgttttgaatttgtt
gaaGGATAATTCTACGGCAATTTAGTGGTCATAATGGTCATTCTCGATCG
GGATAACTTTGTGTGTTGAACAAGCAAACTTCTGGACTTAATTTCTCATC
ATTCCTTTTTACTTTATCATCCAGAGCAAGAAGAATCAATCACCAAATTG
GATTCCACTTGCGGTAAACTGCAAAAAGAATGCGATTCTCTCAATGGAGC
TTTGGAAGACATCGAGTCGAAAGCTGCCAATTTGGAACGTGCCAAATTGT
CTGCTGAAGCTCAATTGGAGGATGTACAAGACCAATTATCGAATGAGACA
CGAGTGAAACTTCAATTACAAACGAAATTGAGGGAAGCAAATGATGAAGC
GAACCGTATGCAAGAACAATTGGAAGATGAGGAAGAGGAACGAAAAGCTG
TTCAAAAAGCTCTGTCTACAGTGCAAATTCAAGTAAGTCAAATTTCCCAA
TTCACTTTCCTAAATTGCTTTCTTGGATGATAAAAGAGGTTCTCTCATTA
GTAAAGCTCAAAATGTTGTTTTAGAAGTGTCTAAATTATTATACGGGTAA
AGAGGTCAAGCCGTTTCGAAAAGGTCCGCtctctctagatcaaaagtcaT
AGGTtcgcaaaaaataagaaagctTCCAAGTATTTTAGGTGAAATTTCCA
GGTGCACACTGCTAACAAATACTTATTTCGCATACTAATTTCAGCTCGAA
GCCGCCAAGAAAGAATTGGAGATTTCCGTAGGTGGAATCGAAGAAGCCGA
AGCTgccaaacaaaaacagaaacgCGAGAACGACGAATTACGCGCAGACN
AGAAGCCGAAGCTgccaaacaaaaacagaaacgCGAGAACGACGAATTAC
GTGCAGATTTGGAGAAAGTGCAGGCCGACTACCAACGATCTGAGAAAGTT
AAGAAGAAATTGCAGGGAGAATTGGACGACGCTAACGTTCAAACAGAACG
CGAGCGCCAAAATGCCGCCCAAATCTCCTCCAAACAACGCAAATTCGACA
CTCAATTGGCTGAAGAACGAGCCCAATTGGAAGCCTTACGCGTCGACCGT
GACAACGTTGAGAAACAAGCGCGGGCCAACGAAACTAAAGtgttatcttt
tcaaaacttgGTCGCCGAATTGGAAGACAAATTGGCTGATTCCGAACGTT
TGAGAAAAAACCAAGCTTCGGAGTTGCAAGATTTGGTCGACACAAAAGAC
GATGTTGGCAAGAGCGTTCACGAACTTGAGAAAACCAAACGTTTGTTGGA
ACAACAACTCAACGAACAGAAAACACAAGTCGAAGAACTGGAGGATGAAC
TTCAAGCCACTGAGGATGCTAAATTGAGATTGGAGGTGAGCTGGGAATTT
TCTCTATTtgtgatacacgctttttttatataagaatagcttctataaga
atatcagggtgaaaatttgccaaatcgtaagaataccctaagaataccct
ccagGGTGAGTTTTAATCAGTCGATAAGAATAAAACTGACATGacaatgt
gtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtcatgaaaatttt
gatttttggggcctggggacgagtttttctccaaaacgaggctaaaactt
tggggcagcctggagacttcaaaaatggtcagctttggctgaaatttggc
acacttattcctttggtgaatatctggtggtctacaattgggcctttgaa
aaatttgaagccactgaagttgagcccagtgcgttgcgcacttTCGACTA
TTTTAATCAGTCGATAAGAATAAAACTgacatttttcagaaaatgggaaa
acaaaagtgatactaattatttaacaaaaaagagtgttttttcttttgtg
tatGTATACGTAAATTAGAATCACTCACATAAGCTGTCTAGAAAGgaaat
