TCONS_00065887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065887
Unique NameTCONS_00065887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065887 ID=TCONS_00065887|Name=TCONS_00065887|organism=Clytia hemisphaerica|type=transcript|length=474bp
CGGAAATAACTGGAAAAATAGACGAACGAAAATCCGAGGAAATTGGTTCT
TGTACCCCATCAAGCTGCCTCATCCATGCAAACACAAATAAAAAGGACAC
TTTACAATGCAAGAAATGCAAACGTCGAGTTCATTTGGCTTGCTCTGAGC
TTCCTCCTTATCAAATCCAGCTTTATCTTCAACACAAATCTAGAAGCTAT
CAATGCATGAGCTGTGTGATCATAACACCAGAATTGAAAAAGAAATTGAA
CTTCAAGTCTGTTGGAGATTTACAAAAAGATATCGATGCATGTGAGAACA
TAATAAAAGCACAACGGGAGGATATTTCAAATTTGAAGGCTAAAGTGTCA
ACTAACAATGTGAATAAAGCAGTCGCAGAAATTGAAAACACCTTCAATAA
AAGAATTGACGTGCTGGAaggcaaaataaataaaatctcaaACAAGAAAT
CTTCGTCTGTGAATGAAATTGCTT
Run BLAST on NCBI

protein sequence of TCONS_00065887-protein

>TCONS_00065887-protein ID=TCONS_00065887-protein|Name=TCONS_00065887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
EITGKIDERKSEEIGSCTPSSCLIHANTNKKDTLQCKKCKRRVHLACSEL
PPYQIQLYLQHKSRSYQCMSCVIITPELKKKLNFKSVGDLQKDIDACENI
IKAQREDISNLKAKVSTNNVNKAVAEIENTFNKRIDVLEGKINKISNKKS
SSVNEIA
Run BLAST on NCBI

transcript from alignment at scaffold_447:501359..501832

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065887 ID=TCONS_00065887|Name=TCONS_00065887|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_447:501359..501832 (Clytia hemisphaerica)
AAGCAATTTCATTCACAGACGAAGATTTCTTGTttgagattttatttatt
ttgcctTCCAGCACGTCAATTCTTTTATTGAAGGTGTTTTCAATTTCTGC
GACTGCTTTATTCACATTGTTAGTTGACACTTTAGCCTTCAAATTTGAAA
TATCCTCCCGTTGTGCTTTTATTATGTTCTCACATGCATCGATATCTTTT
TGTAAATCTCCAACAGACTTGAAGTTCAATTTCTTTTTCAATTCTGGTGT
TATGATCACACAGCTCATGCATTGATAGCTTCTAGATTTGTGTTGAAGAT
AAAGCTGGATTTGATAAGGAGGAAGCTCAGAGCAAGCCAAATGAACTCGA
CGTTTGCATTTCTTGCATTGTAAAGTGTCCTTTTTATTTGTGTTTGCATG
GATGAGGCAGCTTGATGGGGTACAAGAACCAATTTCCTCGGATTTTCGTT
CGTCTATTTTTCCAGTTATTTCCG

Coding sequence (CDS) from alignment at scaffold_447:501359..501832

>TCONS_00065887 ID=TCONS_00065887|Name=TCONS_00065887|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_447:501359..501832 (Clytia hemisphaerica)
AGCAATTTCATTCACAGACGAAGATTTCTTGTttgagattttatttattt
tgcctTCCAGCACGTCAATTCTTTTATTGAAGGTGTTTTCAATTTCTGCG
ACTGCTTTATTCACATTGTTAGTTGACACTTTAGCCTTCAAATTTGAAAT
ATCCTCCCGTTGTGCTTTTATTATGTTCTCACATGCATCGATATCTTTTT
GTAAATCTCCAACAGACTTGAAGTTCAATTTCTTTTTCAATTCTGGTGTT
ATGATCACACAGCTCATGCATTGATAGCTTCTAGATTTGTGTTGAAGATA
AAGCTGGATTTGATAAGGAGGAAGCTCAGAGCAAGCCAAATGAACTCGAC
GTTTGCATTTCTTGCATTGTAAAGTGTCCTTTTTATTTGTGTTTGCATGG
ATGAGGCAGCTTGATGGGGTACAAGAACCAATTTCCTCGGATTTTCGTTC
GTCTATTTTTCCAGTTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041285XLOC_041285Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065887-proteinTCONS_00065887-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065887-exon-scaffold_447-1491911889:501359..501832TCONS_00065887-exon-scaffold_447-1491911889:501359..501832Clytia hemisphaericaexon
TCONS_00065887-exon-scaffold_447-1510915933:501359..501832TCONS_00065887-exon-scaffold_447-1510915933:501359..501832Clytia hemisphaericaexon
TCONS_00065887-exon-scaffold_447-1575043694:501359..501832TCONS_00065887-exon-scaffold_447-1575043694:501359..501832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:501359..501832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.230177	1.10764	2.46124	2.64395	0.789091	0.811716	1.15341	2.71164	0.736847	0.51877	0.337343	0.654475	1.75137	1.88142	1.46659	1.44342	0.546071	0.520536	0.998684	1.37368	1.96767	0.781063	1.18959	0	0.574957	1.40768	1.19034	0.690408	0.603026	2.81055
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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