TCONS_00065824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065824
Unique NameTCONS_00065824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065824 ID=TCONS_00065824|Name=TCONS_00065824|organism=Clytia hemisphaerica|type=transcript|length=918bp
agaaaataatttgatttaaaaCTTAACACTTTTATAACTAAGAATTTAAT
TCAACCCAGCTGCCACACGACGTTGTTTAAAATATTCATCTAACATTATA
AGAGCCCGTAGGCGTTGCGTGTACGTTGCTCTGACGTAGAGTGCCAGGAT
AATTGCTgctatgagaaaaataaatattaccCTAGTTGAAAAGCCCATAA
CCACGGCAAGCCAAGCAAGAAATGCGCCATAACGGCTACTGTAACAGCTT
CAGTGATGCAGGGTCCAAAAGCCAATCTCAAAACAGTAAAACGAAGTCTT
TTCAATGCCGCTATATCTAATCCAAGGCCCGAGCGCAAAAGAATGACAGC
TAGTGCGACTTGACGTAATGAAGAGGACCAGTTAGAATCAATGTTCTTTG
CAATATTTATCGCTTCAAtgtttttcaatagaaaacCAACGATCAACATC
CCTAACAATGCTGGGAAATTAAAATATTGTGTCTTCCAAGCTACCAAGAA
TCCACCAAGAGAAGCCAGTACTAAAAGCAAATACAACGAGAATAAGTTTC
CGCCAACCCAAGCTGAACTTCCGACAACGCAATAAAGAGCCGCCCATATT
ACAATACAAGCAATTATTCGTGTGGCGTATTCACCAAAACGCCCTCGGGG
CGGGCAACAGTTTTTAACAAAGGCGGGTGTTCTATGAACCACATTTAAGT
GGTTCGGGCCACCAATACTTCGATGAGTGATCCGTTCATCGTACCCAGTG
TCTAATCCACTGTCGTTGTCGTCAGGTTCCTGGGGCTGGTTGTTAGGGAG
ATTGATCAATGCAACGGATTCAGGAATGTTACTGGAACGCACTGGTGAAG
CAGCTTCTGACATTCTAATGCACTTTTTTTCGTTAATATTTAATTCATTT
TTGTTGGTTCTTTTCTAT
Run BLAST on NCBI

transcript from alignment at scaffold_446:43627..44953+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065824 ID=TCONS_00065824|Name=TCONS_00065824|organism=Clytia hemisphaerica|type=transcript|length=1327bp|location=Sequence derived from alignment at scaffold_446:43627..44953+ (Clytia hemisphaerica)
agaaaataatttgatttaaaaCTTAACACTTTTATAACTAAGAATTTAAT
TCAACCCAGCTGCCACACGACGTTGTTTAAAATATTCATCTAACATTATA
AGAGCCCGTAGGCGTTGCGTGTACGTTGCTCTGACGTAGAGTGCCAGGAT
AATTGCTgctatgagaaaaataaatattaccCTAGTTGAAAAGCCCATAA
CCACGGCAAGCCAAGCAAGAAATGCGCCATAACGGCTACTGTAACAGCTT
CAGTGATGCAGGGTCCAAAAGCCAATCTCAAAACAGTAAAACGAAGTCTT
TTCAATGCCGCTATATCTAATCCAAGGCCCGAGCGCAAAAGAATGACAGC
TAGTGCGACTTGACGTAATGAAGAGGACCAGTTAGAATCAATGTTCTTTG
CAATATTTATCGCTTCAAtgtttttcaatagaaaacCAACGATCAACATC
CCTAACAATGCTGGGAAATTAAAATATTGTGTCTTCCAAGCTACCAAGAA
TCCACCAAGAGAAGCCAGTACTAAAAGCAAATACAACGAGAATAAGTTTC
CGCCAACCCAAGCTGAACTTCCGACAACGCAATAAAGAGCCGCCCATATT
ACAATACAAGCAATTATTCGTGTGGCGTATTCACCAAAACGCCCTCGGGG
CGGGCAACAGTTTTTAACAAAGGCGGGTGTTCTATGAACCACATTTAAGT
GGTTCGGGCCACCAATACTTCGATGAGTGATCCGTTCATCGTACCCAGTG
TCTAATCCACTGTCGTTGTCGTCAGGTTCCTGGGGCTGGTTGTTAGGGAG
ATTGATCAATGCAACGGATTCAGGAATGTTACTGGAACGCACTGGTGAAG
CAGCTTCTGACATTCTAATGcactttttttgtcaatatttaaTTCATTTT
TGTTGGTTCTTTTCTATGATTAAAATAGATCGGTTATTAAGAAGTAATTA
AAATGACATTACAAGAACTTGATACTTTTGGGAAATTTGACGATACTGAA
TTAAATTCTAAAGCACGAATATACTTGATCTCCATAAGGAGTTACTATTA
CATCGAGGACCCTGGTGGTGAAAGCTTTAACCTTGGATAAATCAACAATG