ttttctctgaaataataagaatacgttaagactATTTCACCCTCGATTTT
GACAATTTCTTTAGAATACTTGACTTATAAGAAAGCGTGTATTCGTTTTG
TAATGTTTTGCACGGAAGCACTCAAAAAAGGCCGGGTGTTAGCCCGGGCT
ACCATGtttgtcataaattttgaattttgaatattttaagcCCGGGCTAC
CATAAACAAGCAGGAGTTCTTGCATTACTGATTTCTTACACAATCATTCC
AAATTATTTATGAATTTTAAATTGTTTCACTTCAGGTCAATTTACAAGCC
GCTAAAGCACAATTCGAACGTGACTTGGCTGCAAAGGAAGACTCAATCGA
AGAAGGCCGAAGATCCCTTGTCAAACAAGTAAGTTAAAGTTCCTTTTGTT
TTTCGCCCTCCTCACGAATTGGGTTTAACTTTAATTTAACCGTTTCATTA
GTCTTTTGTCAATATAATTTAGCTCTCTACTTTTTCCCTGACAGCCTTAA
GTCTTTGTATTTTGATGTCAAGATGATATGATATACACAAAGTTTTTCAA
GGTTCTCATAGTTTTCTGTTTGATGAACTGAAACCTTTGTGCTAGTATCA
AGCACGGTCTATCGGCATGGCTCAATTTCtctgttcttcttcttcttcag
ttACGCGAGATGGAAGAAGAATTAGAGGACGAGCGAAAAGCACGCCAATC
CATTTCGGCCGCCAAACGAAAGCTGGAGGGAGACAACAAAGACCTCGAAG
GACAATTGGAACAAGCCAACCGAATCAAGGAAGAAGGTTTGTAGAGCTCA
TTTTAAGAGGGTGTTGGGCACTTGTTACTAGTCTCCCTGTCATTCCTTAA
TTATTTTATGATTTAACATTTTTAAgggcttttaaatttttttcagttta
tTAGGAATTTTATGGGTGCTAGTATTCTAAAACTTAAATTGACTTTATGA
TttctaacaaaaaaaaattaactccaAACAACGAATTTCTTATAATAACC
TATCTTCATAAGTAAAGGTATTACAACTTCAACTCACAATTATTCACACC
AGGAAACAAACAACTCAAGAAATACCAACAACAGCTCAAAGACGTACAAC
GCGACTTGGAAGACTCACGACAATCGCGCGACGATCTCGCCAACCAAGTC
AAAGAGAACGAAAAGAAGCTCAAGACATTGGAATCCGACTTCCTTCAAAT
GCAAGAAGACCTCAGTGCGGCCGAACGTGCCCGCCGTACCATCGAGCAAG
AACGCGACGAGCTCCTTGAAGAACTTAACAACAACACATCAGCCAAACAA
GCGGTCGCCGAAGAACGCAAAAGATGGGAAGCTCAAATCGCCGCTCTTGA
AGAAGATTTGGAAGAAGAACGAACACAGACTGAACTCATGCAAGATAAGG
TAAGGTTCTCTATACAAGATNGACTTGGCTGCAAAGGAAGACTCAATCGA
AGAAGGCCGAAGATCCCTTGTCAAACAAGTAAGTTAAAGTTCCTTTTGTT
TTTCGCCCTCCTCACGAATTGGGTTTAACTTTAATTTAACCGTTTCATTA
GTCTTTTGTCAATATAATTTAGCTCTCTACTTTTTCCCTGACAGCCTTAA
GTCTTTGTATTTTGATGTCAAGATGATATGATATACACAAAGTTTTTCAA
GGTTCTCATAGTTTTCTGTTTGATGAACTGAAACCTTTGTGCTAGTATCA
AGCACGGTCTATCGGCATGGCTCAATTTCTCTGTTCTTCTTCTTCAGTTA
CGCGAGATGGAAGAAGAATTAGAGGACGAGCGAAAAGCACGCCAATCCAT
TTCGGCCGCCAAACGAAAGCTGGAGGGAGACAACAAAGACCTCGAAGGAC
AATTGGAACAAGCCAACCGAATCAAGGAAGAAGGTTTGTAGAGCTCATTT
TAAGAGGGTGTTGGGCACTTGTTACTAGTCTCCCTGTCATTCCTTAATTA
