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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065913 ID=TCONS_00065913|Name=TCONS_00065913|organism=Clytia hemisphaerica|type=transcript|length=1588bpRun BLAST on NCBI protein sequence of TCONS_00065913-protein >TCONS_00065913-protein ID=TCONS_00065913-protein|Name=TCONS_00065913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp MSEQPNRRMGKGEKKRPLKIVMPPVHQTQPQPVNAPRNLSDRTTLTVNSQRun BLAST on NCBI transcript from alignment at scaffold_448:528603..544571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065913 ID=TCONS_00065913|Name=TCONS_00065913|organism=Clytia hemisphaerica|type=transcript|length=15969bp|location=Sequence derived from alignment at scaffold_448:528603..544571+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:528603..544571+ >TCONS_00065913 ID=TCONS_00065913|Name=TCONS_00065913|organism=Clytia hemisphaerica|type=CDS|length=13689bp|location=Sequence derived from alignment at scaffold_448:528603..544571+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065913 vs. Swiss-Prot (Human)
Match: MP2K6 (Dual specificity mitogen-activated protein kinase kinase 6 OS=Homo sapiens GN=MAP2K6 PE=1 SV=1) HSP 1 Score: 392.119 bits (1006), Expect = 2.595e-132 Identity = 196/333 (58.86%), Postives = 244/333 (73.27%), Query Frame = 1
Query: 277 KGEKKRP-LKIVMPPVHQTQPQPVNAP-RNLSDRTTLTVNSQDYPCSTDDLIEICELGRGAYGVVEKMRHKQTNIEMAVKRIRHTVNTTEQGRLLMDLDVSMRLSNYPYAIQFYGALFKEGDVWICMELMKTSFDKFYKKVAEQEGALIPEKVLGKISFAVVSALEYLHSKMKVIHRDVKPSNILVNDNGEIKLCDFGISGQLVDSLAKTLTAGCKPYMAPERINPTKGQHGYDIRSDVWSLGITMVELACLKFPYSRWTTPFDQLKAVVEEPSPTIPSEHNYSDELHQFISLCLKKNFLERPKYDTLLTDSFILTHEKTPVNEIAGFVQPIL 1269
KG+K+ P LKI P QPQ + P R+L + +++ +Q++ DDL I ELGRGAYGVVEKMRH + MAVKRIR TVN+ EQ RLLMDLD+SMR + P+ + FYGALF+EGDVWICMELM TS DKFYK+V ++ G IPE +LGKI+ ++V ALE+LHSK+ VIHRDVKPSN+L+N G++K+CDFGISG LVDS+AKT+ AGCKPYMAPERINP Q GY ++SD+WSLGITM+ELA L+FPY W TPF QLK VVEEPSP +P++ +S E F S CLKKN ERP Y L+ F HE + ++A FV+ IL
Sbjct: 5 KGKKRNPGLKI--PKEAFEQPQTSSTPPRDLDSKACISIGNQNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPAD-KFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE-SKGTDVASFVKLIL 332 The following BLAST results are available for this feature:
BLAST of TCONS_00065913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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