TCONS_00065910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065910
Unique NameTCONS_00065910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065910 ID=TCONS_00065910|Name=TCONS_00065910|organism=Clytia hemisphaerica|type=transcript|length=1047bp
GGAAATCTGTCAGCGCGATAAGACTTCAAAGAAACTACTGCTGGAAGTAG
GCTAGTAAAATTCCAAAGTTTAGGGAAAgggaacggaacggaacggacGG
AAGACACTACAAACAGCTCTTGACGTCCTCGAATCAcactttgtcaattt
ttagaACGTTCCCCCTCTTTTCAGCATTGAATTCTGAAAGATTCAGATCT
CTATATACAAGGATCAACGTGCAATGAGATGAGAATAAAAATTTCGGACA
TTTTCAAAGATGTCAGAGCAACCTAACAGAAGAATGGGCAAGGGAGAGAA
GAAACGCCCACTAAAAATTGTCATGCCTCCTGTTCACCAAACGCAACCTC
AACCAGTaaatgctccaAGGAATTTATCAGATAGAACCACATTAACTGTG
AACAGCCAGGATTACCCGTGCAGTACTGATGATTTGATAGAAATATGCGA
GCTTGGTCGTGGGGCCTATGGGGTTGTAGAAAAAATGAGACATAAACAAA
CTAACATAGAAATGGCTGTGAAGCGTATTAGGCACACGGTCAACACGACA
GAGCAAGGTCGTCTATTAATGGATTTAGATGTTTCAATGAGACTTAGTAA
TTACCCCTATGCCATCCAGTTTTATGGTGCACTCTTCAAAGAGgGAGATG
TTTGGATATGCATGGAACTCATGAAAACATCATTCgataaattttataaa
aaagttgcAGAGCAAGAAGGGGCTTTGATACCTGAAAAAGTACTGGGAAA
AATATCCTTCGCTGTTGTTTCTGCATTGGAATATTTACATAGTAAAATGA
AAGTAATCCACAGAGATGTCAAACCGTCCAATATATTAGTTAATGATAAC
GGAGAGATCAAATTATGTGACTTTGGAATCAGCGGACAACTGGTTGACTC
TCTGGCAAAAACCCTTACAGCTGGCTGTAAGCCCTATATGGCTCCTGAAC
GTATCAACCCAACGAAGGGACAACATGGTTATGATATACGTTCTGATGTG
TGGAGCTTAGGAATCACCATGGTCGAACTGGCATGTTTGAAATTCCC
Run BLAST on NCBI

transcript from alignment at scaffold_448:528590..541591+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065910 ID=TCONS_00065910|Name=TCONS_00065910|organism=Clytia hemisphaerica|type=transcript|length=13002bp|location=Sequence derived from alignment at scaffold_448:528590..541591+ (Clytia hemisphaerica)
GGAAATCTGTCAGCGCGATAAGACTTCAAAGAAACTACTGCTGGAAGTAG
GCTAGTAAAATTCCAAAGTTTAGGGAAAgggaacggaacggaacggacGG
AAGACACTACAAACAGCTCTTGACGTCCTCGAATCAcactttgtcaattt
ttagaACGTTCCCCCTCTTTTCAGCATTGAATTCTGAAAGATTCAGATCT
CTATATACAAGGATCAACGTGCAATGAGATGAGAATAAAAATTTCGGACA
TTTTCAAAGATGTCAGGTATGTGTTTTTTCAGGGCCATTTTGCGTTGTTC
GTAAATTTCTTTTTGGTTGCCGACACTTTTCCCTTTGCTCACAGTTTTGT
TCTATGAAGCTCACAGTCTTAaaatgaatagaccttttttcaaagaggcc
accctgttgaataattatgtagtccagcagaaaaacaatgataaaaccat
gcataattatcacaatatgcatgatacagtaattatgcatggctctatca
ttgtttttatggctggactacataaccagacgatgtcaatcgaacggaat
cgaacaaaaattccaatcgaatcaatcgaacgcaatcgaatgattgcgat
tcgattgccaaacgcaatcgaatatcaatcgaacgtaaaattctgggtaa
aattcgattgattcgattgatattcgattacgttcgattgatgttcgatt
acgttcgattgatgttcgattacgttcgactgcGTTCGACGGGTGGTCAA
TTAAATTAGATTCCAATTtacctcaattcctttcaaGGTGATATGGAAAT
CGCGAACCGGCCAAACAGCCATCGTACTCGTAGATTTTGCGGGCAACGTG
