TCONS_00065825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065825
Unique NameTCONS_00065825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065825 ID=TCONS_00065825|Name=TCONS_00065825|organism=Clytia hemisphaerica|type=transcript|length=916bp
GATGTTGATGAAAGTGAATGGGACTCAACTTTGGTTGAAGCAATGAACAT
GCGAAGATGTCCAGTGTGTAAAAACGTCTTTTCCAACAAGTGGTTTCGAA
AACATGTTGATTCGTGTGAGCGGTCAGTGGAATCTTCTGGATCGGATACA
AATGTTGAAGGATCATCCAATGAACCAACATTCAATGAACACCATTCAAA
TGATGTACCGTCGGAAGGGGTATCCAATGTAATTGAGCCTCCTTCAATAA
ACGAAGAGCCACCAAATGTTGAAGAAGTGAACTACTCAGATCCATCCAAC
CCATCTGATCCCTTAAATGTTCCTGAAGAAATGAACCTCGAAGATCTTGA
TGAAGAAATATTAGAGATGATTTCTCAACGTTACTTTGAAAACGCTAATT
CTGATGAACAAGAGTCTGATAATGATAATGAAATCATGGAGTTTGATCAT
GAACCTGCTGACCGCAACCNTCTTGATGAAGAAATATTAGAGATGATTTC
TCAACGTTACTTTGAAAACGCTAATTCTGATGAACAAGAGTCTGATAATG
ATAATGAAATCATGGAGTTTGATCATGAACCTGCTAACCGCAACGTTGCT
AGTATTGGCCCTTGGATTTGTTTATTCTTGGCATTGTggcaatttcattt
taatataACGGACAGTGCTTTTGAATGTTTGCTGAAGTTCATCCATGGCT
TATTGTCAATTTTAGTTGAACACTTTAATCTTGACCCTGCTATTTTAATT
GCCGTTCCAAGCAGTCTGTATCTTTACCACAAATACATCAAAACTAGTGA
ACGCTTTAAAAAGTATGTTGTTTGTATAAAATGCCATACTCTATACGAGA
TGGAACAGTCTTTCATTCAAATTCAGGGACAACAAGTGTCTAAACGATGT
TCCTACATAGAGTTCC
Run BLAST on NCBI

protein sequence of TCONS_00065825-protein

>TCONS_00065825-protein ID=TCONS_00065825-protein|Name=TCONS_00065825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
DVDESEWDSTLVEAMNMRRCPVCKNVFSNKWFRKHVDSCERSVESSGSDT
NVEGSSNEPTFNEHHSNDVPSEGVSNVIEPPSINEEPPNVEEVNYSDPSN
PSDPLNVPEEMNLEDLDEEILEMISQRYFENANSDEQESDNDNEIMEFDH
EPADRNXLDEEILEMISQRYFENANSDEQESDNDNEIMEFDHEPANRNVA
SIGPWICLFLALWQFHFNITDSAFECLLKFIHGLLSILVEHFNLDPAILI
AVPSSLYLYHKYIKTSERFKKYVVCIKCHTLYEMEQSFIQIQGQQVSKRC
SYIEF
Run BLAST on NCBI

transcript from alignment at scaffold_446:9314..14628-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065825 ID=TCONS_00065825|Name=TCONS_00065825|organism=Clytia hemisphaerica|type=transcript|length=5315bp|location=Sequence derived from alignment at scaffold_446:9314..14628- (Clytia hemisphaerica)
GATGTTGATGAAAGTGAATGGGACTCAACTTTGGTTGAAGCAATGAAGTA
AGTATTATATTTTACAATCACCATTTACATACATATACCACTGGCATTGC
ACTGCTGCACCTGTATACATCACACCTATATAACCACGTGTAACTAATGA
AAACGAAAAATAGATTACCGAAATCATAGAATTTAACAAATTCATCAAAT
TAATTGAGAAAAAGATTGGAAATTTCGATAAGTTTGATAAGCATTCAAAA
GCTTTGTTTTGATAATCGAAGACTAATCGAAACGATTACTCTCTGGTTAG
TTTTGATGAATTCGGTTAAAAAACGAATTTGGTTACCTTCGATTGGTTAC
GCCTGGATATAATCTTACACAATTTTACTTGACTTCTTGAGAGATACAAG
CATCATTGCATCATTCAAGACATCCATGGCATTCAGAAAGGTCCACCGTG
AGATCGGTTCAGGTAATTGGGTCAGTGGAAGCCCAGTTTTCAGATCATGC
