TCONS_00065853 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065853
Unique Name	TCONS_00065853
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1029

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_447:185722..189793+

transcript sequence

>TCONS_00065853 ID=TCONS_00065853|Name=TCONS_00065853|organism=Clytia hemisphaerica|type=transcript|length=1029bp
ACTGAACCTTAGAATATCACTTTTAGAgtattttaactgtaaattgccaa
CCATCCCCCACCCCAGTAAGGCTCgatactttcacaaaaatgccactGTT
CGCTTCAGGTATGTACTACATGTTAAAAGCTAGGTTGAATTTGGATTCTA
ACTTAAGAATACCTTAAGAATGTTCTAgaatgattttcgccaaaaagtta
agaccattcattcttataaaaaatcgtgtattttGAGGTGCTAACCGctc
acttttatttttagttaaTGATCATAAAAACATATCTACCGAGATAGCTG
GTGAAAAGTAAAGTAATACAATAATGGCAGAATCACTTAGAAATGGACAA
ACGTTTGATGATAACGAGGCACACGAGACTTCACCTGGCAAAGacgaaga
aaaaaagaagacgggaagagcaaaaaatttaaacagtggTCCTGTTCTGA
AGaaatgtaAGTCCTGTCAAAAAGGCTCCCCACCTGGATGCAAAATGTGT
AAGCACTGCTCCACGCCGTTTGACGAAAGGTCAAAAACAGTCAGAGACAT
GATGCCAAAATACAAGACAAATATAACGActcaaacaaagcaaacaagAG
CTGATatttacACCCTGCGACGAGATCACCATCAGGAGGTAGTTTGTCTA
ACTATCAAAGAGAATAACGGCAGATACAAGgtTGATGCTTTGACGACAAA
AGGTTGGGCCTCTTCCTTCTGGAGTCATCACGAAGAAAAAGGTGCTCCAG
CTTATTTATTGAAACGTTGCTTGGAGAAAGCCATCACTACAGATCCGCCA
TTAAAAGACAACGAGGTCGAATTTCTAGTTCAACTGGACGCTGGTGTTGA
AGATTCTCAAAATGAAGTTGAGAAAGAAAATACTGACCCAGTACAATCTA
AGACAAATTCTCAAACTATCGCTATGGCAAAAGTAAATGAGGTAAACTTA
CAACAGCATCAGCAATCAAAAACAGGTTGTCGTAACAACATCAATAAAAA
TGCTGCCCAAGAAATTTCAAACACAAGTA