ACATACAGCCGTCTTTTCTTCGATTCATATCATCTCGTTTAACGCTTCAA
ATGTTGAACAAGAATCAACgttaatcaacagaatcaattagtcgaaccag
tcgaatgcaTAAGCCAATCGAACGtagtcgaatcaatcgaatacattagt
caatcgaacgcaatcgaatcaatcgaacacagtcgaatcaatcgaatcaa
tcgaatccaggcactaatcgaacgcaatcaaatcaatcgaacacagtcga
atcaatcgaatacattagtcaatcgaacgcaatcgaatcaatcgaacaca
gtcgaatcaatcgaatcaatcgaatccaggcactaatcgaacgcaatcaa
atcaatcgagaaaatcgcggtaatattcgattgacattcgattgcgttca
attgattcggcgttcgatttgttcgattgacatcgtctggacataattat
tcaacagggtggcctctttgaaaaatattattcctttctctaaaaaagaa
gggtgtcggaattagacgaggcgAGGGATGTCCAAACGATcccaatcgaa
cggaatcgacgatcaaaccagtcgaaccaaatcaaacgcaatcgaccggg
ttatttttttcttgtattttttgaaattgtctggTACTGTTGGATtctag
aggaggggtgtcgatattagaccaagttGCGGTACGCACCACCACTAAGG
GGGaagggggtcttctcaaaagcgtatgcttgctaACAGggcacaagtgt
tacgcgtaagccaaatcgcgtattatgaacaacctctaaattgctgatta
caggagaaaaaaaatcgaaattcaaaatggcagcCAAGCCCAcactgata
actatcaaaaatctttgtttttcaatcagctaccgtgagattgggtaact
tgcatcagtggaggcaaacatgcataaacctcaaatgaaagacctgtatt
aagttgaagttggtttgatattctacgtttgacgtttgatattcgtttga
tattctcaaatttgcgttttgaagtttttgtgactacttttggaactgga
aactattggaagccaatagactTTATTCTCAAGtgtgtctgtgcaaaatt
tcagcgctctccgtcgcagtgtgctccctctaaaaatttgtaaccgtcaa
acctcatttcggccgaaatgacaagttgggctcctgtgggggagagcggt
tatctttggaattggaaactattggaagccaatagagtttattctcaagg
gtgtctgtgcaaaatttcagcgctcttcgacgcagtgtgctccctctaaa
aatttgtaaccgtcaaacctcatttcggccgaaatgacaagttgggctcc
tttGGGGGAGAGTGGTTATcattggaattggaaactattggaagccaata
gagtttattctcaagggtgtgtgtgcaaaatttcagcgctctccgtcgca
gcgtgctccctctaaaaatttgtaaccgttaaacctcatttcggccaaaa
tgacaagttgggctcctgtgggggagagtggttatctttggaactggaaa
ctattggccatttttagagggagcacgctgcgacgaagagcgctgaaatt
ttgcttccaatagtttccagttccaaagataaccactctcccccacagga
gcccaacttgtcattttggccgaaatgaggtttaacggttaccaattttt
agagggagcacgctgcgacgaaGAGCGCTGATATtttgcacagacaccct
tgagaataaagtctattggcttccaatagtttccagttccaaagataacc
actctcccccacaggagcccaacttgtcattttggccgaaatgaggttta
acggttaccaatttttagagggagcacgctgcgacggagagcgctgaaat
tttgcacagacacccttgagaataaactctattggcttccaatagtttcc
agttccaaagataaccgctctcccccacaggagcccaacttgacatttcg
gccgaaatgaggtttaacggttacaaatttttagagggagcacgctgcgt
cgaagagcgctgaaattttgcacacacacccttgagaataaactctattg
gcttccaatagtttccagttccaaagataaccactctcccccacaggagc
ccaacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgctgcgacgga
gagcgctgaaattttgcacacacacccttgagaataaactctattggctt
ccaatagtttccagttccaaaagtagtcacaaaaacttgaaaacgcaaat
ttgagaatatcaaacgaatatcaaacgaatatcaaacgtcaaacgtagaa
tatcaaaccaacttcaacttaatatgacctgtctggtcatttaAATACAA
CTACACAGCTccactcgcagctctactctaccatttttgttttgattaaa
