|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065823 ID=TCONS_00065823|Name=TCONS_00065823|organism=Clytia hemisphaerica|type=transcript|length=363bp
ATTCCATCCGCGTGTGCTCCGGACTGTGTTAACAACTTTTTCTTCTACAC
ACAACAACtgaaaacaaagtttttttcttgctttcattATGGAATCACCT
GACGAACTGCTGTTCATTCCTGCTAGTCCTAATCCAAATCCCTCAAAaag
atcaattttgtcatctgGTAAACAAAGGACGGGTAAAAAAGACTCAATTA
TATGTCCATGGGACACACAGCAAGATGGAATTGACCCACAGAATCAATAT
AGTGTCGAAACAGAATCTTTATCAGAGTCAGAACAGGCTGCTTTAGCTTC
ACAAGATGCAAAAGGAAGGAAGAAATCTTTCTCTACTAAGAAAAGTAAGA
GCTTTGATTTTCT Run BLAST on NCBI transcript from alignment at scaffold_446:17613..20545+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065823 ID=TCONS_00065823|Name=TCONS_00065823|organism=Clytia hemisphaerica|type=transcript|length=2933bp|location=Sequence derived from alignment at scaffold_446:17613..20545+ (Clytia hemisphaerica)
ATTCCATCCGCGTGTGCTCCGGACTGTGTTAACAACTTTTTCTTCTACAC
ACAACAACtgaaaacaaagtttttttcttgctttcattATGGAATCACCT
GACGAACTGCTGTTCATTCCTGCTAGTCCTAGTAAGTTAAGACTTACAAT
TCccttatattttcaatttgaattttaacTTGACGTTGTTGACTCAAACC
AAAGTAATAATTTTAATAATTAGCACCTATATAGTAATAATTTTCAGGCT
TCTGAAAGTACACTGAACTATTTGGCCTGTAgtaaattggcaaaattttt
gaaattttacatgaTGGCCATTTTTATTTAGCCAATTTTTCATGaacttt
tgttttttagttatcaacttgctttcttatCTTTGATAGATCCAAATCCC
TCAAAaagatcaattttgtcatctgGTAAACAAAGGACGGGTAAAAAAGG
TTATTATTGTTCTATTGCATTTTTTCTCATCCCGATCAAATAAGTTTTGC
TGAAATTAGTTCCTGCAAAAGTTATTTCCATCAGTAAGAAGTCTTATTGT
TTTAATACTCCTTTATGGATGTTGTGGCAGCCTATTGCATAGCAGCCTAT
ATTGAAGCTTATTGCAGTCTTTGGTACATAATAAGTGTCTCCACCTTATT
GATTTAATTAAAATCGTTCACCTTGACCTAGAACATTAATACAACCCCCT
ATCAGGGGGTGAGTGTACAAAACAGCAAAAATGTTAACTTCTAACACAAT
TTTGACTTTATTGCTTTTCATTTGCTTGTTCATTGTTGGTCTTTCATTTC
CATTTCTTTATCAAGATAGATATTACTGtaaactgctccaacttgggacg
agtgtacgcaacatgggacttgttgatatctggcctgtattttcacttaa
ctggttaaatctctttgacaacaaatttgttttgataactccaccaagtt
tatcaattatACCGTGAAATCGGGcagcttgcatcagtggaggcaaacac
gCATAGCCCtcgaatgaatgacctgtctggtcattaaaatacaaagttaa
atgaaaacaaaatggtagagtagagctgcgagcagagctgcgtagttcat
ttgttttgaaattttgctgctttgattggtcagtcatttgatggctgtgc
aagtttcccttaggctacgtcatattagcactgctcttgttttgaatatt
gaaattcttcgGATAAATCGCAAGCGCACTgagtttttaatgaaacaata
gggagtttcgaaacctaagccaatcagctgttttaaacattcttttattt
gaaatctctattgataaacatcttttgtgaaaagTTGTCTATTCTGTTTA
AACCTTTtcataagcaattcccggtgggggtcactagtggccgcctatag
cagtgcctatagaccaagagtaaggcctaaaagcctggagctgtctattg
tgtagactagtttccctccactgatgcaatttacatgtcatgataacttt
cactgataacgCGCCCTCTTTaacttattttcatttaaaatgaccggacg
ccgaatggagaattagagaaaaTGATGTCAAACGCCCACAATCGCGTGtt
ttccactacggatttttttcatatttcgatttaaaagcctactcggtgcg
aaagagaaattgtgtatttgtgaacttaaaatcaaatgactttggaggtt
tggtggaATGGCTGTCCCATGTTgtgtaagatagtcccaagttggagcag
ttgacggtattttgTATGCAATCTGCCCACAATTTTTTAAGAAGttctaa
aaatattgaaaaataactCAGACTTGATCAACTGTTCAAGGTTTCAAAGA
CCAGGGGGGTACCGACACACGGTACTGACCTATAGCtaggtggtggtgtc
tttttttacATTTCAGAAAAGTTAGTACCCTGTACGTNCGACACATGGTA
