TCONS_00065719-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065719-protein
Unique Name	TCONS_00065719-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	863

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065719-protein ID=TCONS_00065719-protein|Name=TCONS_00065719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=863bp
MVVGCSDGSVYVWQMETGHLDRCVAGTVGMEILESCNGETSAPSPALREF
QRKFRLNQHLTNMASNLPIDITKTPQVVKRMKSHVTAQVSAIHQHVQGAL
NKGHSSGQQNSNSSSQTQQHSGSESKSYSLPPFRVCSLRTSREEPEIHVL
LLDPEALIKLLLNEEARFIAMIDAPNNPKRQPVTSTQSGDASTNKGTSGK
PTNSKIYEIAQLLLSCLHSWGLDPNLDELCKSKLGMLKPQKTLSFGLLTR
GRLSLTFPGWRVENTPNTEEGSETAEKGQSETERIDVPQTPRTSTDDDSS
SKAYFNTHWQLSSSLTTQHLISIVAVCNTLMSMNYARLNKQELTQSQSLT
TSARSMINSEIKAGWSLLATLHCCMLPDSMQGMSYRPPLLHILARRWQDR
CLEIREAAQAILLGELRRIGPIGRKQLIDAWSPHLPQDMDSADLGFEDLE
QYINNEDEKTVFITAEEDRTDIAMVMMTTRKMVASDARLRHATAIIMLGV
IGAEFQKEIDPINSSKSQSSDCVMDVTVVRNTALALTSLLQNQRQQDASK
SASPFSAIRRAAIDLMGRGFALWEPHIDVSQVLIGLFELCADIEQQIRTD
RGRSISLTAAKDLLRSSKHSLSLIATARPSACITTLAKEVARHVASSSSM
SFTQPSPAAIAVYSHVRHQPSSSTEVQTTNTLHNARSEILRIMELMVDKS
QHQVVDFIVEVVDIIVHMLDFKQLKDRGITEAFPSIFKFPMVSYCSTTRR
LAVGSRVGHIALYELRSSRCQLIPAHENAITALAFSPEGKVLASFSAKDK
KISFYQTSSSLLGMLSSTVRCIQSYSTLISDDPNVGKSVRILWTAKKHVI
LLLGDGSQHKYQI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041171	XLOC_041171	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065719	TCONS_00065719	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR001680	WD40_repeat
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 53..857 e-value: 2.7E-13 score: 48.8
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 1..52 e-value: 0.12 score: 11.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..202
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1..23 score: 8.771
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..23 score: 8.782
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 742..809

Blast

[Close]

BLAST of TCONS_00065719-protein vs. Swiss-Prot (Human)
Match: WDR7 (WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2)

HSP 1 Score: 495.738 bits (1275), Expect = 1.627e-156
Identity = 350/995 (35.18%), Postives = 513/995 (51.56%), Query Frame = 0