ttttgtattttaatgactagccaggtctttcatttgagggctatgcatgt
tagcctccactgatgcaagttacccaatctcacggtattacagctcaata
aatcaatgaaataatttgaaataaaaagtattaCAAAcgttgaacctttc
atgaatccaaataaataaaagtatttatctaaagtgaagattgcatttca
aaataaaacgatatCCAAACCAACTTAAAGACAGTGTCtgcctagcctgg
atatccaggctgtaaactatttcacagtctagtctttgatattttatgtt
ctggtttacagcctggtctccctagagcgatttgcattctccatatgaga
atgcagtctGCTTGCTTGTGCTCATTTCGCTGAAGCCGTAAGGACCAATC
TACACGGTGcggagcaattctgaagcaaaaataggatagtcctccacttg
ctagtgaagagagcgctttctgttacatgaaaacatgaaaaagaagaaaa
cagaggcaagttcattttccaagaaaacatggtctgatgtttggtcatga
taatgcatgcaaacttgttcatgggctccggtgtaatctttggatgtttt
aaatggttttagataTTGTAAGGCTGCTTTTATTAAGTTCTGTTTTgatg
ccctgggttggctaggaaagttttggaaacatgggtttgcactttcattc
tctagggagaccaagctttataattttagaactttgtatgttgaggtaaa
ttttgttttttctaaaattttgagcttggatatccaggctagtgtctgcc
aactaaaaatttctctgcggggtcactgcactggcaaggagttacgactt
cagactttagattccaattcttgtgtaggctgcaactacactgccaaatg
atctgtattacaaatacttccaaataggtccataagttaagaaaatgaaa
ttatcatctagcacgggggttttgtttttaaaaacaaacttcaaaataaa
attgttaatgaacttgttacttaaaatatcacNNNNNNNNNNNNNNNNNN
NNNNNatcacttacttacataatttatttatgatataacacccctttctt
aaataaatggcttcttaaagtcttttatgtttgccgcaagaagggagaaa
aatttaatttaatttgatAAAGCGCTCccacagcattaatctttgatacg
caatGCAGCAGGGTGCAAGTGTGACTAATTTTTAGATTAGGCTAGAGTTA
TCTCCTTTCTCTGTCCTAtttcaacaatacaatgctTACATAGTTGACAC
ATAATACACATTGACAGAAGTATTCTCCATGCAATGTTTAGGCTGACCct
caaaatatttccttttccGGTCCACCAGGTGACAACAAAAAAACACGTGG
TTGGCCGCAAAAAAGATTATCTTGCTAAATTTTGATCTCAAAACTCAAAT
TTTGGAAGTACTCAAGGAAGCACTCGGGGGGGGGGACTCAGAGTTTCtta
aagttacaaagaaagcgagttgataaaatgAGGTTTAGAGACGTTTATTA
AAGTGACGAAAAAAGCGAGTGAATAAACTGAGGTTTAAAGACGTTTGTTG
GGCGTTAGTAGTCTTCAAGAGGCAGGGGTGTTAAAGTCTTGTCCCCCACG
CAAGGGAAAGCACGAGTTCttccaaaattaattctttgGTAATCAAACGC
TAGAGAAGAAAACTAACTGTAGTCATTTTTCTATGACGTAAACAAAGATC
TCTACTAAATTCAACACGaaccaaacaataaaaaaaatccaatgtCTAAA
CAAAAGTTCAATGTGACAAAGCTCATCGAGACCACTTTATTTGTTTCGAT
TATTAATTCTAAGGATTGaattttttctaatctttaGTTATCAAACAAAA
GCGGGAATCTGATGTGagcgttattttttcaaagaatccttTACCTCCAT
TTGATTGGATACTTCTTTTTAAACAATCGCACAGCAATTTTTtgattgga
aaaaaatgaaacaattgaTATCGCAGTGATTGTATGGTAAAATATTTGGC
CCTTTCACGAGTGTTTGCAATTTAACAAGATAAATCAATGTGACTGAACG
TCTGTAAACCTGATAAAGACCTCCACTAAGAAGTTCGAAATATTGTTTGA
AATAAGATTTATATGAAGAATGACTATTTGAACTTACATAAATGAAGAAC
AATGTAAATATGGGTGATTTCTTAGTTTTTCTTCTATGTCTTCATGTACA
CCAATCCGGGGAGTCTCCATATATATACCATAGGAAAGTTCATGAAACCT
GCTAACTTTATTTTGAGTTTAGCAAATCCCCAAGATTGGCAAACAATCAT
TTTCGGCTTTTCACTTTGATCCTTTATCTGTTTCTTTTTGGGTCATGTTT
GGGGCATAATAGCAAAACATTGGTGTTCGGGCTAAGTTAAGGCAACAAAA
