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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065719 ID=TCONS_00065719|Name=TCONS_00065719|organism=Clytia hemisphaerica|type=transcript|length=3563bpRun BLAST on NCBI protein sequence of TCONS_00065719-protein >TCONS_00065719-protein ID=TCONS_00065719-protein|Name=TCONS_00065719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=863bp MVVGCSDGSVYVWQMETGHLDRCVAGTVGMEILESCNGETSAPSPALREFRun BLAST on NCBI transcript from alignment at scaffold_443:182443..202905- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065719 ID=TCONS_00065719|Name=TCONS_00065719|organism=Clytia hemisphaerica|type=transcript|length=20463bp|location=Sequence derived from alignment at scaffold_443:182443..202905- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_443:182443..202905- >TCONS_00065719 ID=TCONS_00065719|Name=TCONS_00065719|organism=Clytia hemisphaerica|type=CDS|length=36288bp|location=Sequence derived from alignment at scaffold_443:182443..202905- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065719 vs. Swiss-Prot (Human)
Match: WDR7 (WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2) HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0 Identity = 428/1161 (36.86%), Postives = 622/1161 (53.57%), Query Frame = 1
Query: 22 IEVTYSLYLPSHGKVVCGRSNGXXXXXXXXXXXXNELLQSKTQ-QKEIPHHLILTGHVGSITCLLYPHDENPRYDKSYLISGGVDFTVRAWDLSSRTLLHTFNCHGGEVLRLFVTPPQCNHRFLQCICSVGQDHSVAVCGLRERKVLLLASRHTFPVETIRWRVKDDFMVVGCSDGSVYVWQMETGHLDRCVAGTVGMEILESCNGETSAPSPALREFQRKFRLNQHLTNMASNLPIDITKTPQVVKRMKSHVTAQVSAIHQHVQGALNKGXXXXXXXXXXXXXXXXXXXXXXKSYSLPPFRVCSLRTSREEPEIHVLLLDPEALIKLLLNEEA-RFIAMIDAPNNPKRQPVTSTQSGDASTNK--------------------------------------------GTSGKPTNSKIYEI----AQLLLSCLHSWGLDPNLDELCKSKLGMLKPQKTLSFGLLTRG-RLSLTFPGWRVENTPNTEEGSETAEKGQSETERIDVPQTPRXXXXXXXXXKAYFNTHWQLSSSLTTQHLISIVAVCNTLMSMNYARL---------------NKQELTQSQSLTTSARSMINSEIK---------------------------------AGWSLLATLHCCMLPDSMQGMSYRPPLLHILARRWQDRCLEIREAAQAILLGELRRIGPIGRKQLIDAWSPHLPQDMD---SADLGFEDLEQYINNEDEKTVFITAEEDRTDIAMVMMTT---------RKMVAS-DARLRHATAIIMLGVIGAEFQKEIDP---INSSKSQS--------SDCVMDVTVVRNTALALTSLLQNQRQQDASKSASPFSAIRRAAIDLMGRGFALWEPHIDVSQVLIGLFELCADIEQQIRTDRGRSISLTAAKDLLRSSKHSLSLIATARPSACITTLAKEVARHVAXXXXXXFTQPSPAAIAVYSHVRHQPSSSTEVQTTNTLHNARSEILRIMELMVDKSQHQXXXXXXXXXXXXXHMLDFKQLKDRGITEAFPSIFKFPMVSYCSTTRRLAVGSRVGHIALYELRSSRCQLIPAHENAITALAFSPEGKVLASFSAKDKKISFYQTXXXX-----XXXXXXTVRCIQSYSTLISDDPNVG-----KSVRILWTAKKHVILLLGDGSQHKY 3105
++VT S+Y+P+HG++VCGR +GSIVI+ + I +LLQ + ++ P H L GH +TCLLYPH + RYD+ YLISGGVDF+V WD+ S + H F HGGE+ +L V P C+ R CICSV DHSV + LRE+K ++LASRH FP++ I+WR DD++VVGCSDGSVYVWQM+TG LDRCV G +EIL +C+ A +L ++ A NL +T+ + +H Q A + A +KG+ YS V +++T+ +P+IHVL D EALI LL EEA R + +P N ++ +S + G T K + KP Y + A+L +SCLH+WGL+ LDE+C +LGMLKP T+SFGLL+RG +SL PG+ N P + G++E R +P + + + +S ++TTQHL+SI+++ NTLMSM A + +L++++ ++ +++ +IK GWS LA +HC MLPD + +RPPLL +LARRWQDRCLE+REAAQA+LL ELRRI GRK+ IDAW+P+LPQ +D S + E + D +E+ D+ +TT +K+ S + R + ATAI++LGVIGAEF EI+P + +S S + + ++ R+T ALT LL Q S P S IRR AIDL+GRGF +WEP++DVS VL+GL ELCAD E+Q+ + + L+ A D RS++H+LSLIATARP A ITT+AKEV RH A +++ + S + T TL A+ EILR++E++++K VVD +VEV+DII++ L+ +K +G+ E FP+I +F MVSY R+AVG+R G +ALY++R+ +CQ I H+ ITA+AF+P+G+ LA++S D ISF+Q ++SL + + +RCI++Y + G K R++WT+ ++VIL+ DG +H++
Sbjct: 407 LKVTASVYIPAHGRLVCGREDGSIVIVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSARYDQRYLISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQLLVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRHLFPIQVIKWRPSDDYLVVGCSDGSVYVWQMDTGALDRCVMGITAVEILNACDEAVPAAVDSL-------------SHPAVNLKQAMTRRSLAALKNMAHHKLQTLATNLLASEASDKGNL--------------------PKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDDEEEDEEIMRQRREESDPEYRSSKSKPLTLLEYNLTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGY---NQPACK-----LSHGKTEVGR-KLPAS-----------EGVGKGTYGVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPSTPDLSKARGSPPTSSNIVQGQIKQVAAPVVSARSDADHSGSDPPSAPALHTCFLVNEGWSQLAAMHCVMLPDLLGLDKFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKEAIDAWAPYLPQYIDHVISPGVTSEAAQTITTAPDASGPEAKVQEEEHDLVDDDITTGCLSSVPQMKKISTSYEERRKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTFLL----LQPPSPKLPPHSTIRRTAIDLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQL-ANITMGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHRHTALAAN---------------------TQSQQNMHTTTLARAKGEILRVIEILIEKMPTDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERNHRIAVGARHGSVALYDIRTGKCQTIHGHKGPITAVAFAPDGRYLATYSNTDSHISFWQMNTSLLGSIGMLNSAPQLRCIKTYQVPPVQPASPGSHNALKLARLIWTSNRNVILMAHDGKEHRF 1488 The following BLAST results are available for this feature:
BLAST of TCONS_00065719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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