ATACATAataattccaaaaatatattctAAATCATTATCCAATAAACGCA
AAATATcagtatttttttcaagattaaGTTAATCATAAGCAATTTAAAAA
AACCTAGATAGGGAAAATTCTATCATAAGACAATATCTTCTCTCCCtcaa
accatagtataagaaNGGACATTCTAATGCACTTTTTTTCGTTAATATTT
AATTCATTTTTGTTGGTTCTTTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041237XLOC_041237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065824-exon-scaffold_446-1491911889:43627..44487TCONS_00065824-exon-scaffold_446-1491911889:43627..44487Clytia hemisphaericaexon
TCONS_00065824-exon-scaffold_446-1510915933:43627..44487TCONS_00065824-exon-scaffold_446-1510915933:43627..44487Clytia hemisphaericaexon
TCONS_00065824-exon-scaffold_446-1575043694:43627..44487TCONS_00065824-exon-scaffold_446-1575043694:43627..44487Clytia hemisphaericaexon
TCONS_00065824-exon-scaffold_446-1491911889:44897..44953TCONS_00065824-exon-scaffold_446-1491911889:44897..44953Clytia hemisphaericaexon
TCONS_00065824-exon-scaffold_446-1510915933:44897..44953TCONS_00065824-exon-scaffold_446-1510915933:44897..44953Clytia hemisphaericaexon
TCONS_00065824-exon-scaffold_446-1575043694:44897..44953TCONS_00065824-exon-scaffold_446-1575043694:44897..44953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:43627..44953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.1277	20.3748	8.72212	5.74575	2.7223	2.90988	2.22367	3.04323	6.76671	9.21656	11.719	9.7415	10.9143	11.9635	4.3072	5.03029	1.71552	6.84895	5.16816	3.05641	3.14979	1.68067	5.72099	4.50998	3.80348	2.39986	3.04799	2.09102	2.08584	3.54535
Blast
[Close]
BLAST of TCONS_00065824 vs. Swiss-Prot (Human)
Match: SL9B2 (Sodium/hydrogen exchanger 9B2 OS=Homo sapiens GN=SLC9B2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 4.216e-24
Identity = 80/216 (37.04%), Postives = 117/216 (54.17%), Query Frame = -2 
Query:  180 ESVALINLPNNQPQEPDDNDSGLDTGYDERITHRSIGGPNHLNVVHRTPAFVKNCCPPRGRFGEYATRIIACIVIWAALYCVVGSSAWVGGNXXXXXXXXXXXXX--XXXXXAWKTQYFNFPALLGMLIVGFLLXXXXXXXXXXXIDSNWSSSLRQVALAVILLRSGLGLDIAALKRLRFTVLRLAFGPCITEAVTVAVMAHFLLGLPWLWAFQLG 821
            +   ++ L      EP +    L +   E+    +    NH+  + +  A     CPP G      T +   +++WA ++ + GS    GGNLF + +L   A +      +         P+LLGML+ GFL++NI  IN    I   WSSSLR +AL++IL+R+GLGLD  ALK+L+   +RL+ GPCI EA T A++AH+LLGLPW W F LG
Sbjct:   30 QEETVMKLKGIDANEPTEGSILLKS--SEKKLQETPTEANHVQRLRQMLA-----CPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGGNLFGIIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQWGFILG 238
The following BLAST results are available for this feature:
BLAST of TCONS_00065824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SL9B24.216e-2437.04Sodium/hydrogen exchanger 9B2 OS=Homo sapiens GN=S... [more]
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