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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065856 ID=TCONS_00065856|Name=TCONS_00065856|organism=Clytia hemisphaerica|type=transcript|length=1247bp
CTTTCAACTGCATTCTATGTCACAATTTTGATGATATTGATTGGAGTAAC
TTGTTTATGTTTTCGCTTGCGTGTTGGAGGTTTTGGAACAGTTACCCGAA
CTTCTGGTGCAACTCGGAGGAGATGCTGCTCGACCATGGTCTGTAATCGT
TTTTCAGCAGGTTTGTGAGATGCATATGTTTTTCGAAGACTATTGAACTC
TGGATGAATACTCTCCGCACCTTGTTCGCCATACATACCAAGACCAATAC
GCCACTTTTTGATGAActttagaatgtgacactcgaGCATATGAAGTTTG
ATTGTGATTGATTGTTTAAAGTTATCACGGTAGTGCACAAAGAACTTTTT
GATTGCTGTATCTGATGAAAAAGACAAGGATCCTGATTGCTTACCCTTGA
CCCATCAGTGTTGAATGATATTGACTTGTCACATGATTGGGATAGTTTGG
TTTTAATTATGTGTACTGCAGCTTCTTCATAATCTCGTGGAACCTTATCA
CCGGTAGTTAACGAGAATACATCCTTCAGTTTGATTTCAGTAGTTGATGT
GGCTGGTTTTAATCTGTTTATGATATCAATTGTTTGTTGAGAAAATATGA
CACCTGATGGGGAGACCAATGAAGTACATGATTGACATGGACATTTGCAT
TTTTCAAGTCCATGACCTTCAATGTGACTCAGTAGACACATCAAACATAC
TACGTGCTGACATGATGATACCAAAACTGGTTTATCAAAGAGTTTTTGAC
AAACTGGACACTTAACCAAATCTGTGAAGTCATCTTGAAGAAAGGAAGTC
AAAGGAATATCGTTGTTGTCTGTTTCTTTCAGAGAATCTGGAATCTGCTG
GATCAAAGCAAGTATGTTGTTACGTGTCCATATCGTGGGAACTGGCGATT
TTGATGGCCGTCCACCCTGCTTTTTGGTCTTCTTTGGGCGACCTGGACTA
TTTCGTGAAGTATCAGCTCTTGAGCAAACCCAACAACCATCATCAGAGTG
CAAGGGCCAATTTATGACTTGATGTTTTACCGTAGAACCCCGCTTTTTGA
TGGCATTCAGCTGGGCACAGCACTTGAGGCATATATATTTTGGATGTTTA
CGATCCTCATCTTTTCTAGTTTTAAGGTAGAAACATTCCAAAATATCTTC
GGATTTGCTATCCACCAAAACTCCAtcattaagaatattttcccCACAAA
TTCTACACAgtctttgtaaattttcttgATGAGGATCCACCATTTTT Run BLAST on NCBI transcript from alignment at scaffold_447:354048..359329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065856 ID=TCONS_00065856|Name=TCONS_00065856|organism=Clytia hemisphaerica|type=transcript|length=5282bp|location=Sequence derived from alignment at scaffold_447:354048..359329+ (Clytia hemisphaerica)
CTTTCAACTGCATTCTATGTCACAATTTTGATGATATTGATTGGAGTAAC
TTGTAAGTAGAAAAATTCACTATTTATAACATGAACaggcttaaaaaatt
gaatttgaccTTTGTACTGTAagtacaaaaaaaatataaatataatcATG
AATGCAAATTTAAACTTTATATATACATTATGAACAAGTgtacaattttg
ataaaaagtggattttttaaagataaataAATACTAGAGGAACTGTGAAG
GATATTCAATGTAAAAATTAGTTGTGTTGTATAATGCTTTAAANAAATAT
ATACTAGGAACTGTGAAGGATATTCAATGTAAAAATTAGTTGTGTTGTTA
TAATGCTTTAAAATcaataatatatatatattactCTTCAGGTTTATGTT
TTCGCTTGCGTGTTGGAGGTTTTGGAACAGTTACCCGAACTTCTGGTGCA
ACTCGGAGGAGATGCTGCTCGACCATGGTCTGTAATCGTTTTTCAGCAGG
TTTGTGAGATGCATATGTTTTTCGAAGACTATTGAACTCTGGATGAATAC
TCTCCGCACCTTGTTCGCCATACATACCAAGACCAATACGCCACTTTTTG
ATGAActttagaatgtgacactcgaGCATATGAAGTTTGATTGTGATTGA
TTGTTTAAAGTTATCACGGTAGTGCACAAAGAACTTTTTGATTGCTGTAT
CTGATGAAAAAGACAAGGATCCTGGTAAGTGGAACTTATACTATACAAAT
TTCCAATATTAATTCCCCTTTTTAAAATCACCAACCAAAGAGACATTATG
GTTGGTACGGACAGAATTTTGAATGTTTAATTTAAAGCGGGTATTCAAAA
ATAGACAATCATACTGGATAtcacaaaaaaaacatacctAGCTGCTGAAT
TTTTTCATCATTGAAATAATCAGATGAGTTCATGAGTCGATGACAAACAC
CATAATTATCCATCAATTCTTTAAATCTCTTGCTGATATCACATGCACGT
ATGTGGGCAGGGGTGTCGATCAAACCAAATTCATCGTAAACTAGTTTAGG