CTTTAGATTTTGCCTCTGAAAACCTGGCCTGAACATGCGCAGGGCAAGTT
TGGGTCATGTTAGGGCCAAGTTGGCACCTCTACTTTCATAAGCTAAATCT
TGGTACCATTTTCAATTTCCCAACTTTCTCTTGGAAAAAATCACAATATG
TGACTCCAAAGGCAGTTTTAAGTaattagaaaatagaaaattctataata
aaatcagcatttttaagtaaaaactcttaaccctattcaaactaggcttt
taggggcggttcagaactagggggggcttttcctgtaccaccccttaact
tttgatctagtgggtctttttggatgaaatttggcacacaagatccttgt
gacgtaaggtaacttttgacaaaaaaaattttttgatgacgtcactcatc
atgcccaaagtgagcaaaaaccgaaaatttcctttgttcttataaatagc
tattgtattctaacaaaggctttagaaaaaagttgcctgagtttaaaatg
cttattttatcctaaatattcaaaaaattacggtctaaacgatatatttg
acaatgaaaataaatttgtattgtaaaagtgtcaatttttgtgacacctt
actgtcagaaatgtcatcatgctcaaggtgtgaaaatatttaggtgacaa
atttttttttattttgaagctaaataaaagttaagaatttacagaaaatt
tcacggcaaaagctctattatttcaggagctattagaaatagtttgacct
ccgaacagaaagagccccccccccctagtacgaatagggttaatatCCCA
AGTAATTTTTGATTTACAAGTGCCAGAAATCTTCCCACCTGTCAAATAAA
ATCCCCTCCTAATTTTACAGATTCtaccatctgccaaattaataCCCgcc
aaaaattgcattttggccaaccgccaaattaagtacACATCGAAGTTGAT
ACACTTCGGCAACAAATACCTGGTTTTCTGAAAGTCCCATGctatattta
tttattcatgctttctttatttctttctgtttctatttcaaaaattgtct
aGTCAGAACAGTCTATAAGATTCTGAGTGTTTTTCTTGGAACGTTTTAAA
GAGGTTCAATGTTTCTGGTTGAAATCTGAAGATCATCTCGACTCTCAAAA
ACAATATCAAATCTGATCAGATATCAACTGTTAGATTATTAGATATTAAC
TGTCAATAAATCTTTAAAGGAAAACAGACTAAAAGCGGCCTGCAAAAAAC
AGGAACCTTTAGCTTTGCCAACTTTAAAGGCCCTAAGGCAATAAACAACT
TACTGAAGTGGATTCTTATCAGGTTTTAATATTGCCCAACAGCAGTTGGT
TTTAATATTGCCCAAATCCATCACCCACCCCCACCTCTAAGAGGTAACGA
AATATTTGGGCTGGAAGTTGCTAAGAATTTTAGCTGTTTCAATCATGTCA
GGAATCTGGGCTGTGTGAAGGTTATTTTTGAAGGGTTGTTTTAGAATTCC
TTTTAATTGTCAGGTTACTAGATAAACAGTGTTCTACTTGAAATAATATA
GAAAATATGGTGTTATTTTATGAAAGGGAATTTGAGAAAGGGGAATTCCC
CTTCTACAtgattttccaggaaaaattcaatttgGTCACATGAATTTCAC
TGTCAACAAATTTTTTGATATcttcatatttttaaacaatattcAATACA
GATGCAAACCTTTTGAGATGATTTGATGACAACTTGTTTTCACCTTTTCT
ATTTCTTCAGTGTTCAATCAATATATATCTTGTTTTTATATACAGAGCAA
CCTAACAGAAGAATGGGCAAGGGAGAGAAGAAACGCCCACTAAAAATTGT
CATGCCTCCTGTTCACCAAACGCAACCTCAACCAGTGTAAGacaatttca
ccattttattttatcattctCTAATTTAGCTCAATGGAGCATTTTTTTGC
ATATCGATTCTGCTTCATCATTAACATTTTGTTTAACAAGCAACTATATT
TTGCAATTAatgtatttttgtgaaaaaaaagctaaaaaacttGTTTAGTA
GGAACATCTCTAttgtttttagaaatgctccaAGGAATTTATCAGATAGA
ACCACATTAACTGTGAACAGCCAGGTAAGTAGTACGGCTTAATGAATAAT
ATTTGACTCATTGACACAATGTGTGACCAATCAAGTTTAAAGACAGTAAT
GGGATACTTACTTGAAATCCCGCAGACTTTCATAGTGGTATAAGGGTatc
aaccattgagtttaaaggcaaatgggctagagaggaatcttcagcCTTTC
TCCCCTTAAtttttgttctgtttttatgGGATGCCTGATGAGACTTTGCC
CTTTTTTGTTCTTGCATAATCCATTTTTCGAAACCAGCTAAGAGTTTCTC
TAACCccgcttcaaactcaatggtatcaaccaggccatattttagaaagg