Run BLAST on NCBI

transcript from alignment at scaffold_447:185722..189793+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065853 ID=TCONS_00065853|Name=TCONS_00065853|organism=Clytia hemisphaerica|type=transcript|length=4072bp|location=Sequence derived from alignment at scaffold_447:185722..189793+ (Clytia hemisphaerica)
ACTGAACCTTAGAATATCACTTTTAGAgtattttaactgtaaattgccaa
CCATCCCCCACCCCAGTAAGGCTCgatactttcacaaaaatgccactGTT
CGCTTCAGGTATGTACTACATGTTAAAAGCTAGGTTGAATTTGGATTCTA
ACTTAAGAATACCTTAAGAATGTTCTAgaatgattttcgccaaaaagtta
agaccattcattcttataaaaaatcgtgtattttGAGGTGCTAACCGctc
acttttatttttagttaaTGATCATAAAAACATATCTACCGAGATAGCTG
GTGAAAAGTAAAGTAATACAATAATGGCAGAATCACTTAGAAATGGACAA
ACGTTTGGTAACTATTTCTTAAACAGTTTATCAGCACTtgtaaaattaat
atttttgaattaaatttcgtgatttttatgATTATTTATGATATTTTAGA
ACACAACAGACAATAATGACGCACTTAATGTGATGCTTGATTTTACTCTG
ACAACAACGGATAGACTATAATGTGATAATCCTTTCACACTCAAACTCAT
GACATGACTTGACATGACATTGGTTGACTATGACTAAATTTACATACGAC
TGATTGAACAAACCAACGACGCCATGTGACTGACTGTATATCTTATCACA
TTGttgtaatttgaaattaaaatataGGTGAGTTCTATTAGATGAATCTT
ATATAAGTAGTTTTAATGTAAAAGAATATGACCAAAGCACCGAAGAATAA
AAACATAATACAGGAAAGGAGTAGAAATCAACTTTAAACTAATGGACTTG
ATtatctgaaatttttattctcAATTTTAGATGATAACGAGGCACACGAG
ACTTCACCTGGCAAAGacgaagaaaaaaagaagacgggaagagcaaaaaa
tttaaacagtggTCCTGTTCTGAAGGTAAACGAAGAGTAGGGAAGATTTA
GTGTACAGGAATCTTCAAGAAAAGTCACCATTATCCCTCACTACTAAGAT
GATAGTTCGGAATTTATTTTATGAGTACTTTTGATTACATTCATACATTT
cattaattatattttattttttagaaatgtaAGTCCTGTCAAAAAGGCTC
CCCACCTGGATGCAAAATGTGTAAGCACTGCTCCACGCCGTTTGACGAAA
GGTCAAAAACAGTCAGAGACATGATGCCAAAATACAAGACAAATATAACG
ActcaaacaaagcaaacaagAGCTGATGTAAGAATGACTTCTTTCATGTT
TTAACCTAAGTGTTTGTTAGGATATGtcgctaccttaattcaaaaggggc
ctaagtccaggtACTCCCCAGTTCAAAAGGGCCTTagtccatttttatga
aatttgaaatctttggtTTTTCTCGATGTCTGGCTCATTTGCAATCTTTT
GATGTACATAACAAGTAGTTTTTAAATATGAAAAGGATCATAACTTCATA
CTGAAGCTCTGATAAAAGTgatgtttaattcaaaagaggcctaagtccat
caactttttacaaagaagggcctaagtccatcataTTTTTACAATAAAGG
GCCTAAGTCGTCCATCAAAATAAGTTTGTTAAGTTTAAAAGAGGCCTAAG
TCAAATTGAGTCCATGTATCCTAAAAAGTTTAATTGAGTTTTTCTTTAAC
TAACTGAGATTgttttttctctttatcttgAATCTAGGTGTAAGTGGCTT
TAATTTGGATTGTCATAATTAATTGCAggttttgaacttttaaagGCAGA
AATTAACCCTCACACATGTTTCTAATTcatgtttaattcaaaaaaagGCC
AAGTCAATTCTGCAAGATTTACTAAGTTGCACCTGGTACGTACAAAAATA
TCTATTTTCCAAAAGAATacctttttattgaaaaaacaaGTTCAAGCTAt
ggctttcagaaaacatttacttcaaagctttaccatcaaaaatggtttca
gaataaaggaaaaactttaattgctattttctcaaaatgaccaaaatgga
cttaggccccttttgaatttaGGCTCACAGGagttaggccccttttgaat
taaggtagcgatGTGTACACTCCGTTCGACGAGTTTTTTCTAGTTTTATA
CGAATTCCTGATTGCAACACACTCGTAACAGCTAGCTGTGCAGTGGTTCT
TCCTATAAAGCTTAAGGATatagaaatttgtaaaatcaatATTTCTCATC