AATGCTGTGACATAGCTTGcgaatgtttttttcctgaaagATAGAAGTTT
TAAACATTGTAAGtggattaaattaaatttggtcTTACTTCACATCATGA
ATTTTTTAGGTACTTGGTAGGATATGGAAATTAGCTccaagcaaaatttt
tgatattgcTCCACAGTAATTATATCTAAATTgtatatttcatgaaaaaa
gagCATTTTTACGGTCTTTcgcatttttaaaattttcaaaaggattTTTA
TCAATGTATCTTGGACTTTNATTTTTACGGTCTTTTgcatttataaaatt
ttcaaaaggattTTTATCAATGTATCTTGGACTTTTGATACGTACGTGCA
ACATTTTATGAACATCGTTTCCTATAAATGATCTTCCGTGATATGCCTGT
CTTTGAACACCGACCGATTGTAGAACCTCGTCAAGTTTTCTGTAGCAAGG
ACCACAACTGGCATTGATTGTCAATTCATTCTCTAACTCGTCAATCTCTG
CAagctgaaaagaaagttaaaatatACCTTTTTGGAACTGGCTTTTttag
tggttgaaaagaaaatcagaaaattgaatttcctaggaaataattctttt
caattttgacctttttcggACCAACTTCATTTCCCTAGggcttttgaaga
attttcagaACATTTTATCTCACTGGTTcaaatttcaaggtttttcggaa
aataaaactgtgcaaaatgcaaaaattaattccccaaaaattgttttgtt
ataATATAATTATAGCTTTTATTACCTTCTTACAGAGTACTTCATTCAAC
ATGTCTATTCTTTCATTATAAATTGTTCTAATCCTCTCTTCTTCATCAGG
GTTATTGCAAATATTTACTCTAATTGCTTATTGGACAAGACAAATTTTGT
GATGACAATCTTGGGCGNCAAAAATTAATTCcccaaaaattgtttaaaat
gttATAATATAATTATAGCTTTTATTACCTTCTTACAGAGTACTTCATTC
AACATGTCTATTCTTTCATTATAAATTGTTCTAATCCTCTCTTCTTCATC
AGGGTTATTGCAAATATTTACTCTAATTGCTTCTTGAACAAGACAAATTT
TGTCATGACAATCTTGGGCATTAAATTCaagattttggattttcttaagG
ATTtccacatttttcaaaacatcttcACGTGTGATTTCAGTATTCTCGTC
TTTTTCTGCCAGGTCTCCAAGGATCTCCATGTCTAACAGTCTGCACTCAT
CTTCAAgcatgttgaaaattttaagataaGTTCCAAGGCTGATGTGGAGT
GCAGGAATGGCAAcctacaaaaaaagaaaataatacgtCTATCAATAAAC
ATTGGTTGATCGGTTCCTGCGCTAATAAGTCCAGTCCCAcaaataataat
tataaaagATCAGTCTTataatgaaaatagaattaTTTGGAATTCTATAC
CTGATCAAGTGGAATATTTACAATAGGTTCATGAATAACATTGTCAAATT
TCTTTGCGTTGCCAATGATCCCACCTGCCGCTTCAAATTCTTCTAATTTT
GTTCGCAAGGTCTCAAGTGTTCGTTCTGTAATTAATTTTGATTGATCTGC
AGgacatttttgaatttcagaGTAAGTTGCATTGCAAAACAAACAACATT
GACGCCCTGAAAAAGGATATTAAATGATTAAACATTTATTGATACTTgct
ttttcctttaaaattctgatttctttcatttagggaaaatattcataaaa
taaACGACAATAActtttcaccaaaattaatGTTGGTACAATTTCTTACC
ACTGGCTCCAGTGATTCCATaaattatgtttaaaaaaatatgaaaattta
ggatcgaaaaaaaatttcacgtataaaattcaaaatgatctaattcttgt
ttttatttaggTGTTGAATGAGCAtactgatgatgatgatgattttggtT
TCAATACActcaaataaagaaaaatctggTAAGTCACCTCCATTCCATTT
TCTGGATTTCATCTATTGTATCTTTGTAACGATCCATTGATAATTTGATG
TTTACACGATAGTCCTTCGCCTCAAAAGTATTGAATACGATTGTATTCTT
TCTGCTGTTAGGACAATCAGTATTGCAGCATTGGTAGGAGAATTTGAAGG
AACCACCACCATGGTCACCTCCAATTTTTATGTGAAGCTCGTCTTTTATT
GTTGGTTCTCGACGAATAATGATGTACTGTATGGAAGAAAagggaaataa
aaaatataaattaaattgaaatagAATTAGCTAAAATCTTTATACTTTAG
TATTTGTAAAACAAGTGATATTTTTGTACAGCCAAGGTGTACATACCTTA
CAAGAGATTCAAGGTATGCAAACAAGTGTCCTTTCAGGTCATCAATGTAT
GCCTATGCTGCTTCCAATTGTTCATATTTGCCTTTTAAAATATTCCCAGT
CTNGGTGTACATACCTTACAAGAGATTCAAGGTATGCAAACAAGTGTCCT
TTCAGGTCATCAATGTATGCCCATGCAGCTTCCAATTGTTCATATTTGCC
TTTTAAAATATTCCCAGTCTTCTTGCATCTTTTTGGAAATTGGAAAGGGG
CTAGCTTGCAAATCACTACAGCAGCTACTATTGTGTGCATAATCTCTCTC
TGTTTGCGTTCCGATTCAAATGTTATTTTGCTTTCCCTCATCCACCTACA
gtataaaagcaaaaaagatagaaaagttaattgttaaattgagaaaatat
ttccagaatttttcaattcaacaaTTTGAAACCTTTATGCACCCATGGGG
TAATCTGCTCTATGTTCTAAACATGACTTTAAAAACAGGGATACTGAAAT