Query:    1 MVVGCSDGSVYVWQMETGHLDRCVAGTVGMEILESCNGETSAPSPALREFQRKFRLNQHLTNMASNLPIDITKTPQVVKRMKSHVTAQVSAIHQHVQGALNKGHSSGQQNSNSSSQTQQHSGSESKSYSLPPFRVCSLRTSREEPEIHVLLLDPEALIKLLLNEEA-RFIAMIDAPNNPKRQPVTSTQSGDASTNK--------------------------------------------GTSGKPTNSKIYEI----AQLLLSCLHSWGLDPNLDELCKSKLGMLKPQKTLSFGLLTRG-RLSLTFPGWRVENTPNTEEGSETAEKGQSETERIDVPQTPRTSTDDDSSSKAYFNTHWQLSSSLTTQHLISIVAVCNTLMSMNYARL---------------NKQELTQSQSLTTSARSMINSEIK---------------------------------AGWSLLATLHCCMLPDSMQGMSYRPPLLHILARRWQDRCLEIREAAQAILLGELRRIGPIGRKQLIDAWSPHLPQDMD---SADLGFEDLEQYINNEDEKTVFITAEEDRTDIAMVMMTT---------RKMVAS-DARLRHATAIIMLGVIGAEFQKEIDP---INSSKSQS--------SDCVMDVTVVRNTALALTSLLQNQRQQDASKSASPFSAIRRAAIDLMGRGFALWEPHIDVSQVLIGLFELCADIEQQIRTDRGRSISLTAAKDLLRSSKHSLSLIATARPSACITTLAKEVARHVASSSSMSFTQPSPAAIAVYSHVRHQPSSSTEVQTTNTLHNARSEILRIMELMVDKSQHQVVDFIVEVVDIIVHMLDFKQLKDRGITEAFPSIFKFPMVSYCSTTRRLAVGSRVGHIALYELRSSRCQLIPAHENAITALAFSPEGKVLASFSAKDKKISFYQTSSSLL---GMLSST--VRCIQSYSTLISDDPNVG-----KSVRILWTAKKHVILLLGDGSQHKYQI 863
            +VVGCSDGSVYVWQM+TG LDRCV G   +EIL +C+    A   +L             ++ A NL   +T+      +  +H   Q  A +     A +KG+                       YS     V +++T+  +P+IHVL  D EALI  LL EEA R    + +P N ++   +S + G   T K                                             +  KP     Y +    A+L +SCLH+WGL+  LDE+C  +LGMLKP  T+SFGLL+RG  +SL  PG+   N P  +        G++E  R  +P           +S+      + +S ++TTQHL+SI+++ NTLMSM  A                 +  +L++++    ++ +++  +IK                                  GWS LA +HC MLPD +    +RPPLL +LARRWQDRCLE+REAAQA+LL ELRRI   GRK+ IDAW+P+LPQ +D   S  +  E  +      D        +E+  D+    +TT         +K+  S + R + ATAI++LGVIGAEF  EI+P   +   +S S        +    + ++ R+T  ALT LL     Q  S    P S IRR AIDL+GRGF +WEP++DVS VL+GL ELCAD E+Q+  +    + L+ A D  RS++H+LSLIATARP A ITT+AKEV RH A +++                     + S +   T TL  A+ EILR++E++++K    VVD +VEV+DII++ L+   +K +G+ E FP+I +F MVSY     R+AVG+R G +ALY++R+ +CQ I  H+  ITA+AF+P+G+ LA++S  D  ISF+Q ++SLL   GML+S   +RCI++Y        + G     K  R++WT+ ++VIL+  DG +H++ +
Sbjct:  575 LVVGCSDGSVYVWQMDTGALDRCVMGITAVEILNACDEAVPAAVDSL-------------SHPAVNLKQAMTRRSLAALKNMAHHKLQTLATNLLASEASDKGNL--------------------PKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDDEEEDEEIMRQRREESDPEYRSSKSKPLTLLEYNLTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGY---NQPACK-----LSHGKTEVGR-KLP-----------ASEGVGKGTYGVSRAVTTQHLLSIISLANTLMSMTNATFIGDHMKKGPTRPPRPSTPDLSKARGSPPTSSNIVQGQIKQVAAPVVSARSDADHSGSDPPSAPALHTCFLVNEGWSQLAAMHCVMLPDLLGLDKFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKEAIDAWAPYLPQYIDHVISPGVTSEAAQTITTAPDASGPEAKVQEEEHDLVDDDITTGCLSSVPQMKKISTSYEERRKQATAIVLLGVIGAEFGAEIEPPKLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTFLLL----QPPSPKLPPHSTIRRTAIDLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQL-ANITMGLPLSPAADSARSARHALSLIATARPPAFITTIAKEVHRHTALAAN---------------------TQSQQNMHTTTLARAKGEILRVIEILIEKMPTDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERNHRIAVGARHGSVALYDIRTGKCQTIHGHKGPITAVAFAPDGRYLATYSNTDSHISFWQMNTSLLGSIGMLNSAPQLRCIKTYQVPPVQPASPGSHNALKLARLIWTSNRNVILMAHDGKEHRFMV 1490

The following BLAST results are available for this feature:

BLAST of TCONS_00065719-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065719-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR7	1.627e-156	35.18	WD repeat-containing protein 7 OS=Homo sapiens GN=...	[more]

You are here

TCONS_00065719-protein (polypeptide) - C. hemisphaerica