TCONS_00065888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065888
Unique NameTCONS_00065888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065888 ID=TCONS_00065888|Name=TCONS_00065888|organism=Clytia hemisphaerica|type=transcript|length=430bp
CTGGATGTGAACTTGCCGATTGCAACGAAGTATGGCCTGAGGTTGATCTG
GATTGTTGTGCAGAAGTACTGTCTGGGTGTGAATCTGGCAATGACAAAGC
GGTATGGTCTGAGGGTGTTCTCGCTTGTTGTACAGAAGTACTGTCTGGGT
GTGAATTTGTCGATGGCAAAGAGGTATGTTGTGAGTCTGTTGAGTGCAAA
GAGAATTGAAATGAGGATAACCCAGCTTGTTGGTCGGCGGCATCATTAGA
AAACGGATGGACAGTCTGTATGGGTGTAAACAGATAACCATCTAGATTTG
AAAAATCTGGTTCTTCGTCATAGTAAGGAAAGTCAGATTTTGTTCTCTTA
CTTGGCGGACACTGGTCATTTTTGTCTTCGTCATTCCTTTCGTCTTTTTC
ATGGTTCTCTGACATCAAACTTTTTTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00065888-protein

>TCONS_00065888-protein ID=TCONS_00065888-protein|Name=TCONS_00065888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
IEKSLMSENHEKDERNDEDKNDQCPPSKRTKSDFPYYDEEPDFSNLDGYL
FTPIQTVHPFSNDAADQQAGLSSFQFSLHSTDSQHTSLPSTNSHPDSTSV
QQARTPSDHTALSLPDSHPDSTSAQQSRSTSGHTSLQSASSHP
Run BLAST on NCBI

transcript from alignment at scaffold_447:510979..511408

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065888 ID=TCONS_00065888|Name=TCONS_00065888|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_447:510979..511408 (Clytia hemisphaerica)
ATTGAAAAAAGTTTGATGTCAGAGAACCATGAAAAAGACGAAAGGAATGA
CGAAGACAAAAATGACCAGTGTCCGCCAAGTAAGAGAACAAAATCTGACT
TTCCTTACTATGACGAAGAACCAGATTTTTCAAATCTAGATGGTTATCTG
TTTACACCCATACAGACTGTCCATCCGTTTTCTAATGATGCCGCCGACCA
ACAAGCTGGGTTATCCTCATTTCAATTCTCTTTGCACTCAACAGACTCAC
AACATACCTCTTTGCCATCGACAAATTCACACCCAGACAGTACTTCTGTA
CAACAAGCGAGAACACCCTCAGACCATACCGCTTTGTCATTGCCAGATTC
ACACCCAGACAGTACTTCTGCACAACAATCCAGATCAACCTCAGGCCATA
CTTCGTTGCAATCGGCAAGTTCACATCCAG

Coding sequence (CDS) from alignment at scaffold_447:510979..511408

>TCONS_00065888 ID=TCONS_00065888|Name=TCONS_00065888|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_447:510979..511408 (Clytia hemisphaerica)
ATTGAAAAAAGTTTGATGTCAGAGAACCATGAAAAAGACGAAAGGAATGA
CGAAGACAAAAATGACCAGTGTCCGCCAAGTAAGAGAACAAAATCTGACT
TTCCTTACTATGACGAAGAACCAGATTTTTCAAATCTAGATGGTTATCTG
TTTACACCCATACAGACTGTCCATCCGTTTTCTAATGATGCCGCCGACCA
ACAAGCTGGGTTATCCTCATTTCAATTCTCTTTGCACTCAACAGACTCAC
AACATACCTCTTTGCCATCGACAAATTCACACCCAGACAGTACTTCTGTA
CAACAAGCGAGAACACCCTCAGACCATACCGCTTTGTCATTGCCAGATTC
ACACCCAGACAGTACTTCTGCACAACAATCCAGATCAACCTCAGGCCATA
CTTCGTTGCAATCGGCAAGTTCACATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041286XLOC_041286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065888-exon-scaffold_447-1491911889:510979..511408TCONS_00065888-exon-scaffold_447-1491911889:510979..511408Clytia hemisphaericaexon
TCONS_00065888-exon-scaffold_447-1510915933:510979..511408TCONS_00065888-exon-scaffold_447-1510915933:510979..511408Clytia hemisphaericaexon
TCONS_00065888-exon-scaffold_447-1575043694:510979..511408TCONS_00065888-exon-scaffold_447-1575043694:510979..511408Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065888-proteinTCONS_00065888-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:510979..511408 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1893	0	0	0	3.16282	2.58895	1.56325	2.97539	0.575767	0.562889	0.190381	0.320742	0.246371	0.370134	0.330961	0.195648	0.868264	0.528975	0.384382	0.459504	0.540675	0.254774	0.871858	0.605684	1.5304	0.580702	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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