TTTTATGATTTAACATTTTTAAgggcttttaaattttttttcagtttatt
AGGAATTTTATGGGTGCTAGTATCCTAAAACTTAAATTGACTTTATGAtt
tctaacaaaaaaaaaattaactccaAACAACGAATTTCTTATAATAACCT
ATCTTCATAAGTAAAGGTATTACAACTTCAACTCACAATTATTCACACCA
GGAAACAAACAACTCAAGAAATACCAACAACAGCTCAAAGACGTACAACG
CGACTTGGAAGACTCACGACAATCGCGCGACGATCTCGCCAACCAAGTCA
AAGAGAACGAAAAGAAGCTCAAGACATTGGAATCCGACTTCCTTCAAATG
CAAGAAGACCTCAGTGCGGCCGAACGTGCCCGCCGTACCATCGAGCAAGA
ACGCGACGAGCTCCTTGAAGAACTTAACAACAACACATCAGCCAAACAAG
CGGTCGCCGAAGAACGCAAAAGATGGGAAGCTCAAATCGCCGCTCTTGAA
GAAGATTTGGAAGAAGAACGAACACAGACTGAACTCATGCAAGATAAGGT
AAGGTTCTCTATACAAGACACTGTTAAAGGTTTTGGGAATAGCGAGGCTG
AATAAGGTTAAGTTCTCTATACAAGACACCGTTAATATCGTCTAGGTATT
TGAATAAGATTTTAGTGCCAAATTTAAAAGAACTTTGCTACAGCCAATCA
AGTTAACAATAAAACGAATGAAATCtgatgaaatacaaaatttctACGAA
CTCCTTTGACATTTTCTCCTATGTTCGTAACCttaacattttcattttgt
aaattAATCCATTCTCTTGCTATAGGTCCGTCGCAGCAACTTACAACTCG
AACAAATGCAGGCCGAGTTGAACGAGGAGCGGTCAGCAGCCCAATCACTC
GACAACACTCGAATGCAGCTCGAACGTCAAAACAAAGACTTGCAAGGCAA
ATTAGCTGACATGGAATCTTCACTTCGATCAAGAAACAAGAACGTCGTCG
CCACTATGGAGAGCAAGGTATAAATCTTAGACTACGCTCACACACCACGG
TTCCGTTTTAAGGCCGATCTCCTCGCGCGACATGGCTGAAGGAAAGATTA
CGtcaaagtttcgcgcgaacaaaaacaatttgaaggaagttctacttttt
tcatccgaaACGAAATAAAACCATTCTCttggttaaattcaatttttacg
aCACTtaaaccaatagaatggctttatTTCATTTGGGAGGATCGTCTTGT
TTGACCTTAAAACAACTTTATTTATGTTTTAACTAAACGTGCCGTGAACT
ACCTTCTGGATTCCAtctttttctgcaaaaaaacaTGCAGTCTAGGCTTC
ATACATGCTACACTAAGTAATCGACGTGTTATTTCCTTTCGTATGGACTT
TGGTTTTGTTTAATCTGTACCTTTCATCTCTTTGCTACAGATCAACAACC
TGGAAATCCAACTGGATCAAGAAGCAAAAGACCGACAACAATTGAGCAAG
AACTTGAGAAAATCCGACAAGAAAATCAAAGACTTGAATAttcaaattga
agaagaaagagCTCACACTGACTCCTACAAACAACAGGTATGAACCACTC
AATTTTTGGCTGAGCTTCTATAAACAATCCGCCCTTGTGATTCGTCGATG
AGCAATAGAAAAAATGTCCTTTGTCACAGAcatcaactcacttcaagaaT
CTATCTAAATTACTTCGCAGACAACCACAGCGAACGCGTATCATAAACTT
TACCCCTGAAAACCAAAATAGTATTATAGCTCTTAGCCTCAATACTATAG
TTTTGCTTGATCAgtgatcaaactttttcaatctCCTCAGATTTCCGTAG
AATTTGAAGAATCTTATGTTGGTTGAGTTCCATTTCCGCCATTTGTATTA