caaggcagcgtccgttggtggccaaaaagggcactttttcttatgttttt
ccactaaaaaggctgtttttaccaatattttagtaatttcaagagGGGCA
GTGTCCGATAACCGGACgcttaaagggcatgaaaaatggcctgtcAACCC
CCTCACAGATATGACATCTCCTAGATTTTTTACTCCACTCCTTCCCCTAT
AGGAATGTGTTAGTGCTTTGATAGTTTGATGTTGTACCTATCATAAAATG
TCTATTGAATTTTCGCTCTTTTTCTTTCAGGATTACCCGTGCAGTACTGA
TGATTTGATAGAAATATGCGAGCTTGGTCGTGGGGCCTATGGGGTTGTAG
AAAAAATGAGACATAAACAAACTAACATAGAAATGGCTGTGAAGGTTTGT
TCATTCTCAAAATCCCAGATCTTGATTGAAAATCTTCATCTCTCTTCTTG
TTTTTTTAGATTGAACTAATTTTTGACTTTACTAAAAAGCATTGTTGCTA
CCTTTCAATTTACTTTAGCCCATTAGACCTTCATATGCAATGTCTAACTA
AGTACTTCAtgaaaatttacaataaaagtGACAAGTTATAGATTTAACTT
TTACTTACACACATATTTTTAGGACTTCAATTCAAATTCTAGACTGTTAT
ATTTGGTAACTTTGCTTATTTTATAGCGTATTAGGCACACGGTCAACACG
ACAGAGCAAGGTCGTCTATTAATGGATTTAGATGTTTCAATGAGACTTAG
TAATTACCCCTATGCCATCCAGTTTTATGGTGCACTCTTCAAAGAGGTAA
GTCTGATCTATTTTTTCAGGATATTCCTAAACAGAATAAATTTTCAcggt
taattttttttgatggacAGCATAGCTATTATATATCTTTAGGTTAAATA
TGTACGAACAAGGTGCTCATgttaatcttttgttttttttctaggGAGAT
GTTTGGATATGCATGGAACTCATGAAAACATCATTCgataaattttataa
aaaagttgcAGAGCAAGAAGGGGCTTTGATACCTGAAAAAGTACTGGGAA
AAATATCCTTCGCTGTAAGtgttctttgtttttttgattCGTGTTTTTAA
AATTCCAGTCCTTCTTTCATAGCAGATCCATCCTGCGCAAACCACGCTCT
GCTGTAAAGTGATGGCGTGAATGTGacgatctgacctggttgttcagcTA
AAACAATCAAAACCGCACCACCTCttgcgaaagtgaaagtgcatGGCCAT
TCAAATTTGTTCAAGTCAAATGCAAGGAACATGCATATCCCTTCAAATTA
CACAAATAAATAAAGTCACAGTCAATTTAAGGTCGATTCTTGACTATTTT
TAATACAGGTGTTTCTTAAAAACGAAATTCTTATATgaatactttttgct
ttttcagGTTGTTTCTGCATTGGAATATTTACATAGTAAAATGAAAGTAA
TCCACAGAGGTGAGATAATTATTCGGTTATAAGTTGTTCCCAAAGACAAT
GAAAATTTGGGTAAAGTTCTTCGAAAAATTCTCAATCCCTTATAATTAAT
TACGAATTCATCAGAGTAAGCATTCACCCACGACTTATAACTTGTTATCG
AAGCTTATAAATATAGCTGAATCTATAGATTTTATCATTCCCTGAGGATG
GAANAAAGCTTAGAAATATACCTGAATCTATAGATTTCATCATTCCCTGA
GGATGGAAATcttgaatgttttttatttacgaTGAAATCTTTCTTAGATG
TCAAACCGTCCAATATATTAGTTAATGATAACGGAGAGATCAAATTATGT
GACTTTGGAATCAGCGGACAACTGGTTGACTCTCTGGCAAAAACCCTTAC
AGCTGGCTGTAAGCCCTATATGGCTGTATGTTATAAAATACTTATACTTT
ACTGATAACTCCTGTTATTCTACTGTCTCTCTCTTTTCATCTAACACAAG
TTCTATACGTTCTTAAATGACCTTCTGATTGCTGTTAAGCTTTCTCATTC
CCAGGGGAAACATTTCAGGTGCATTTCCAGGATCTTTCTAATGTTTTTCC
TGGGTATACtggaaaaataattcttttgcTGCTTGCAAATACGTAACAAA
CAATGGCCTTGTGACTGACCACCTAATAAGTTGAAGCTACTTTCCTACCT
ACCCAGAGCGTTGGTTTTTTACGTTGTTAAAGTGGCGATAGGAAAGCTTT
GCCGTGAATGAGAAAGATTAAGCCATTCTATGTTATATTTGACGGTTGAG
TCTGTCAGGTTCACGAACTAAATAAATCAAATccgataaaaaaaaattct
tctttggAAGTGTTTACACCGCAACATTACCCTAACTTTCGAAAGTCTGT
TCCGACTTAGAAATCAACTTCCAAAGCAAAACCAATAAGTAGTGAACAAG
AATTTCGTCACCGGTAAAGTAGCAAACTTCCCTTAGGTAGGGCGATTCTC
TGAGGTTTCCACTGCGTTAAGGTAAAATTAACTTTAAAAGTATTTAAATC
