TCONS_00065698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065698
Unique NameTCONS_00065698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065698 ID=TCONS_00065698|Name=TCONS_00065698|organism=Clytia hemisphaerica|type=transcript|length=474bp
CGAAAGCAAGCTGAAACGGTACCTCGTGGGAAATGTGAACGttggagtta
gatgaatttgaaaaatgctCGCAACAAAGTAACGATCTTTCCAAGATACA
AAAGgAACATCAACAAATGAAAAAGGATATCGCAGATGCTCAACGAGATA
TCCGTGATTTGAAATTCGAAAAACAGCTTTTAGCTGAGAAGGTCACATCC
CTACAACGTGAAATGCAAGAACAAAAATTGCTTCACTCGCAACTCCGTGA
TGAAGCGAGTAGCGAGTTTCGAAGTTTATACCGAAAAGCTGGCAAtcatg
aaaaggatgttgattTGTTGAAATATCAACTCAAAATGAGCACCAAAAAG
TATGCTTTGGATTTGGAGAATATGCGATGGGAGATGTCAACCAACcgaaa
atacaattcaaaatttAACGCTTCAGAGCTTGTTGACGATGACAAACAAT
AAATTTCATCTTTCATAATtaaat
Run BLAST on NCBI

protein sequence of TCONS_00065698-protein

>TCONS_00065698-protein ID=TCONS_00065698-protein|Name=TCONS_00065698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MKKDIADAQRDIRDLKFEKQLLAEKVTSLQREMQEQKLLHSQLRDEASSE
FRSLYRKAGNHEKDVDLLKYQLKMSTKKYALDLENMRWEMSTNRKYNSKF
NASELVDDDKQ
Run BLAST on NCBI