CTGACCTATAGCtaggtggtggtgtctttttttacatttcagaaaagtta
gtacccggtacagTACCACTTTTTTAAACCcctttgagaatttttttgat
ttttttgaagacaaaacttcTAAAATAGTTAAGAAGTGTGTGATGAAAAT
ACTGTTGGGTGGTactaaaaaattgagtaaaaaatcaagttaaaggaccc
tatgggttagtactcTGCCTTGGTACCCCCTGCAAAGACCTGCAGCAATG
GAGTTTGCTCTAAAAATGAGACTGCCTTTATTATTTCTAGACTCAATTAT
ATGTCCATGGGACACACAGCAAGATGGAATTGGTGAGACATTATGTTTAT
CTTTTATCAGACATTTAACTCTTCCAGACTTtaactttaaattttaattt
ttattgctattattttcataattatcaTTGATTAATTGTTTATATTAATA
GATTTGTCAACACAGATCAGGTTCTAATATACAAAACTATATACAATGCC
ATATAAATTGGCAGTAAAAACTGATGTGGATATAcaggctgaaaaaaaaa
caaaaatgaaaaaaagacaaTGCGTAAGAAAGCTCAGAGTAGGCTTGATA
TTTTTACAATCTGTTGAAACAGATCTTTTCTTCAGAAAGCTTTACAACCA
CCTTTGAGATGTGTGTAAACTTCAGCCCCTCTTTCAAAAAGAATCATCCT
ATAACAATTCCCAGGATGCCACCTCAAACTTGAACAATTCTGAATAATTA
CTCAAATTCATTCCATGAGGCAGGATACAAGAAAGACATGGTCGTTTTCA
AACTAGTTGACTCTGCAATGAAGTATTACATCTTATTTGCATTTCTTTAC
CAGACCCACAGAATCAATATAGTGTCGAAACAGAATCTTTATCAGAGTCA
GAACAGGCTGCTTTAGCTTCACAAGATGCAAAAGGAAGGAAGAAATCTTT
CTCTACTAAGAAAAGTAAGAGCTTTGATTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065823-exon-scaffold_446-1491911889:17613..17743 | TCONS_00065823-exon-scaffold_446-1491911889:17613..17743 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1510915933:17613..17743 | TCONS_00065823-exon-scaffold_446-1510915933:17613..17743 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1575043694:17613..17743 | TCONS_00065823-exon-scaffold_446-1575043694:17613..17743 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1491911889:18002..18061 | TCONS_00065823-exon-scaffold_446-1491911889:18002..18061 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1510915933:18002..18061 | TCONS_00065823-exon-scaffold_446-1510915933:18002..18061 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1575043694:18002..18061 | TCONS_00065823-exon-scaffold_446-1575043694:18002..18061 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1491911889:19853..19894 | TCONS_00065823-exon-scaffold_446-1491911889:19853..19894 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1510915933:19853..19894 | TCONS_00065823-exon-scaffold_446-1510915933:19853..19894 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1575043694:19853..19894 | TCONS_00065823-exon-scaffold_446-1575043694:19853..19894 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1491911889:20416..20545 | TCONS_00065823-exon-scaffold_446-1491911889:20416..20545 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1510915933:20416..20545 | TCONS_00065823-exon-scaffold_446-1510915933:20416..20545 | Clytia hemisphaerica | exon |
| TCONS_00065823-exon-scaffold_446-1575043694:20416..20545 | TCONS_00065823-exon-scaffold_446-1575043694:20416..20545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_446 | supercontig | scaffold_446:17613..20545 + |
Blast
The following BLAST results are available for this feature:
|