GAGCTACATTTTACATTTCAGCCTGAACGTATCAACCCAACGAAGGGACA
ACATGGTTATGATATACGTTCTGATGTGTGGAGCTTAGGAATCACCATGG
TTCGTTTGAATGATTTTTCCACTCATATTCTCaatttcagttgagctaga
atctgagaatgtatGTCAGTCAGTCTGTATGTCAGTCACctcaaaacttt
agggcaggctggagacttcaaaaatggtccgattcggctgaaattttgta
cacttgctccttgggtgaatacctgggggtgtttttttcatttttttttc
attttttttccaaattctgATTCtaacaatctttttttttttattccatt
ttttttattgttacaattgggcctacgagtAATTAAGAAGATACCGAAGT
TGATctagtgcggttagcacgttcgacagttttGTCACTGTTGCTACACG
TTTTGGATGAAATTAATACAATGAACTCTagctttaactcgaacctctat
aactggaATGTCTTCTTATTTCGAACAAGTTTAATGGTCCttttagttaa
caatgccttataagccttactccataactcgatatttccttaactcgaac
agatTTATGTTCCCTGCgcgtgttcgaattatggaatcTCCACTGTATAA
ATTTCAGTTTTCTGATTTGTTTACATACAGGAGTCGTCAATTTTCATCGC
TAATTTTTAATACGAaatttactttaatgggataaactttcgcggggatg
ggtctatccgcgaaattcaaaaacttcGCCGGGACTTGATTTCGCGGATG
AGGAGTTCCCTGAGTTTTCGTATAATTTCGCTGACCaggattaaattaaa
tttttctaaagtgattgcaaattttgcaaaatcggGGTAGCAAACAGAAC
ttctctcaaaattttgatattgtagtatgtgaaaattcgaaaaataatgA
AGAGACTTTCTTCCAAGCAGCAGGGTTTGAGTAGTCTGATTTGCGGGACG
AAAAACCGACgatagaaatttgaaattttcgcgaatcgaagaaagatttc
aatcatttcgcgggtacttaatttcgcggatgaggcccttccaaattttc
attgggacttaatttcgcggatttttgcggatgacacccaaatccgccag
aaatctgcgaaatttaatccccgcgaaagtttatcccattaaaagtAGGT
GACATGACTTGTGCCGTACTCCTAGATTTCAACATTACTAACAGAACTTT
TGGACGCGtgtattttaaaaacaatttttcttcACCTTTCatttctaaat
aaataaaataaataaataagtcaGACCTGAAGTCTGTTTCCGCCATCAAA
TTTGAAGATTGCAttgtatttttttatcattgagTTGATAAGCAGGTCGG
AATATTGTTTATTTCAACTCGTATAAGAATGACCATGGAAATGTATACTT
ACTCCATTCACTTTTagtgtattcatgatatgcaccattgcaatgtcttc
tgacattacatcatggaccaaatagctgattggttgtaagtgacgtaaga
tcagtcaatacgtcactttcagccaatcagctgttgggtatGTGGAAGAC
ATGGTATTCTATTAGTGAGATTTCCACATGGTAGCAAAAAAGAGTGCACG
CTTAAAGCGAATgtatttattgtttattttaacTCGCATAAGAATGACCA
TGGAAATATATACTATAGTCCGTTCGTTTAAATGCGTACTCTTTGCTACG
GTGTAGAAACCATGTCAGCGTGATTCAGACTAATTCCCTTGGGACTGGTT
TCCACTTGGTagcaaaaaagagtgcacacttcaAGCGAATGTATTTTAAA
TTATATTTCAATCCAGGTCGAACTGGCATGTTTGAAATTCCCCTACAGCA
GGTGGACAACACCTTTCGATCAATTAAAAGCAGTGGTAGAGGAGCCTTCG
CCTACGATACCATCCGAACATAATTATTCTGATGAACTTCATCAATTTAT
TTCACTTTGGTAAGAACTTTCTCTTTTGCTTGGCTAGTTAGGTTGTTCCA
TTTAGTATCCATCCAGGGCAGtgaaaatattccaagtcaaaaataattct
tgaaaatattgGANTTATCTTTCCAGGTCGAACTGGCATGTTTGAAATTC
