|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065794 ID=TCONS_00065794|Name=TCONS_00065794|organism=Clytia hemisphaerica|type=transcript|length=2321bpRun BLAST on NCBI protein sequence of TCONS_00065794-protein >TCONS_00065794-protein ID=TCONS_00065794-protein|Name=TCONS_00065794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=748bp MISIKDQILNIRQKEQQDTEPDREPLLNTENYNKMVKMNSQTACSTDVGSRun BLAST on NCBI transcript from alignment at scaffold_445:74320..143529+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065794 ID=TCONS_00065794|Name=TCONS_00065794|organism=Clytia hemisphaerica|type=transcript|length=69210bp|location=Sequence derived from alignment at scaffold_445:74320..143529+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_445:74320..143529+ >TCONS_00065794 ID=TCONS_00065794|Name=TCONS_00065794|organism=Clytia hemisphaerica|type=CDS|length=47124bp|location=Sequence derived from alignment at scaffold_445:74320..143529+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065794 vs. Swiss-Prot (Human)
Match: AT2C1 (Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3) HSP 1 Score: 788.489 bits (2035), Expect = 0.000e+0 Identity = 403/722 (55.82%), Postives = 528/722 (73.13%), Query Frame = 3
Query: 159 NTENYNKMVKMNSQTACSTDVGSMEDLMQTSLKEGLSSKEVTHRQKLYGGNDFDVGEETPIWKKYLMMFKEPMIILLLVSGFVSICMGQYDDXXXXXXXXXXXXXXXFIQEYRSDQSVAAITKLVPPTCFCLRDGEWVDFLAENLVPGDIISIETGDRVPADVRLFEAIHLQIDESSFTGEIKPAKKQTGVLSASAS--LSERNNIALMGTLVCSGKGKGIVFGTGVDSEFGSVFQMMKEEEPPKTPLQKSMDQLGAQLSTYSILIIGFVVFLGWVQKRRIVEMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRMARKNAIVKRLPVVETLGCATVICSDKTGTLTKNEMTVTDLVLPDNRKAMVTGIGYSGHGEVMIDGVAASEFTDLSLTQLVKTGCLCNNASIRNGSLHGQATEGAIIAVGLKVGLIRLGDEYTRVDEIPFSSETKWMAVKTKKTWAYNNEAEEVYHVKGAVERVLDKCRTSYHDGSSVIMTNNKRKEIFDAAHQLASRGLRVIAFAYGKDLSNLTYLGLAGIIDPPRRGVPESIQVLQDSGVQVKMITGDAKDTAVAVAQAIGLKVTEQRNVISGEQLESMDCYELRRVIEQISIFYRVSPKNKVTIVKALQELGHVVGMTGDGVNDAVALKCADIGIAMGKCGTDVAKEAADMILADDDFGTIMSALAEGKGIYYNIRNFVRFQLSTSIAAISLIMISTLMKLPNPL 2318
N EN + + S+ A V + ++Q L+ GL+ EV+HR+ +G N+FD+ E+ P+WKKY+ FK P+I+LLL S +S+ M Q+DDAVSITVA++IVVTVAF+QEYRS++S+ ++KLVPP C C+R+G+ LA +LVPGD + + GDRVPAD+RLFEA+ L IDESS TGE P K T A+ + L+ R+NIA MGTLV GK KG+V GTG +SEFG VF+MM+ EE PKTPLQKSMD LG QLS YS IIG ++ +GW+ + I+EMFTI VSLAVAAIPEGLPIVVTVTLALGVMRM +K AIVK+LP+VETLGC VICSDKTGTLTKNEMTVT + D A VTG+GY+ GEV++DG F + +++++V+ GC+CN+A IRN +L G+ TEGA+IA+ +K+GL L +Y R E PFSSE KWMAVK + E+ +KGA E+V+ C T G ++ +T +R ++ S GLRV+A A G +L LT+LGL GIIDPPR GV E++ L SGV +KMITGD+++TAVA+A +GL ++V SGE++++MD +L +++ ++++FYR SP++K+ I+K+LQ+ G VV MTGDGVNDAVALK ADIG+AMG+ GTDV KEAADMIL DDDF TIMSA+ EGKGIY NI+NFVRFQLSTSIAA++LI ++TLM PNPL
Sbjct: 11 NGENETMIPVLTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSIDESSLTGETTPCSKVTAPQPAATNGDLASRSNIAFMGTLVRCGKAKGVVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSFGIIGIIMLVGWLLGKDILEMFTISVSLAVAAIPEGLPIVVTVTLALGVMRMVKKRAIVKKLPIVETLGCCNVICSDKTGTLTKNEMTVTHIFTSDGLHAEVTGVGYNQFGEVIVDGDVVHGFYNPAVSRIVEAGCVCNDAVIRNNTLMGKPTEGALIALAMKMGLDGLQQDYIRKAEYPFSSEQKWMAVKC--VHRTQQDRPEICFMKGAYEQVIKYCTTYQSKGQTLTLTQQQRDVYQQEKARMGSAGLRVLALASGPELGQLTFLGLVGIIDPPRTGVKEAVTTLIASGVSIKMITGDSQETAVAIASRLGLYSKTSQSV-SGEEIDAMDVQQLSQIVPKVAVFYRASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPL 729 The following BLAST results are available for this feature:
BLAST of TCONS_00065794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.