AATGTGTATATATGCTAAAGTAAACTGACAGATTTCTATCCTGGTTGTTT
AATGTTACTGATATATAATGCTAATAAACTGGGAAATTCTGTAACCTTGC
TAATTTCCTCAGTGTTGCCCATGGTATTTCTAAATCAGCCTTCATAGCAA
CAATTGTTTTTGCATCAAAAACTCTGTTACCAATGATCTCTTTTTGTTCA
AATAACGTTAACGAATTGACAAAATGTGCTGTCTGATTTGTGCTGTCTCC
ATTGCTGACAAGACTCAGTAAAGTTTTAATTGCTGCATTTCCAAACTGGA
TTGCACGACGACAAACATTCTTCTTGATTGCTACCGGGTTGATACAAGAA
CAAGAggcttaaaaagaaaacaataatcTATATTATACAACAATCCacat
tgaataaattttttgactttatCTTAATAAGCTTGAAATTTTGTCCTCAT
TTATGTCATGGCATGACAAAAATTTTGCAATCAATAGAACTTAAATTATC
AAACACATTCTCTTTTTTAGATTGCTTACCCTTGACCCATCAGTGTTGAA
TGATATTGACTTGTCACATGATTGGGATAGTTTGGTTTTAATTATGTGTA
CTGCAGCTTCTTCATAATCTCGTGGAACCTTATCACCGGTAGTTAACGAG
AATACATCCTTCAGTTTGATTTCAGTAGTTGATGTGGCTGGTTTTAATCT
GTTTATGATATCAATTGTTTGTTGAGAAAATATGACACCTGATGGGGAGA
CCAATGAAGTACATGATTGACATGGACATTTGCATTTTTCAAGTCCATGA
CCTTCAATGTGACTCAGTAGACACATCAAACATACTACGTGCTGACATGA
TGATACCAAAACTGGTTTATCAAAGAGTTTTTGACAAACTGGACACTTAA
CCAAATCTGTGAAGTCATCTTGAAGAAAGGAAGTCAAAGGAATATCGTTG
TTGTCTGTTTCTTTCAGAGAATCTGGAATCTGCTGGATCAAAGCAAGTAT
GTTGTTACGTGTCCATATCGTGGGAACTGGCGATTTTGATGGCCGTCCAC
CCTGCTTTTTGGTCTTCTTTGGGCGACCTGGACTATTTCGTGAAGTATCA
GCTCTTGAGCAAACCCAACAACCATCATCAGAGTGCAAGGGCCAATTTAT
GACTTGATGTTTTACCGTAGAACCCCGCTTTTTGATGGCATTCAGCTGGG
CACAGCACTTGAGGCATATATATTTTGGATGTTTACGATCCTCATCTTTT
CTAGTTTTAAGGTAGAAACATTCCAAAATATCTTCGGATTTGCTATCCAC
CAAAACTCCAtcattaagaatattttcccCACAAATTCTACACAgtcttt
gtaaattttcttgATGAGGATCCACCATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065856-exon-scaffold_447-1491911889:354048..354099 | TCONS_00065856-exon-scaffold_447-1491911889:354048..354099 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1510915933:354048..354099 | TCONS_00065856-exon-scaffold_447-1510915933:354048..354099 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1575043694:354048..354099 | TCONS_00065856-exon-scaffold_447-1575043694:354048..354099 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1491911889:354439..354771 | TCONS_00065856-exon-scaffold_447-1491911889:354439..354771 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1510915933:354439..354771 | TCONS_00065856-exon-scaffold_447-1510915933:354439..354771 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1575043694:354439..354771 | TCONS_00065856-exon-scaffold_447-1575043694:354439..354771 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1491911889:358468..359329 | TCONS_00065856-exon-scaffold_447-1491911889:358468..359329 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1510915933:358468..359329 | TCONS_00065856-exon-scaffold_447-1510915933:358468..359329 | Clytia hemisphaerica | exon |
| TCONS_00065856-exon-scaffold_447-1575043694:358468..359329 | TCONS_00065856-exon-scaffold_447-1575043694:358468..359329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_447 | supercontig | scaffold_447:354048..359329 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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