TTctttaattttggttatttcctATCCGTCAGGTTGATAAAGTGAACGCC
CGCTTGAAGAACATGAAACGACAATTGGACGAGACTGAAGAAGAAGTCAC
ACGATTGAACAGTGCTAAACGAAAGCTTCAACGTGATTTGGATGAGAGCA
ACGAAACGCTCGAATCTTCGCAACGCGAAGTTAATCAATTGCGACAAAGA
ATGAAGTaagcttttgtttttgttactTATACTTATGCCTCCTTAttcgt
gacgtaatgttttctacttCTAGCTAgagaaaatttgcttaaaacaTTAC
CActaccattttttgagcatttttgcccatttttctaaaaaaccagctgt
tttagagtctgcaaagccttaaaatgttcttaacattttggtcatcgaat
ccttatgttcttgtgcagtttgttcttataaaaaataacatgTATCCTTT
CCTAACTGatttgtttctttctttgtaGGGGAGGAGTAGGCGCTCGTTCA
ACAACTTCTCGACGTCGCGCTAAGGATGACGAAGACGAAGATGATGAAGA
GGCGGCTGAATAAGCACGCCCGTTGTCTGCCCTATATTCACACCCATCAC
CTGCCCATTCACCAAATCAATTTATTGACATCAGAAATTAtgtaaaaagt
attttttcacacTTTGCTTTCTTCCGTAGTAATGTAGGAAACATTTTCGG
ATTTTGCTAATATTTACATGTTATCTCTTTGTAATTTTATTGTatgtgat
tttatttttgtgactgtttttgtttgtttattttattaaattttccaTTA
GTTGTTGCGCTTCCTCACAGAGAGAGAGATCGTGACTACAGAGACGTACT
ATTCTATCTCCTCCAAGGGGGCGTGATTTTTCGAACGTTCCTATTTATGT
TTTATACGTACActgttcatttaaaaaaaaaaaattaattcaaaaaataa
aatccatTGAAAACTAGGTTGGAAATGAATACAACTATTCGTTTAAATTT
TTGGGGAACTCGATTTTTGTATGGGGATGAAAATTGAGGTCTATCTTTTC
CCGACTTTGCATCTATAACAGGAGtagatttttagaatttttttaattta
atatttcttcaagtttttttaatcaattttttttttgttcaaaataatta
ttgCCAATATTATCAATAGAAAGTGCTCTtcgagatttttttattttgaa
gtttattttCGCTTGATATAATACGATCGATATATTAAAGACTTTGTACC
TtcttaaaaatccaaaataaatCGAAAGCATATTCTTCTTAATCGAATG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065919TCONS_00065919Clytia hemisphaericatranscript
TCONS_00065920TCONS_00065920Clytia hemisphaericatranscript
TCONS_00065921TCONS_00065921Clytia hemisphaericatranscript
TCONS_00065922TCONS_00065922Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065919-proteinTCONS_00065919-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:562100..572448 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
154.18	135.92	183.78	195.33	154.47	121.51	425.49	483.45	249.39	331.6	232.75	154.28	352.96	377.56	367.93	444.92	419.01	471.55	368.14	333.12	193.98	210.15	233.78	224.16	243.18	281.88	206.64	224.91	531.51	582.63