TCONS_00065736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065736
Unique NameTCONS_00065736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065736 ID=TCONS_00065736|Name=TCONS_00065736|organism=Clytia hemisphaerica|type=transcript|length=784bp
TTGAAtgccagtttgcagagtatggcagAAATCATCGAGATCTCGAGGGC
AGAAAGTAGTAAATTTTGGAGGGCAGGGgcagattttgctgaaatttaaa
TCCCAGGGGCAGAAAAGCTCATAACTGCCCAATTTTAGCCATATTTTCTG
GTTTATTTAGTGTATTTCAAGTAGGTTTTGTGATTTCAGGGGCAGGTTTT
CAAGTTTACATAAATTCCTTGGGCCCCCATGACATGACATGTTCTGAAAA
AAGGCTTGAATATGAAACGTTGGCAATGCAGTttaccagacggtactaat
caatAAATTCGATAATGGAACGACCACTTATCGATTACTAATCGAATTTT
GaggaccaaaatttcaaaatatttgtgaGTCTTCGATcacactttcttaa
caacccttcgaAGACTCAACCGTTCGAGTGATTCGactgttattgattac
tttgacTACTTCGATAACCAAGCATTCTGGTTTTNatttcaaaatatttg
tgaGTCTTCGATcacactttcttaacaacccttcgaAGACTCAACCGTTC
GAGTGATTCGactgttattgattactttgacTACTTCGATAACCAAGCAT
TCTGGTTTTCAAATATCCGACAGGTCTGAGTCTGTATTTAAGTGGGTCGA
AAATAAAAGTAGTTTATCCACCAACCACAGACTTACTTAACTATTCATTT
GTTTGAAAGGGTTGAACATTGGTGGATTTGAATATATagatctttctttt
tctttataaagaaCGCCAAAAAAGTGCGGATACA
Run BLAST on NCBI

transcript from alignment at scaffold_443:29010..29793

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065736 ID=TCONS_00065736|Name=TCONS_00065736|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at scaffold_443:29010..29793 (Clytia hemisphaerica)
TGTATCCGCACTTTTTTGGCGttctttataaagaaaaagaaagatctATA
TATTCAAATCCACCAATGTTCAACCCTTTCAAACAAATGAATAGTTAAGT
AAGTCTGTGGTTGGTGGATAAACTACTTTTATTTTCGACCCACTTAAATA
CAGACTCAGACCTGTCGGATATTTGAAAACCAGAATGCTTGGTTATCGAA
GTAgtcaaagtaatcaataacagtCGAATCACTCGAACGGTTGAGTCTtc
gaagggttgttaagaaagtgtgATCGAAGACtcacaaatattttgaaatN
AAAACCAGAATGCTTGGTTATCGAAGTAgtcaaagtaatcaataacagtC
GAATCACTCGAACGGTTGAGTCTtcgaagggttgttaagaaagtgtgATC
GAAGACtcacaaatattttgaaattttggtcctCAAAATTCGATTAGTAA
TCGATAAGTGGTCGTTCCATTATCGAATTTattgattagtaccgtctggt
aaACTGCATTGCCAACGTTTCATATTCAAGCCTTTTTTCAGAACATGTCA
TGTCATGGGGGCCCAAGGAATTTATGTAAACTTGAAAACCTGCCCCTGAA
ATCACAAAACCTACTTGAAATACACTAAATAAACCAGAAAATATGGCTAA
AATTGGGCAGTTATGAGCTTTTCTGCCCCTGGGAtttaaatttcagcaaa
atctgcCCCTGCCCTCCAAAATTTACTACTTTCTGCCCTCGAGATCTCGA
TGATTTctgccatactctgcaaactggcaTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041176XLOC_041176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065736-exon-scaffold_443-1491911889:29010..29793TCONS_00065736-exon-scaffold_443-1491911889:29010..29793Clytia hemisphaericaexon
TCONS_00065736-exon-scaffold_443-1510915933:29010..29793TCONS_00065736-exon-scaffold_443-1510915933:29010..29793Clytia hemisphaericaexon
TCONS_00065736-exon-scaffold_443-1575043694:29010..29793TCONS_00065736-exon-scaffold_443-1575043694:29010..29793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:29010..29793 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123401	0.300838	0.419162	0.341737	0.499239	0.131502	0.555279	0.482619	0.168947	0.128805	0.187532	0.356062	0.400013	0.511383	0	0.112795	0	0	0.0655889	0.137268	0.0596555	0	0	0.192951	0.440586	0.538346	0.0846035	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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