AGCCATGGCTGCTCCCAAAGAGAAATTAGTCCAATTGAATATATTTTCGC
TTCAACACAGCAGGATAACCCCTTGCCTTACAAAAAAAAAAAGATTTCTC
TAATACAATGAACCTAGAAGAAACTGAAAAATTATTACAGAACTAAAGAA
AAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTGAGGTTTGCTCAATACTCCTATTCATTTTGTATATCA
ATAAAAATTCTAATAATTTTAATAAAATTTGTATATATAGTCATCTGGGG
TAATTACGGGACAGTTAAAATTAAGGAGTAAATATGGGACACCCCTAAAA
ATGGTGCTATTATTATAAATTTGGATTCAGATGGAGTGGATTTTGGAGAT
AGTCATTCTAGCTGCTAGAAAAATGTCTGGTTAGATTATTCTAACATATA
CTTTGATGATTCGACAAAAGTTTCACATGTCACCATAAATATAGATTTTC
GAAGTTTTATAAGGAACTTTTCAAGCTTTAGTGTCAGGAAGAACTGCAAT
CACTTTGATTATATTTTGACTGAATTCTGACATCAAGATACTATGGTTTG
AAATCATAATAGTCACATTATCAAACAAGGCACCTTATCTCTAAAAAGTG
TGTCCCATATTCACCCCGTAGTCAAATCTTAATCTTTGGGTTATTATGGG
ACACTAAAGTTTGAGTTTGAAGTGTTTATTTTTACTTACTTTAATGAAAT
CATAACTACACTCTAAGTCTTTCAAAACCTGCAAAGGTTTGCATCTAAAT
ATACTTCAGTTGGTCTAGATTGCTCTATAGAAATATTATTGATTGAAGTG
TCCCGTTATTACCCCCAAATTGGAAAAAGGCTGGGGTAAAAATGGGACAC
TGTCACTAATTTTGTTGAAAGTCCTTTAGATGATAACACTTGGATTTGAA
GTCATCAAGTGGATGCAAAACCTTAAATATCATAGCCTTTTGGAAAGATA
TCTGGATTTTTCAATAACATTTTATACCTGTCCCATAATTACCCCGAGGG
TGTCCCGTAATTACCCAAAAATGCGGAGTATTTATGGGACACTTTTAGAA
TAATTTTTAGGAGCATCTACTAAATTTCAAGGAAAAGTAATAAATCTTGT
GTAAAGGTCATAAAAAATCGGATCTCTAGGATTAATACTTTTAGTACACT
CAAATATGTCAAAATCGTCCCGTAATTACCCCAGATCACTATATAATGAC
AATAACATTTAAATTTTAAATTTTAGATTTTATATGTGGCGAGTATTATA
TAGGCTCGCACCTTATGTGTGATAGATATATGGATAGATAGACAGTCTCA
TTATCTTGCTCTTTCCAATTTTATTTGACTGACATCCTTACTCGATGTAA
GAAACCTGCAACTGATTCAATTTTTCATACTTAACTTTTATTTATTTTGA
CCCTCTAATTTGAAAAGACCCTAGATTTGAAAATTTTCAATTCGAACCCA
CTCAAACCTCCAAGACCTTTACTTTCTATAGTTGAGAACATATCTTTCAG
CAAAATGACCAAAAATACAAAAGTTCTTTGGCTTTTACATATCAAACGAA
GGTTTCAAATTAGAAAAGTGCTTTCTTCTTTTGCTCACTCTAGCAGATTG
AAAGCATTTAAGATGGTTCTATTTATCAATATTTCATGTTGGCCAAACGA
GTTTATATGAAAATGCACCTGAGAGTTAGCTGTGACAAATTTAGATCCAG
AATAAGTGTCAAAACTAAAAACAAAAGAGAGTTATTTCATTCTTTTAAAA
TGTTTTAAAAGCAATTTTTAACTAAATTGTATATATTTTTTATATCTTTA
AGCACTTTTCTTTTGGAGTGTCTGTTTCTCACCCATTTTTTGATGGCTTT
AGGCCTTTCATGTTCTTGCTAAATTGAATCATGTCATGATTTCTTTGAGG
AATTTTGAATGAAAATCACAAAATACTGAAAATCTTACAGAACGGGTAAT
CAAGCCATTTTTTATTGGTTTGCCAAGCACATTGACACTAGTAGCCTCAA
AAGGGGTTTTTAAATATTATCATAAGTCTGCTTGAGTTTTTTATTCATTC
AGACATGACATTGCGAATAGCAAAAGGTCTGTACTAAACCTTTCTTCCTT
TTTTCAGCATTTTTACACATGATAGTTATTTGCAAAAAAATTCATCTCTC
AGAAATTTCGACATTTTCCTTGGTTTATTGTAAAACTTTCTCCATTTTGT
AAAGTAAAGGTGTAAGGTGAAGCATGACGCTACAGATCAAATCTGTGTTT
TGACTGGACTCGCCAACCTTTATGATTATAAGGGTACAGTCTGTTTATTG
CGAAAACTCTTTAAACTCAAGATCCCCTGAGAGTGTTTAGTGTTTTCATC
TTACTTTAATATACGGCGTTTGTTTGTCATTTAATTTTTTGTTTGCAACT