transcript from alignment at scaffold_443:274123..276841+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065698 ID=TCONS_00065698|Name=TCONS_00065698|organism=Clytia hemisphaerica|type=transcript|length=2719bp|location=Sequence derived from alignment at scaffold_443:274123..276841+ (Clytia hemisphaerica)
CGAAAGCAAGCTGAAACGGTACCTCGTGGGAAATGTGAACGttggagtta
ggtaagcgtagaaAGAAATTTTCCGGCGGCAAGGGCAGaaagcagcctct
caccaacttttgctagttctcctacgcagctcctattctagcaaacgccc
accgcctttatgttcccgccctctgacatgattaattaacagactagttt
gctagtctatttCTTTATTTGTCTGGAATTGGAAGTTGCTAAGTTTGAAG
CTGCGAATAAGCTGGAGTTGAATCGCGTAAGccataaaatatatattttt
gtacaGTAGAATTAATCCTGAACGAAATTCCAGTAGTTAGAAAGACTACA
GAAATTACACACGCTGAAAATAATGCGATGGAAACGGTTtaaggctggtc
tccactttcgctAGCCtgtaccttcccacaaaccaaatttttctttgtta
aatTGCGATAAAAAAgtggttttcgtctaacaggctacaCTTGCGCGCGA
tttgagcgaaaactttttgacgtttttctaaggtcattggtcggttgaaa
aatgaagcaattccgttggtcgaaattgacgtaacgaatgaaattttttt
gcttgcacgaaacttttttatgacgtaatcttctTTTCAGGCAATAAAGG
TGgagaaagtggagaccggcctttagttttaaattacaaaatctagggcA
ATGTAGAAGTGCTGATTTGTCCTaagtcagtcaggatctagacaaataaA
NCGAATGTAGAAGTGATGATttgtcctcagtcagtcaggatctagacaaa
taaAAAACTAACTGTTTCCGCCGCAGAAAACACAGCAACCATATTGTATT
TCTAAACCTAatgaaaagtgacgtcaaaatactgtattcaataaaaatat
atttgacgtcaaaaattgaTCGGTAACCCAGGATACTTGCATTGAAACCA
AACataaaaaacaataaacaaaatctttcataACCATCAATACACAGCTC
TCTACTTGGATCAAGCAGCAAAAGCTACACAACCTACTTTATAAATCTCT
AATTTAATCTACACGTAAACCACACTACTATATTTATAACAATGGAAGGT
TGGCTTAGAAGTGAATGCAATTGCAAATCCGCTGGCTCCGCGTCTTCTAG
CTATACATCACCATCAGGAAACAGTAAACCACAGAATCGTTATCTTTGCT
ATTTATtagatgaatttgaaaaatgctCGCAACAAAGTAACGATCTTTCC
AAGATACAAAAGGTATTTATAAAATTTGCGGCTTGAAGTAATTTCCTTTT
TGCCTTTTATTGTATTTGTCTGTAAATACACCCAATATATCTacgtaaat
ttcaaaattcattgctgtaCTCCACTAACGAGGTTTATAAAGCTTGTAAA
AATTCGAATTTGAAAGAAGGTTTCCCTGAATTAAGCAGCTCAATGATTAA
AGACTTCATTATTACTATTAGTAATCTTCTTCGTTGCAGGGACGTCGTAA
CAGGGAGGAAGAGGGGGCTTTTTTATAACCTTCAAATTGCCTAAACTGAT
CTCTTTCAGAAAGACTTCCAGCTAAAATTTGGCCAGAATATATAACCCga
cttaaaattgttttttttctaggAACATCAACAAATGAAAAAGGATATCG
CAGATGCTCAACGAGATATCCGTGATTTGAAATTCGAAAAACAGGTACGT
AAAATAGTTAGTTGGAACCGTAAAATAGCTAGTTAGCACCGTAAAATAGT
TAGTTAGCACCGCAAAATAGTTAGTTGGCACCGCAAAATAGTTAGTTAGC
ACCGTAAAATAGTTAGTTGGCAGTGACTTATACATTATCAAAGGGTATGA
AATTACTTGTGGAAAAACTACTTTGTACAAGGGgacaaataaaatttaaa
acttgTTGGGGTTTTTAAGAgcgtcaaaattttttgaagcttcagaatgt
tcttaacttttcggctTTTAAGACTGAAAAAGTTCTTAACGTGTTAATAT
TtttaatactattttttgaGTTACGTGATCTAAGTCTTGAATCGTTTTTA
GACTGTGCTAAAATTTCAGGCCTAGAAGCCTTATTTTCTTGTATAAATAA
CGTGTGTACTGATAAAATGCTATAGACTCTTCTAGACGTTTTTTCTCCGA
TTCTATACATGTAGATTTAAACTAACCAGTCATTCTTTTCTTCATAGCTT
TTAGCTGAGAAGGTCACATCCCTACAACGTGAAATGCAAGAACAAAAATT
GCTTCACTCGCAACTCCGTGATGAAGCGAGTAGCGAGTTTCGAAGTTTAT
ACCGAAAAGCTGGCAAtcatgaaaaggatgttgattTGTTGAAATATCAA
CTCAAAATGAGCACCAAAAAGGTATACCCATTGATTTGGTAGGGACTAGA
TCCGAAACTCACGGATAGGAAATGAAGTCACTATTTCCCAACCAGAACAA
GTGACCCGTgtgttttttaaacaaaacttttaaatgcGGGCAaatttaag
gcttcactttttcttgacGAAAGGTTGAGTTAAGACTTACACGTTAAGCT
TcgtaattttaatattttctacCAATTTTAATTTATTCACTTTAGTATGC
TTTGGATTTGGAGAATATGCGATGGGAGATGTCAACCAACcgaaaataca
attcaaaatttAACGCTTCAGAGCTTGTTGACGATGACAAACAATAAATT
TCATCTTTCATAATtaaat