TCattgttttaataaaaaagcaaactcaaaaacaaagacatttttaatTG
GTCTTGGGAATACTTGCAAAATATGTTTTTGTTGGCATTAAGTAACAAAA
CCTTTTTTAGTAAGTAAAGTATTAAGGttcttgaaattctttttgtttac
ttttattttcagatttacACCCTGCGACGAGATCACCATCAGGAGGTAGT
TTGTCTAACTATCAAAGAGAATAACGGCAGATACAAGGTGCGCTAaagta
ttttctttaatttttagttCATTAAACAACAATTTCTCACTGCAAAACCT
TTTTAGGGTTGGGTTTTTgggcttttttatttttcctggTGCTCAAAAAT
CTTACTGACTGAGCCAGccttctttgtttatttttgtttaggtTGATGCT
TTGACGACAAAAGGTTGGGCCTCTTCCTTCTGGAGTCATCACGAAGAAAA
AGGTGCTCCAGCTTATTTATTGAAACGTTGCTTGGAGAAAGCCATCACTA
CAGGTATTTATCATTTTAAGATTTACTCTCAGTTTTTATGATATTTACAA
CAATTCTTTTCGTATAATTAATCTTGTTTGTGGTATAAGAATCTTTTTCA
GTATTTGATCATTTtcgtcttcaaaaattttaattgaaggtTGGTAACAC
CATTCATAGTTcgggatgacaccttccaaaaaagtgaagaaggggggcga
gatcagaaattttcattaaaaaggggtGATAGCAAGGAGGGGTCCTTTAA
GAAGGGGGgccgtttaagaaggggggcttacatatattgtagattatttt
ccagcactatTATGAAATGTGGTCTGCataattggaaaatttttctgttt
gagtAGTTTGAGTCGTTTGAGTCAACAATAAGCAAGAAAgaagtttgtta
ttttttctcttttttctctttttctatcTGAAGATATTTTCACATAATAT
TTGCTTAGCCCAAAACCCTTGaaggataggcatttttaaaagttgggggg
atgccaagaagggggatcagacccctttccgcaccaTGCCATTTCAAAGC
ACGTTTTTCTTAATTCTGTTTTTTATTTAGATCCGCCATTAAAAGACAAC
GAGGTCGAATTTCTAGTTCAACTGGACGCTGGTGTTGAAGGTTTTTAACA
TTCTTTTGTGACATTTACTCTGTAGACCAACTTTTTATGCTTGAAAAATT
GAGCAGTTTTAGGACTGAAAACTAGTAATTTATAGGTCATATAATTTgtg
gtagaattttttttaaattaacaaAATGTCTTTTTATAATTTAGATTCTC
AAAATGAAGTTGAGAAAGAAAATACTGACCCAGTACAATCTAAGACAAGT
AAGTTTTTCAATTCATTATAAAACTCGTAATTACAGTAATTCCACAATAG
TAAACGACCCACCCTTTCTCAAATCCCAATGGAGTATGAAACCCATGGCA
CACAATATCTTAATAAATCGTTTTACCTCATTTAAGATTCTCAAACTATC
GCTATGGCAAAAGTAAATGAGGTAAACTTACAACAGCATCAGCAATCAAA
AACAGGTAAATGATATTTTTACTACATGGTATGTTTTTATAATGTTTGAA
CTACCACGAACTTTCGACCCATTTAATAATAACTTCATCAAATGtgcttt
ttgttttaatttatttcaggATCTCGCAGTGGGcctgttttcattttttt
ttgcaagtTTTATAGACCCAAGGACTTAATGCATTTTAATATTTTGCACA
AACTTTCAAACGGGTATCTCTCCATATTTTAAAGGCAAactaatttttca
ttgaaatgttTTATTCAGGTTGTCGTAACAACATCAATAAAAATGCTGCC
CAAGAAATTTCAAACACAAGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041253	XLOC_041253	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_447	supercontig	scaffold_447:185722..189793 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312726	6.97299e-09	0	0	2.56342	1.04663	4.65629	4.78941	3.17777	2.71002	3.27677	2.41175	1.02079	0.923378	4.53522	3.74987	5.10149	2.61279	5.58497	1.6517	1.45751	1.44335	1.17863	1.74262	0	0	1.0225	1.28072	0	0.523525

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00065853 vs. Swiss-Prot (Human)

BLAST of TCONS_00065853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00065853 (transcript) - C. hemisphaerica