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041298XLOC_041298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065910-exon-scaffold_448-1491911889:528590..528855TCONS_00065910-exon-scaffold_448-1491911889:528590..528855Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:528590..528855TCONS_00065910-exon-scaffold_448-1510915933:528590..528855Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:528590..528855TCONS_00065910-exon-scaffold_448-1575043694:528590..528855Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:536285..536375TCONS_00065910-exon-scaffold_448-1491911889:536285..536375Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:536285..536375TCONS_00065910-exon-scaffold_448-1510915933:536285..536375Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:536285..536375TCONS_00065910-exon-scaffold_448-1575043694:536285..536375Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:536562..536613TCONS_00065910-exon-scaffold_448-1491911889:536562..536613Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:536562..536613TCONS_00065910-exon-scaffold_448-1510915933:536562..536613Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:536562..536613TCONS_00065910-exon-scaffold_448-1575043694:536562..536613Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:537220..537333TCONS_00065910-exon-scaffold_448-1491911889:537220..537333Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:537220..537333TCONS_00065910-exon-scaffold_448-1510915933:537220..537333Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:537220..537333TCONS_00065910-exon-scaffold_448-1575043694:537220..537333Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:537616..537735TCONS_00065910-exon-scaffold_448-1491911889:537616..537735Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:537616..537735TCONS_00065910-exon-scaffold_448-1510915933:537616..537735Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:537616..537735TCONS_00065910-exon-scaffold_448-1575043694:537616..537735Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:537884..538003TCONS_00065910-exon-scaffold_448-1491911889:537884..538003Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:537884..538003TCONS_00065910-exon-scaffold_448-1510915933:537884..538003Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:537884..538003TCONS_00065910-exon-scaffold_448-1575043694:537884..538003Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:538347..538398TCONS_00065910-exon-scaffold_448-1491911889:538347..538398Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:538347..538398TCONS_00065910-exon-scaffold_448-1510915933:538347..538398Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:538347..538398TCONS_00065910-exon-scaffold_448-1575043694:538347..538398Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:538687..538814TCONS_00