TCONS_00065880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065880
Unique NameTCONS_00065880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065880 ID=TCONS_00065880|Name=TCONS_00065880|organism=Clytia hemisphaerica|type=transcript|length=397bp
AACCAATTTGGtcgaaaattattgaaaattgtgGTACGTATGCTAACAGA
AATAGTGATGCACAGTTTACAGAGCTTTTTTCAGATAACCTTTTCATGAT
TTTATCAGAAGGCGAGAAAAGATAGTTTGAAACAAGATTTGATGTTCGAG
GAACTTGCCCTGTTTGTGATAACGAGAGACAAAGTAAAACAGGTATCATT
ATTGCTCTTCTTACAGACTTTTTATATCCAGAGATTACTATTGACTCAAA
CAACTGGCCAGATTGTGTGAATAGAGCTCTTGATCCAAGTACAGAAGTTT
ATTGTAATATTTGTTCTGTCAATATTCCTGCCCAGCATCAATCTGTTGAC
CTTCCATGTTACTTGTTGATAGAATTTAGTTCTACAATTCACAACAG
Run BLAST on NCBI

transcript from alignment at scaffold_447:320666..321062

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065880 ID=TCONS_00065880|Name=TCONS_00065880|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at scaffold_447:320666..321062 (Clytia hemisphaerica)
CTGTTGTGAATTGTAGAACTAAATTCTATCAACAAGTAACATGGAAGGTC
AACAGATTGATGCTGGGCAGGAATATTGACAGAACAAATATTACAATAAA
CTTCTGTACTTGGATCAAGAGCTCTATTCACACAATCTGGCCAGTTGTTT
GAGTCAATAGTAATCTCTGGATATAAAAAGTCTGTAAGAAGAGCAATAAT
GATACCTGTTTTACTTTGTCTCTCGTTATCACAAACAGGGCAAGTTCCTC
GAACATCAAATCTTGTTTCAAACTATCTTTTCTCGCCTTCTGATAAAATC
ATGAAAAGGTTATCTGAAAAAAGCTCTGTAAACTGTGCATCACTATTTCT
GTTAGCATACGTACcacaattttcaataattttcgaCCAAATTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041278XLOC_041278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065880-exon-scaffold_447-1491911889:320666..321062TCONS_00065880-exon-scaffold_447-1491911889:320666..321062Clytia hemisphaericaexon
TCONS_00065880-exon-scaffold_447-1510915933:320666..321062TCONS_00065880-exon-scaffold_447-1510915933:320666..321062Clytia hemisphaericaexon
TCONS_00065880-exon-scaffold_447-1575043694:320666..321062TCONS_00065880-exon-scaffold_447-1575043694:320666..321062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:320666..321062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754846	0.591983	0.909395	0.952798	0.408314	1.0055	0	1.15392	0.47707	0	0.38238	0.639485	0	0.140062	0	0	0.424995	0.435606	0.601813	0	0	0	0	0	0.727497	1.62743	1.04192	0	0	0.781976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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