Coding sequence (CDS) from alignment at scaffold_443:274123..276841+

>TCONS_00065698 ID=TCONS_00065698|Name=TCONS_00065698|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_443:274123..276841+ (Clytia hemisphaerica)
ATGAAAAAGGATATCGCAGATGCTCAACGAGATATCCGTGATTTGAAATT
CGAAAAACAGCTTTTAGCTGAGAAGGTCACATCCCTACAACGTGAAATGC
AAGAACAAAAATTGCTTCACTCGCAACTCCGTGATGAAGCGAGTAGCGAG
TTTCGAAGTTTATACCGAAAAGCTGGCAAtcatgaaaaggatgttgattT
GTTGAAATATCAACTCAAAATGAGCACCAAAAAGTATGCTTTGGATTTGG
AGAATATGCGATGGGAGATGTCAACCAACcgaaaatacaattcaaaattt
AACGCTTCAGAGCTTGTTGACGATGACAAACAATAAATGAAAAAGGATAT
CGCAGATGCTCAACGAGATATCCGTGATTTGAAATTCGAAAAACAGCTTT
TAGCTGAGAAGGTCACATCCCTACAACGTGAAATGCAAGAACAAAAATTG
CTTCACTCGCAACTCCGTGATGAAGCGAGTAGCGAGTTTCGAAGTTTATA
CCGAAAAGCTGGCAAtcatgaaaaggatgttgattTGTTGAAATATCAAC
TCAAAATGAGCACCAAAAAGTATGCTTTGGATTTGGAGAATATGCGATGG
GAGATGTCAACCAACcgaaaatacaattcaaaatttAACGCTTCAGAGCT
TGTTGACGATGACAAACAATAAATGAAAAAGGATATCGCAGATGCTCAAC
GAGATATCCGTGATTTGAAATTCGAAAAACAGCTTTTAGCTGAGAAGGTC
ACATCCCTACAACGTGAAATGCAAGAACAAAAATTGCTTCACTCGCAACT
CCGTGATGAAGCGAGTAGCGAGTTTCGAAGTTTATACCGAAAAGCTGGCA
AtcatgaaaaggatgttgattTGTTGAAATATCAACTCAAAATGAGCACC
AAAAAGTATGCTTTGGATTTGGAGAATATGCGATGGGAGATGTCAACCAA
CcgaaaatacaattcaaaatttAACGCTTCAGAGCTTGTTGACGATGACA
AACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041162XLOC_041162Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065698-proteinTCONS_00065698-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065698-exon-scaffold_443-1491911889:274123..274173TCONS_00065698-exon-scaffold_443-1491911889:274123..274173Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1510915933:274123..274173TCONS_00065698-exon-scaffold_443-1510915933:274123..274173Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1575043694:274123..274173TCONS_00065698-exon-scaffold_443-1575043694:274123..274173Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1491911889:275332..275384TCONS_00065698-exon-scaffold_443-1491911889:275332..275384Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1510915933:275332..275384TCONS_00065698-exon-scaffold_443-1510915933:275332..275384Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1575043694:275332..275384TCONS_00065698-exon-scaffold_443-1575043694:275332..275384Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1491911889:275745..275816TCONS_00065698-exon-scaffold_443-1491911889:275745..275816Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1510915933:275745..275816TCONS_00065698-exon-scaffold_443-1510915933:275745..275816Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1575043694:275745..275816TCONS_00065698-exon-scaffold_443-1575043694:275745..275816Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1491911889:276320..276493TCONS_00065698-exon-scaffold_443-1491911889:276320..276493Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1510915933:276320..276493TCONS_00065698-exon-scaffold_443-1510915933:276320..276493Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1575043694:276320..276493TCONS_00065698-exon-scaffold_443-1575043694:276320..276493Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1491911889:276718..276841TCONS_00065698-exon-scaffold_443-1491911889:276718..276841Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1510915933:276718..276841TCONS_00065698-exon-scaffold_443-1510915933:276718..276841Clytia hemisphaericaexon
TCONS_00065698-exon-scaffold_443-1575043694:276718..276841TCONS_00065698-exon-scaffold_443-1575043694:276718..276841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:274123..276841 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0287983	0	0	0	0.0629413	0.344243	0.644553	0.112817	0	0	0	0.357864	0.184934	0.396872	0.326327	2.85839	2.40864	0	0.214624	0.129441	0	0.153502	0.697779	9.38532	8.65903	0	0	0.0327782	0.151394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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