TCONS_00065755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065755
Unique NameTCONS_00065755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065755 ID=TCONS_00065755|Name=TCONS_00065755|organism=Clytia hemisphaerica|type=transcript|length=1713bp
ACTTATTTTTGTCGAattattagattttttcatttattcaaaaaatatat
aaataatttCCACATTCtatgaaattttccattttatcatttttacagCT
CTATACATATCTGCTCtctctcaaaatattttaaaaggataaaaaataac
taaaatagATAAATTCTATattatagaaaaaataagattgaaggtataaa
aataaaaaagaggaATAAGATTTTATCCTTGAGGTTCACTCTTCTCGCGT
CTCTCCTAAGGTATTATTTACACTGTAATTTTTTATAGAATATCATCATA
CTATATGCATATATTTACACtagaaagaaatttatttgtCCTAATTTTTA
GTCCAAACTAAAATTCAAGAACCAAAATTGAATTTATGTGAAAggtttag
aaaaaattaaaccgTAAACAAAAATAGTTTTAGTCACGTAACTTTGAtta
tcataaattttgaattttcgtaTAAATAGAACTGATTAATTCGTTATCAA
TAGTCTATTCAGTTGTCGGATGTTTCATCGAAGCTTTATCAGTctttctg
acgtcaattttgtaTGGATCTGCACGTCGTTAGAACGTGTGTGGTTTAAC
CCTCAAAGGAAAATTGGTTAGGGATTTTCACCATCCACCATCTTGAATAT
GGGTTTTCGGTGTGAGAATAATGTGTGAGGCAATACTcgtaaataaaaaa
tgaatcacatttttctttccttcttgCTGTGATGTTGCGACAGGATTGCA
CTTACACCGTCTCACGTTGTCCCATTCATGAGTATtattgaatattttaa
gaaagatTACACCACGCTGTCAAGCTACCATTATGGAATCTTACATTGAC
TACAAGATGAGCTGTCAATACGTTTGTCATGAACACAAGGTTTCGAATGA
CATTTTGTTTTCGTGTAACTTTTCTCATGTGATTTTCACAACAAAATATC
TCCATCATTTCTTTCATAGAAACTCTATTCTCCATCAAACCAAACAACAT
TTCGCACTCttgaatttcttatttttcttcttaGAATTTTTAGCCATTGC
CGAACGAGCAGCCGTTTCAAATAAATCCATTACTCCTGCTTTTGTTAGCG
CCGAGCATTCAACAAAAGAGACCGCATCGATCGCCCGCGCGGCTTGAATA
CCATCTTCAATTTGAACGGGAACTTGTTTATGTCCTTGTAACTTTAACTT
AACATCTTCGTTATTTCTCAAGTCTTTCTTATTTCCGCATAAAATAATTG
GTACTCCCGGACAGAAATGTTTAACTTCCGGAGCCCATTTTTCGACGACG
TTCATGAAACTGTCCGGACTGTCAATGCTGTAACAGATAACGATAACGTC
GGCATCTGGGTACATGAGTATACGGAGTTGGTCATATTCTTCTTGTCCCG
CAGTGTCGAATAATGCAAGTTCAACCTATAAAGATAAAGAGAATAATTGG
AATCAGAtatatagaattttttttcatacaaaaatgtATTTGggtctttt
ttttgaaatttctcataATTTTAGATTGAGTAATTTTTCCAGAGATATTT
GAAATTTGTAACAAACAGATCAATTAAAATACTTCAAAACGCCACAAAAA
TAAAACCGCAAAAaaacttactcttaggttccaaataaacgggccccccc
gcttgttaatttttcgaaaattttccaacccccccggaccttattaggac
ccccccgtttatt
Run BLAST on NCBI

transcript from alignment at scaffold_444:28433..31245-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065755 ID=TCONS_00065755|Name=TCONS_00065755|organism=Clytia hemisphaerica|type=transcript|length=2813bp|location=Sequence derived from alignment at scaffold_444:28433..31245- (Clytia hemisphaerica)
ACTTATTTTTGTCGAATTATTAGATTTTTTCATTTATTCAAAAAATATAT
AAATAATTTCCACATTCTATGAAATTTTCCATTTTATCATTTTTACAGCT
CTATACATATCTGCTCTCTCTCAAAATATTTTAAAAGGATAAAAAATAAC
TAAAATAGATAAATTCTATATTATAGAAAAAATAAGATTGAAGGTATAAA
AATAAAAAAGAGGAATAAGATTTTATCCTTGAGGTTCACTCTTCTCGCGT
CTCTCCTAAGGTATTATTTACACTGTAATTTTTTATAGAATATCATCATA
CTATATGCATATATTTACACTAGAAAGAAATTTATTTGTCCTAATTTTTA
GTCCAAACTAAAATTCAAGAACCAAAATTGAATTTATGTGAAAGGTTTAG
AAAAAATTAAACCGTAAACAAAAATAGTTTTAGTCACGTAACTTTGATTA
TCATAAATTTTGAATTTTCGTATAAATAGAACTGATTAATTCGTTATCAA
TAGTCTATTCAGTTGTCGGATGTTTCATCGAAGCTTTATCAGTCTTTCTG
ACGTCAATTTTGTATGGATCTGCACGTCGTTAGAACGTGTGTGGTTTAAC
CCTCAAAGGAAAATTGGTTAGGGATTTTCACCATCCACCATCTTGAATAT
GGGTTTTCGGTGTGAGAATAATGTGTGAGGCAATACTCGTAAATAAAAAA
TGAATCACATTTTTCTTTCCTTCTTGCTGTGATGTTGCGACAGGATTGCA
CTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTAACTTTGATT
ATCATAAATTTTGAATTTTCGTATAAATAGAACTGATTAATTCGTTATCA
ATAGTCTATTCAGTTGTCGGATGTTTCATCGAAGCTTTATCAGTCTTTCT