TGCAAATCGAGGAGGTTCTGGGTCGCTTCGCAACTTAATTTGTGACATTG
ACGGCTTGTTTTTGTCACGCTCGCCTCTCGCATGTCTTTGCTATGCAAAC
AGAGTGGAGGGACGGAAGAGTTCTGAAACGCGCGCAACCCCTTTTAGTTT
TTATTGCTAGGGTATGAACATACAAGAAAATATTTCAAAATTGCTTCAAT
CAAGGTTTAAAAAGAAAAGTGCTTAATATTAAGCACTACTCAGCCTGTAG
CAGATTAAAAATCGGCAAAAATCGGTTCAACAATACCTTTTCAGGTTTAT
GTTATATGGTTTTAAGTTAGTTTCAGGGTAATCCTAATTGTGTTTCAGTA
ATTTTTATTATAAAAATTAGAGAAAAGTGCTTCGGTCAGCCAGAGAAAAG
TTCACCCCAACTTCACCCCAAGGCAATTTAAAGTCATTCATTAACATTGT
TGATCGGAGTGTGAGAACTGAAAAATTTTGGTAGCCAAAGGGAAATGGAG
AAATTTCGTCTTAGGGGGGCAGACCTTGAAGAACAGTATTTTAGTTGTTT
TTAGAGTTGTTTCTAATTTTAAAAATATGTTTCTTTTTTTACTTAGCATG
CGAAGATGTCCAGTGTGTAAAAACGTCTTTTCCAACAAGTGGTTTCGAAA
ACATGTTGATTCGTGTGAGCGGTCAGTGGAATCTTCTGGATCGGATACAA
ATGTTGAAGGATCATCCAATGAACCAACATTCAATGAACACCATTCAAAT
GATGTACCGTCGGAAGGGGTATCCAATGTAATTGAGCCTCCTTCAATAAA
CGAAGAGCCACCAAATGTTGAAGAAGTGAACTACTCAGATCCATCCAACC
CATCTGATCCCTTAAATGTTCCTGAAGAAATGAACCTCGAAGATCTTGAT
GAAGAAATATTAGAGATGATTTCTCAACGTTACTTTGAAAACGCTAATTC
TGATGAACAAGAGTCTGATAATGATAATGAAATCATGGAGTTTGATCATG
AACCTGCTGACCGCAACCNTCTTGATGAAGAAATATTAGAGATGATTTCT
CAACGTTACTTTGAAAACGCTAATTCTGATGAACAAGAGTCTGATAATGA
TAATGAAATCATGGAGTTTGATCATGAACCTGCTAACCGCAACGTTGCTA
GTATTGGCCCTTGGATTTGTTTATTCTTGGCATTGTGGCAATTTCATTTT
AATATAACGGACAGTGCTTTTGAATGTTTGCTGAAGTTCATCCATGGCTT
ATTGTCAATTTTAGTTGAACACTTTAATCTTGACCCTGCTATTTTAATTG
CCGTTCCAAGCAGTCTGTATCTTTACCACAAATACATCAAAACTAGTGAA
CGCTTTAAAAAGTATGTTGTTTGTATAAAATGCCATACTCTATACGAGAT
GGAACAGTCTTTCATTCAAATTCAGGGACAACAAGTGTCTAAACGATGTT
CCTACATAGAGTTCC

Coding sequence (CDS) from alignment at scaffold_446:9314..14628-

>TCONS_00065825 ID=TCONS_00065825|Name=TCONS_00065825|organism=Clytia hemisphaerica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_446:9314..14628- (Clytia hemisphaerica)
CATGCGAAGATGTCCAGTGTGTAAAAACGTCTTTTCCAACAAGTGGTTTC
GAAAACATGTTGATTCGTGTGAGCGGTCAGTGGAATCTTCTGGATCGGAT
ACAAATGTTGAAGGATCATCCAATGAACCAACATTCAATGAACACCATTC
AAATGATGTACCGTCGGAAGGGGTATCCAATGTAATTGAGCCTCCTTCAA
TAAACGAAGAGCCACCAAATGTTGAAGAAGTGAACTACTCAGATCCATCC
AACCCATCTGATCCCTTAAATGTTCCTGAAGAAATGAACCTCGAAGATCT
TGATGAAGAAATATTAGAGATGATTTCTCAACGTTACTTTGAAAACGCTA
ATTCTGATGAACAAGAGTCTGATAATGATAATGAAATCATGGAGTTTGAT
CATGAACCTGCTGACCGCAACCNTCTTGATGAAGAAATATTAGAGATGAT
TTCTCAACGTTACTTTGAAAACGCTAATTCTGATGAACAAGAGTCTGATA
ATGATAATGAAATCATGGAGTTTGATCATGAACCTGCTAACCGCAACGTT
GCTAGTATTGGCCCTTGGATTTGTTTATTCTTGGCATTGTGGCAATTTCA
TTTTAATATAACGGACAGTGCTTTTGAATGTTTGCTGAAGTTCATCCATG
GCTTATTGTCAATTTTAGTTGAACACTTTAATCTTGACCCTGCTATTTTA
ATTGCCGTTCCAAGCAGTCTGTATCTTTACCACAAATACATCAAAACTAG
TGAACGCTTTAAAAAGTATGTTGTTTGTATAAAATGCCATACTCTATACG