065910-exon-scaffold_448-1491911889:538687..538814Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:538687..538814TCONS_00065910-exon-scaffold_448-1510915933:538687..538814Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:538687..538814TCONS_00065910-exon-scaffold_448-1575043694:538687..538814Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:539461..539538TCONS_00065910-exon-scaffold_448-1491911889:539461..539538Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:539461..539538TCONS_00065910-exon-scaffold_448-1510915933:539461..539538Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:539461..539538TCONS_00065910-exon-scaffold_448-1575043694:539461..539538Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1491911889:541566..541591TCONS_00065910-exon-scaffold_448-1491911889:541566..541591Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1510915933:541566..541591TCONS_00065910-exon-scaffold_448-1510915933:541566..541591Clytia hemisphaericaexon
TCONS_00065910-exon-scaffold_448-1575043694:541566..541591TCONS_00065910-exon-scaffold_448-1575043694:541566..541591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:528590..541591 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0838594	6.17546	3.96275e-09	0.664273	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00358894	0.00183282	0	0	0	0
Blast
[Close]
BLAST of TCONS_00065910 vs. Swiss-Prot (Human)
Match: MP2K6 (Dual specificity mitogen-activated protein kinase kinase 6 OS=Homo sapiens GN=MAP2K6 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 9.501e-108
Identity = 157/254 (61.81%), Postives = 196/254 (77.17%), Query Frame = 2 
Query:  290 KGEKKRP-LKIVMPPVHQTQPQPVNAP-RNLSDRTTLTVNSQDYPCSTDDLIEICELGRGAYGVVEKMRHKQTNIEMAVKRIRHTVNTTEQGRLLMDLDVSMRLSNYPYAIQFYGALFKEGDVWICMELMKTSFDKFYKKVAEQEGALIPEKVLGKISFAVVSALEYLHSKMKVIHRDVKPSNILVNDNGEIKLCDFGISGQLVDSLAKTLTAGCKPYMAPERINPTKGQHGYDIRSDVWSLGITMVELACLKF 1045
            KG+K+ P LKI  P     QPQ  + P R+L  +  +++ +Q++    DDL  I ELGRGAYGVVEKMRH  +   MAVKRIR TVN+ EQ RLLMDLD+SMR  + P+ + FYGALF+EGDVWICMELM TS DKFYK+V ++ G  IPE +LGKI+ ++V ALE+LHSK+ VIHRDVKPSN+L+N  G++K+CDFGISG LVDS+AKT+ AGCKPYMAPERINP   Q GY ++SD+WSLGITM+ELA L+F
Sbjct:    5 KGKKRNPGLKI--PKEAFEQPQTSSTPPRDLDSKACISIGNQNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRF 255
The following BLAST results are available for this feature:
BLAST of TCONS_00065910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MP2K69.501e-10861.81Dual specificity mitogen-activated protein kinase ... [more]
back to top