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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065691 ID=TCONS_00065691|Name=TCONS_00065691|organism=Clytia hemisphaerica|type=transcript|length=2362bpRun BLAST on NCBI protein sequence of TCONS_00065691-protein >TCONS_00065691-protein ID=TCONS_00065691-protein|Name=TCONS_00065691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=694bp MIFMEKRRIIMLSSSSLFLLLICWWCWEAIGSSSFYKNDEPMIFPLGSDFRun BLAST on NCBI transcript from alignment at scaffold_443:36275..46151+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065691 ID=TCONS_00065691|Name=TCONS_00065691|organism=Clytia hemisphaerica|type=transcript|length=9877bp|location=Sequence derived from alignment at scaffold_443:36275..46151+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_443:36275..46151+ >TCONS_00065691 ID=TCONS_00065691|Name=TCONS_00065691|organism=Clytia hemisphaerica|type=CDS|length=27105bp|location=Sequence derived from alignment at scaffold_443:36275..46151+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065691 vs. Swiss-Prot (Human)
Match: TXD11 (Thioredoxin domain-containing protein 11 OS=Homo sapiens GN=TXNDC11 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 5.018e-24 Identity = 67/209 (32.06%), Postives = 111/209 (53.11%), Query Frame = 1
Query: 1705 MPHGSIDGLACRTNKTLNFYILDAFRYEYLVTKVLGVEHKTN-ESSIFIVDLQSKTHHLMGREKAPSALERLILDYTNDNLNPHYPS-----IPSQQHRQPLHKEIVELSSSSFNKEVLENDQNVLVMFYANWCGVCKPANLMFLKLLHQQKDSKVKFARIDNDLHDLPWHLTASTYPSFILFPAQRKEDSIAFPTDKEMTMENFAQFL 2313
M + GL+CRTNKTLN Y+LD+ + +L + LG T + IVD++ ++H+++ ++A L +L L+ N + Y I S + P I E+++ +F + VL+ Q+VL+++YA WCG C N +F++L ARID +DLPW P+ + FP RK+ S+ +P D +T+ N +F+
Sbjct: 591 MTSTNFTGLSCRTNKTLNIYLLDSNLF-WLYAERLGAPSSTQVKEFAAIVDVKEESHYILDPKQA---LMKLTLESFIQNFSVLYSPLKRHLIGSGSAQFPSQHLITEVTTDTFWEVVLQK-QDVLLLYYAPWCGFCPSLNHIFIQLARNLPMDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLSVKYPEDVPITLPNLLRFI 794 HSP 2 Score: 104.375 bits (259), Expect = 8.630e-23 Identity = 88/315 (27.94%), Postives = 130/315 (41.27%), Query Frame = 1
Query: 373 IFPLGSDFVDFRNGSMDSLSAWLRLHPITLVVYYASWSGQCLKAVPEIIKTHNVIRNNPGLSVVGINCW--HSECQKNFNTPHFPRVFLYHTHHRPIEYFDEVLTNKMVEFLINSIRPFTHIGSANALKRFQQENDNHVLSFMSPTEIPLSRKYKVMLKVALQSLT-----------------------------YANTPKIGIITNKDIASTHGLLKHGSVSLNSRFNEKKVYPAN-FNYTSQDIINWISANSRKLVNQLTPHIYEREYYTKQLKQ-PALILTSP-TPLSNLDNGEKLAYYPMLYETATRYYNC 1215
F L S +D G +D R + L+ +YA W GQ + A EI + + + + + V INCW +C+K + +FP ++LYH PIEY + + +F+ ++P +I S + L F + VL + + P Y AL SL Y T + G+ITNK +A L+ GSV L+ FN V+P NYT+++I W N L L PH + +LK+ PAL L P PL+ E + E A Y NC
Sbjct: 100 FFSLRSPVLDLFQGQLDYAEYVRRDSEVVLLFFYAPWCGQSIAARAEIEQAASRLSDQ--VLFVAINCWWNQGKCRKQKHFFYFPVIYLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKALESTSSPRALVSFTGEWHLETKIYVLDYLGTVRFGVITNKHLAKLVSLVHSGSVYLHRHFNTSLVFPREVLNYTAENICKWALENQETLFRWLRPHGGKSLLLNNELKKGPALFLFIPFNPLA-----ESHPLIDEITEVALEYNNC 407 The following BLAST results are available for this feature:
BLAST of TCONS_00065691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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