AGATGGAACAGTCTTTCATTCAAATTCAGGGACAACAAGTGTCTAAACGA
TGTTCCTACATAGAGTTCGATGTTGATGAAAGTGAATGGGACTCAACTTT
GGTTGAAGCAATGAACATGCGAAGATGTCCAGTGTGTAAAAACGTCTTTT
CCAACAAGTGGTTTCGAAAACATGTTGATTCGTGTGAGCGGTCAGTGGAA
TCTTCTGGATCGGATACAAATGTTGAAGGATCATCCAATGAACCAACATT
CAATGAACACCATTCAAATGATGTACCGTCGGAAGGGGTATCCAATGTAA
TTGAGCCTCCTTCAATAAACGAAGAGCCACCAAATGTTGAAGAAGTGAAC
TACTCAGATCCATCCAACCCATCTGATCCCTTAAATGTTCCTGAAGAAAT
GAACCTCGAAGATCTTGATGAAGAAATATTAGAGATGATTTCTCAACGTT
ACTTTGAAAACGCTAATTCTGATGAACAAGAGTCTGATAATGATAATGAA
ATCATGGAGTTTGATCATGAACCTGCTGACCGCAACCNTCTTGATGAAGA
AATATTAGAGATGATTTCTCAACGTTACTTTGAAAACGCTAATTCTGATG
AACAAGAGTCTGATAATGATAATGAAATCATGGAGTTTGATCATGAACCT
GCTAACCGCAACGTTGCTAGTATTGGCCCTTGGATTTGTTTATTCTTGGC
ATTGTGGCAATTTCATTTTAATATAACGGACAGTGCTTTTGAATGTTTGC
TGAAGTTCATCCATGGCTTATTGTCAATTTTAGTTGAACACTTTAATCTT
GACCCTGCTATTTTAATTGCCGTTCCAAGCAGTCTGTATCTTTACCACAA
ATACATCAAAACTAGTGAACGCTTTAAAAAGTATGTTGTTTGTATAAAAT
GCCATACTCTATACGAGATGGAACAGTCTTTCATTCAAATTCAGGGACAA
CAAGTGTCTAAACGATGTTCCTACATAGAGTTCGATGTTGATGAAAGTGA
ATGGGACTCAACTTTGGTTGAAGCAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041238XLOC_041238Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065825-proteinTCONS_00065825-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065825-exon-scaffold_446-1575043694:14582..14628TCONS_00065825-exon-scaffold_446-1575043694:14582..14628Clytia hemisphaericaexon
TCONS_00065825-exon-scaffold_446-1575043694:9314..10182TCONS_00065825-exon-scaffold_446-1575043694:9314..10182Clytia hemisphaericaexon
TCONS_00065825-exon-scaffold_446-1510915933:14582..14628TCONS_00065825-exon-scaffold_446-1510915933:14582..14628Clytia hemisphaericaexon
TCONS_00065825-exon-scaffold_446-1510915933:9314..10182TCONS_00065825-exon-scaffold_446-1510915933:9314..10182Clytia hemisphaericaexon
TCONS_00065825-exon-scaffold_446-1491911889:14582..14628TCONS_00065825-exon-scaffold_446-1491911889:14582..14628Clytia hemisphaericaexon
TCONS_00065825-exon-scaffold_446-1491911889:9314..10182TCONS_00065825-exon-scaffold_446-1491911889:9314..10182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:9314..14628 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0555867	0.0676715	0.10695	0.193546	0.120797	0	0.157135	0.152519	0.534721	0.36711	0.381247	0.427414	0.183472	0.565057	0.154444	0.213373	0.558198	0.630728	0.638959	0.0575362	0.156926	0.0538768	0.0480837	0.0688077	0.146867	0.0556966	0.0567461
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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