GACGTCAATTTTGTATGGATCTGCACGTCGTTAGAACGTGTGTGGTTTAA
CCCTCAAAGGAAAATTGGTTAGGGATTTTCACCATCCACCATCTTGAATA
TGGGTTTTCGGTGTGAGAATAATGTGTGAGGCAATACTCGTAAATAAAAA
ATGAATCACATTTTTCTTTCCTTCTTGCTGTGATGTTGCGACAGGATTGC
ACTACACCGTCTCACGTTGTCCCATTCATGAGTATTATTGAATATTTTAA
GAAAGATTACACCACGCTGTCAAGCTACCATTATGGAATCTTACATTGAC
TACAAGATGAGCTGTCAATACGTTTGTCATGAACACAAGGTTTCGAATGA
CATTTTGTTTTCGTGTAACTTTTCTCATGTGATTTTCACAACAAAATATC
TCCATCATTTCTTTCATAGAAACTCTATTCTCCATCAAACCAAACAACAT
TTCGCACTCTTGAATTTCTTATTTTTCTTCTTAGAATTTTTAGCCATTGC
CGAACGAGCAGCCGTTTCAAATAAATCCATTACTCCTGCTTTTGTTAGCG
CCGAGCATTCAACAAAAGAGACCGCATCGATCGCCCGCGCGGCTTGAATA
CCATCTTCAATTTGAACGGGAACTTGTTTATGTCCTTGTAACTTTAACTT
AACATCTTCGTTATTTCTCAAGTCTTTCTTATTTCCGCATAAAATAATTG
GTACTCCCGGACAGAAATGTTTAACTTCCGGAGCCCATTTTTCGACGACG
TTCATGAAACTGTCCGGACTGTCAATGCTGTAACAGATAACGATAACGTC
GGCATCTGGGTACATGAGTATACGGAGTTGGTCATATTCTTCTTGTCCCG
CAGTGTCGAATAATGCAAGTTCAACCTATAAAGATAAAGAGAATAATTGG
AATCAGATATATAGAATTTTTTTTCATACAAAAATGTATTTGGGTCTTTT
TTTTGAAATTTCTCATAATTTTAGATTGAGTAATTTTTCCAGAGATATTT
GAAATTTGTAACAAACAGATCAATTAAAATACTTCAAAACGCCACAAAAA
TAAAACCGCAAAAAAACTTACTCTTAGGTTCCAAATAAACGGGCCCCCCC
GCTTGTTAATTTTTCGAAAATTTTCCAACCCCCCCGGACCTTATTAGGAC
CCCCCCGTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041194XLOC_041194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065755-exon-scaffold_444-1575043694:30494..31245TCONS_00065755-exon-scaffold_444-1575043694:30494..31245Clytia hemisphaericaexon
TCONS_00065755-exon-scaffold_444-1575043694:28433..29393TCONS_00065755-exon-scaffold_444-1575043694:28433..29393Clytia hemisphaericaexon
TCONS_00065755-exon-scaffold_444-1510915933:30494..31245TCONS_00065755-exon-scaffold_444-1510915933:30494..31245Clytia hemisphaericaexon
TCONS_00065755-exon-scaffold_444-1510915933:28433..29393TCONS_00065755-exon-scaffold_444-1510915933:28433..29393Clytia hemisphaericaexon
TCONS_00065755-exon-scaffold_444-1491911889:30494..31245TCONS_00065755-exon-scaffold_444-1491911889:30494..31245Clytia hemisphaericaexon
TCONS_00065755-exon-scaffold_444-1491911889:28433..29393TCONS_00065755-exon-scaffold_444-1491911889:28433..29393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:28433..31245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.816211	0.337559	0.643516	0.104994	33.8448	22.2191	23.2775	22.5974	21.4844	58.0025	26.6215	36.3378	19.7669	18.415	20.9252	13.7509	12.7425	12.5827	25.729	16.6335	25.4768	28.821	13.6602	12.2132	15.2972	13.1341	28.558	24.2233	60.8214	45.9192
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00065755 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.445e-45
Identity = 76/120 (63.33%), Postives = 92/120 (76.67%), Query Frame = -1 
Query: 1066 VELALFDTAGQEEYDQLRILMYPDADVIVICYSIDSPDSFMNVVEKWAPEVKHFCPGVPIILCGNKKDLRNNEDVKLKLQGHKQVPVQIEDGIQAARAIDAVSFVECSALTKAGVMDLFE 1425
            VELAL+DTAGQE+YD+LR L YPD DVI++C+SIDSPDS  N+ EKW PEVKHFCP VPIIL GNKKDLRN+E  + +L   KQ PV+ E+G   A  I A  ++ECSA TK GV ++FE
Sbjct:   53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
The following BLAST results are available for this feature:
BLAST of TCONS_00065755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA2.445e-4563.33Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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