TCONS_00065870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065870
Unique NameTCONS_00065870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065870 ID=TCONS_00065870|Name=TCONS_00065870|organism=Clytia hemisphaerica|type=transcript|length=749bp
CAACATTTTATTATGATAAATGATTTGTTGTATTACACTCACAAAATTCT
AAGTAATAATTAGTAAAAAACTGTCCAAGAAGGGAGCTGAATATTACTAC
TCAGTAAGAAAACTGTATATATTATAGAGAATGTAAATCTAAATGTTGCA
AAGAGTAGGACTAACGTAACTATTACATAGAGAAGGAAGATCTGCTTCca
aaaaagagacaaaactAGAGTTTTGCCTATTGAGTAACGATAAAGGACTT
TATTtccaagaatatttcaagaaaacaataCTTCATTTTTTGGTTAGAAT
AAGAATGCTCCAAAATCTTTGCTGGAAAGAAATAATCAACAAGTTTTGAA
CTAAATCGGTTGTTGTTTGGTCTGTAAATGGGAAACTGAataaaaaggtt
taaaaatcgTATAATCAAATACTATGCATCGATTtatacaaaaatattca
aacttGTTTTATATTGGCACATTCAGATAGAAGGTTCAGGAAAAGAAGAT
TTGCAAATGACACAACTCAACAGTGTCTTTTCCAAAACGTTTAACTCGCT
TCAAGCTACGAGCAACTTTCAAACTCACAATTATCTgggtttttttcaat
tttagagaTCATTGGAAATATTTACCAAAACATAATATAAATAACAGCAT
TCGAAAGTGTTCTCTTGAGAAAATAGTCAGTAGGCTTTTGGGCCAGCAGT
TGTACGTAAATTGCTATTTTTTATAGTAACCCACTCTTACAATTAACAA
Run BLAST on NCBI

transcript from alignment at scaffold_447:201192..201940

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065870 ID=TCONS_00065870|Name=TCONS_00065870|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at scaffold_447:201192..201940 (Clytia hemisphaerica)
TTGTTAATTGTAAGAGTGGGTTACTATAAAAAATAGCAATTTACGTACAA
CTGCTGGCCCAAAAGCCTACTGACTATTTTCTCAAGAGAACACTTTCGAA
TGCTGTTATTTATATTATGTTTTGGTAAATATTTCCAATGAtctctaaaa
ttgaaaaaaacccAGATAATTGTGAGTTTGAAAGTTGCTCGTAGCTTGAA
GCGAGTTAAACGTTTTGGAAAAGACACTGTTGAGTTGTGTCATTTGCAAA
TCTTCTTTTCCTGAACCTTCTATCTGAATGTGCCAATATAAAACaagttt
gaatatttttgtataAATCGATGCATAGTATTTGATTATAcgatttttaa
acctttttatTCAGTTTCCCATTTACAGACCAAACAACAACCGATTTAGT
TCAAAACTTGTTGATTATTTCTTTCCAGCAAAGATTTTGGAGCATTCTTA
TTCTAACCAAAAAATGAAGtattgttttcttgaaatattcttggaAATAA
AGTCCTTTATCGTTACTCAATAGGCAAAACTCTagttttgtctctttttt
gGAAGCAGATCTTCCTTCTCTATGTAATAGTTACGTTAGTCCTACTCTTT
GCAACATTTAGATTTACATTCTCTATAATATATACAGTTTTCTTACTGAG
TAGTAATATTCAGCTCCCTTCTTGGACAGTTTTTTACTAATTATTACTTA
GAATTTTGTGAGTGTAATACAACAAATCATTTATCATAATAAAATGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041268XLOC_041268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065870-exon-scaffold_447-1491911889:201192..201940TCONS_00065870-exon-scaffold_447-1491911889:201192..201940Clytia hemisphaericaexon
TCONS_00065870-exon-scaffold_447-1510915933:201192..201940TCONS_00065870-exon-scaffold_447-1510915933:201192..201940Clytia hemisphaericaexon
TCONS_00065870-exon-scaffold_447-1575043694:201192..201940TCONS_00065870-exon-scaffold_447-1575043694:201192..201940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:201192..201940 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.328498	0.0640674	0.0743884	0	0.354398	0.0700125	1.09807	0.948925	0.664365	0.274308	0.133125	0.306289	0.262168	0.0453774	0.522289	0.360319	0.641165	0.252759	0.3492	0.0730826	1.58805	2.23083	0.225989	0.547886	0	0	1.35131	0.673004	0.656292	0.371477
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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